Wall clock time and date at job start Tue Mar 31 2020 07:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47129 * 239.99917 * 2 1 3 5 5 O 1.42903 * 109.46681 * 59.99820 * 4 2 1 6 6 C 1.52995 * 109.47392 * 119.99705 * 2 1 3 7 7 H 1.08993 * 109.47461 * 305.97378 * 6 2 1 8 8 N 1.46904 * 109.46808 * 65.96889 * 6 2 1 9 9 C 1.46907 * 111.00052 * 208.87254 * 8 6 2 10 10 C 1.53001 * 109.46988 * 175.20889 * 9 8 6 11 11 H 1.08997 * 109.47009 * 59.99982 * 10 9 8 12 12 O 1.42902 * 109.46980 * 300.00145 * 10 9 8 13 13 C 1.50701 * 109.46651 * 180.02562 * 10 9 8 14 14 H 1.07997 * 120.00370 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99497 * 179.72725 * 13 10 9 16 16 N 1.31519 * 120.00268 * 0.26994 * 15 13 10 17 17 Si 1.86801 * 119.99684 * 180.27557 * 15 13 10 18 18 H 1.48492 * 109.47146 * 59.99931 * 17 15 13 19 19 H 1.48510 * 109.46817 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47236 * 299.99429 * 17 15 13 21 21 C 1.50695 * 109.47301 * 185.96810 * 6 2 1 22 22 C 1.38676 * 120.41899 * 100.00358 * 21 6 2 23 23 C 1.38630 * 118.42131 * 180.02562 * 22 21 6 24 24 C 1.38223 * 119.16319 * 359.97438 * 23 22 21 25 25 N 1.31851 * 120.76187 * 0.02562 * 24 23 22 26 26 C 1.31889 * 121.72948 * 359.70004 * 25 24 23 27 27 H 1.09001 * 109.47056 * 294.72078 * 1 2 3 28 28 H 1.08992 * 109.47504 * 54.72408 * 1 2 3 29 29 H 1.09002 * 109.47279 * 174.72461 * 1 2 3 30 30 H 1.08999 * 109.47442 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47170 * 300.00388 * 3 2 1 32 32 H 1.09000 * 109.47364 * 60.00148 * 3 2 1 33 33 H 1.09002 * 109.47070 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47224 * 299.99881 * 4 2 1 35 35 H 0.96707 * 113.99668 * 180.02562 * 5 4 2 36 36 H 1.00901 * 111.00276 * 332.83121 * 8 6 2 37 37 H 1.09000 * 109.46439 * 55.20664 * 9 8 6 38 38 H 1.08997 * 109.47185 * 295.20895 * 9 8 6 39 39 H 0.96696 * 114.00191 * 299.99824 * 12 10 9 40 40 H 0.96997 * 120.00082 * 180.02562 * 16 15 13 41 41 H 1.08000 * 120.78833 * 359.97438 * 22 21 6 42 42 H 1.08007 * 120.41669 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.62133 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.62053 * 180.30623 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5635 -0.0476 -2.4160 6 6 2.0400 -0.7211 1.2492 7 1 1.5921 -0.2728 2.1360 8 7 1.6715 -2.1415 1.1794 9 6 1.5003 -2.7077 2.5241 10 6 1.0023 -4.1500 2.4106 11 1 1.7299 -4.7430 1.8565 12 8 -0.2502 -4.1686 1.7228 13 6 0.8262 -4.7305 3.7901 14 1 1.0477 -4.1310 4.6606 15 6 0.3774 -6.0255 3.9408 16 7 0.1080 -6.7557 2.8806 17 14 0.1517 -6.7426 5.6508 18 1 -0.8387 -5.9300 6.4016 19 1 -0.3374 -8.1406 5.5407 20 1 1.4511 -6.7275 6.3694 21 6 3.5397 -0.5945 1.3253 22 6 4.1234 0.3485 2.1579 23 6 5.5068 0.4296 2.1952 24 6 6.2532 -0.4264 1.4073 25 7 5.6640 -1.3111 0.6272 26 6 4.3508 -1.4201 0.5703 27 1 -0.3633 0.4298 0.9335 28 1 -0.3634 0.5934 -0.8389 29 1 -0.3634 -1.0233 -0.0945 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 1.8486 -0.4514 -3.2472 36 1 0.8397 -2.2724 0.6233 37 1 0.7727 -2.1146 3.0781 38 1 2.4557 -2.6935 3.0486 39 1 -0.9466 -3.6599 2.1601 40 1 -0.2081 -7.6666 2.9867 41 1 3.5146 1.0047 2.7622 42 1 5.9952 1.1520 2.8325 43 1 7.3314 -0.3693 1.4303 44 1 3.9042 -2.1602 -0.0770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930578101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:49 Heat of formation + Delta-G solvation = -72.101431 kcal Electronic energy + Delta-G solvation = -24818.672719 eV Core-core repulsion = 21349.652816 eV Total energy + Delta-G solvation = -3469.019903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56163 -38.51066 -36.52411 -35.43754 -32.94144 -32.35339 -32.11966 -31.11026 -28.27868 -27.10195 -26.28904 -25.55916 -23.70059 -23.21850 -21.78335 -20.56823 -18.79983 -17.53735 -17.03367 -16.81452 -16.32779 -15.33959 -15.30357 -14.98476 -14.60654 -14.57850 -14.29857 -13.93624 -13.54680 -13.43420 -12.99582 -12.93966 -12.80373 -12.60263 -12.49053 -12.36243 -11.99450 -11.67714 -11.20281 -11.13583 -10.98323 -10.86970 -10.80463 -10.66786 -10.43492 -10.12594 -9.86869 -9.64103 -9.33790 -9.05556 -8.75871 -8.58928 -8.21397 -7.97302 -6.02450 -4.20846 1.24868 1.39139 3.27509 3.33114 3.34662 3.90970 4.19840 4.32228 4.46135 4.56070 4.78569 4.89720 4.92521 5.05839 5.09127 5.19528 5.24561 5.27263 5.47037 5.53818 5.60476 5.64422 5.74064 5.77638 5.92002 5.95515 5.97266 6.10657 6.11190 6.16502 6.23255 6.28410 6.33113 6.38584 6.42818 6.83847 6.85190 7.40939 7.64464 7.72637 7.78622 7.93255 8.13726 8.19143 8.81838 9.33255 9.55725 11.01776 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.004647 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.323466 B = 6024.368535 C = 7062.782756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.135 4.135 4 C 0.083 3.917 5 O -0.575 6.575 6 C 0.136 3.864 7 H 0.058 0.942 8 N -0.682 5.682 9 C 0.038 3.962 10 C 0.232 3.768 11 H 0.064 0.936 12 O -0.565 6.565 13 C -0.574 4.574 14 H 0.053 0.947 15 C 0.081 3.919 16 N -0.857 5.857 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.111 4.111 22 C -0.076 4.076 23 C -0.179 4.179 24 C 0.087 3.913 25 N -0.489 5.489 26 C 0.128 3.872 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.376 0.624 36 H 0.351 0.649 37 H 0.019 0.981 38 H 0.063 0.937 39 H 0.341 0.659 40 H 0.261 0.739 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 16.454 -5.754 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C -0.193 4.193 4 C 0.005 3.995 5 O -0.380 6.380 6 C 0.024 3.976 7 H 0.075 0.925 8 N -0.316 5.316 9 C -0.091 4.091 10 C 0.174 3.826 11 H 0.082 0.918 12 O -0.367 6.367 13 C -0.612 4.612 14 H 0.072 0.928 15 C -0.126 4.126 16 N -0.493 5.493 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.114 4.114 22 C -0.102 4.102 23 C -0.199 4.199 24 C -0.070 4.070 25 N -0.198 5.198 26 C -0.029 4.029 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.173 0.827 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.184 0.816 40 H 0.071 0.929 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.850 15.483 -6.374 18.090 hybrid contribution -1.369 0.462 2.067 2.522 sum 5.481 15.945 -4.307 17.402 Atomic orbital electron populations 1.21848 0.93572 1.02562 1.01872 1.20656 0.96337 0.95779 0.93113 1.21796 1.00807 0.94870 1.01795 1.22341 0.97430 0.95352 0.84362 1.86407 1.77787 1.57612 1.16159 1.20426 0.90323 0.90409 0.96413 0.92463 1.60553 1.42581 1.11831 1.16625 1.22894 0.99703 0.99197 0.87279 1.19414 0.82994 0.87765 0.92407 0.91829 1.86587 1.21929 1.75550 1.52655 1.21562 1.48317 0.98672 0.92676 0.92841 1.25016 0.94278 0.96814 0.96444 1.70064 1.42057 1.08748 1.28424 0.86738 0.78575 0.78218 0.84837 1.20221 1.21152 1.20160 1.20852 0.96948 0.96357 0.97269 1.21446 0.94876 0.97088 0.96818 1.22022 0.94585 1.01605 1.01643 1.22696 1.00255 0.91558 0.92489 1.67760 1.12330 1.19915 1.19769 1.22748 0.87987 0.96038 0.96140 0.92908 0.91547 0.92004 0.92814 0.91757 0.92994 0.93382 0.92086 0.77740 0.82718 0.96250 0.91884 0.81580 0.92910 0.85450 0.85288 0.83340 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.01 37.16 0.30 -1.40 16 2 C -0.06 -0.70 0.38 -154.51 -0.06 -0.76 16 3 C -0.13 -1.51 7.76 37.16 0.29 -1.22 16 4 C 0.08 1.00 4.90 37.16 0.18 1.18 16 5 O -0.57 -6.50 12.41 -35.23 -0.44 -6.93 16 6 C 0.14 1.84 1.63 -68.87 -0.11 1.73 16 7 H 0.06 0.80 7.55 -51.93 -0.39 0.40 16 8 N -0.68 -11.10 4.88 -107.95 -0.53 -11.63 16 9 C 0.04 0.75 5.21 -3.82 -0.02 0.73 16 10 C 0.23 5.69 3.10 -27.88 -0.09 5.60 16 11 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 12 O -0.57 -13.76 11.98 -35.23 -0.42 -14.18 16 13 C -0.57 -15.55 8.76 -34.44 -0.30 -15.85 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -25.16 12.83 55.43 0.71 -24.45 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.11 -1.53 3.61 -104.48 -0.38 -1.90 16 22 C -0.08 -0.92 8.88 -39.28 -0.35 -1.26 16 23 C -0.18 -1.99 10.11 -39.44 -0.40 -2.39 16 24 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 25 N -0.49 -7.36 10.36 -13.25 -0.14 -7.50 16 26 C 0.13 1.91 8.54 -17.55 -0.15 1.76 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 29 H 0.06 0.79 6.66 -51.93 -0.35 0.45 16 30 H 0.05 0.62 6.57 -51.93 -0.34 0.28 16 31 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.60 5.60 -51.93 -0.29 0.31 16 34 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 35 H 0.38 2.78 9.12 45.56 0.42 3.19 16 36 H 0.35 5.79 5.19 -39.29 -0.20 5.58 16 37 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.34 7.39 9.04 45.56 0.41 7.80 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.16 2.47 6.81 -52.49 -0.36 2.12 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -31.23 350.59 -7.11 -38.34 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.19 Total: 15.74 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.38 Total: -10.75 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.05 Total: -43.57 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.86 Total: -21.11 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.23 -7.11 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930578101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.758 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds