Wall clock time and date at job start Tue Mar 31 2020 07:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47129 * 239.99917 * 2 1 3 5 5 O 1.42903 * 109.46681 * 59.99820 * 4 2 1 6 6 C 1.52995 * 109.47392 * 119.99705 * 2 1 3 7 7 H 1.08993 * 109.47461 * 305.97378 * 6 2 1 8 8 N 1.46904 * 109.46808 * 65.96889 * 6 2 1 9 9 C 1.46907 * 111.00052 * 208.87254 * 8 6 2 10 10 C 1.53001 * 109.46988 * 175.20889 * 9 8 6 11 11 H 1.08997 * 109.47009 * 59.99982 * 10 9 8 12 12 O 1.42902 * 109.46980 * 300.00145 * 10 9 8 13 13 C 1.50701 * 109.46651 * 180.02562 * 10 9 8 14 14 H 1.07997 * 120.00370 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99497 * 179.72725 * 13 10 9 16 16 N 1.31519 * 120.00268 * 0.26994 * 15 13 10 17 17 Si 1.86801 * 119.99684 * 180.27557 * 15 13 10 18 18 H 1.48492 * 109.47146 * 59.99931 * 17 15 13 19 19 H 1.48510 * 109.46817 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47236 * 299.99429 * 17 15 13 21 21 C 1.50695 * 109.47301 * 185.96810 * 6 2 1 22 22 C 1.38676 * 120.41899 * 100.00358 * 21 6 2 23 23 C 1.38630 * 118.42131 * 180.02562 * 22 21 6 24 24 C 1.38223 * 119.16319 * 359.97438 * 23 22 21 25 25 N 1.31851 * 120.76187 * 0.02562 * 24 23 22 26 26 C 1.31889 * 121.72948 * 359.70004 * 25 24 23 27 27 H 1.09001 * 109.47056 * 294.72078 * 1 2 3 28 28 H 1.08992 * 109.47504 * 54.72408 * 1 2 3 29 29 H 1.09002 * 109.47279 * 174.72461 * 1 2 3 30 30 H 1.08999 * 109.47442 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47170 * 300.00388 * 3 2 1 32 32 H 1.09000 * 109.47364 * 60.00148 * 3 2 1 33 33 H 1.09002 * 109.47070 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47224 * 299.99881 * 4 2 1 35 35 H 0.96707 * 113.99668 * 180.02562 * 5 4 2 36 36 H 1.00901 * 111.00276 * 332.83121 * 8 6 2 37 37 H 1.09000 * 109.46439 * 55.20664 * 9 8 6 38 38 H 1.08997 * 109.47185 * 295.20895 * 9 8 6 39 39 H 0.96696 * 114.00191 * 299.99824 * 12 10 9 40 40 H 0.96997 * 120.00082 * 180.02562 * 16 15 13 41 41 H 1.08000 * 120.78833 * 359.97438 * 22 21 6 42 42 H 1.08007 * 120.41669 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.62133 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.62053 * 180.30623 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5635 -0.0476 -2.4160 6 6 2.0400 -0.7211 1.2492 7 1 1.5921 -0.2728 2.1360 8 7 1.6715 -2.1415 1.1794 9 6 1.5003 -2.7077 2.5241 10 6 1.0023 -4.1500 2.4106 11 1 1.7299 -4.7430 1.8565 12 8 -0.2502 -4.1686 1.7228 13 6 0.8262 -4.7305 3.7901 14 1 1.0477 -4.1310 4.6606 15 6 0.3774 -6.0255 3.9408 16 7 0.1080 -6.7557 2.8806 17 14 0.1517 -6.7426 5.6508 18 1 -0.8387 -5.9300 6.4016 19 1 -0.3374 -8.1406 5.5407 20 1 1.4511 -6.7275 6.3694 21 6 3.5397 -0.5945 1.3253 22 6 4.1234 0.3485 2.1579 23 6 5.5068 0.4296 2.1952 24 6 6.2532 -0.4264 1.4073 25 7 5.6640 -1.3111 0.6272 26 6 4.3508 -1.4201 0.5703 27 1 -0.3633 0.4298 0.9335 28 1 -0.3634 0.5934 -0.8389 29 1 -0.3634 -1.0233 -0.0945 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 1.8486 -0.4514 -3.2472 36 1 0.8397 -2.2724 0.6233 37 1 0.7727 -2.1146 3.0781 38 1 2.4557 -2.6935 3.0486 39 1 -0.9466 -3.6599 2.1601 40 1 -0.2081 -7.6666 2.9867 41 1 3.5146 1.0047 2.7622 42 1 5.9952 1.1520 2.8325 43 1 7.3314 -0.3693 1.4303 44 1 3.9042 -2.1602 -0.0770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930578101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:48 Heat of formation + Delta-G solvation = -97.093091 kcal Electronic energy + Delta-G solvation = -24819.756438 eV Core-core repulsion = 21349.652816 eV Total energy + Delta-G solvation = -3470.103622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58514 -39.55894 -38.10901 -36.70399 -34.37638 -34.11882 -33.34079 -32.16248 -29.99456 -28.07286 -27.38726 -26.94330 -25.22452 -24.23084 -22.91896 -22.29255 -19.83132 -19.03554 -18.50126 -17.81013 -17.42010 -16.71131 -16.60568 -16.44883 -16.09606 -15.90370 -15.61715 -15.39065 -14.73781 -14.58798 -14.23851 -14.19105 -14.03369 -13.87362 -13.53124 -13.39735 -13.10599 -12.94068 -12.89236 -12.83758 -12.64463 -12.51713 -12.11545 -11.95882 -11.68917 -11.41991 -11.04647 -10.82415 -10.70818 -10.61857 -10.35364 -10.16950 -9.74009 -9.32028 -8.13770 -6.39477 0.26983 0.42581 1.40082 1.41521 1.49597 2.38004 2.91025 3.11884 3.17609 3.35345 3.55693 3.80564 3.85501 4.05318 4.11723 4.15262 4.20585 4.27769 4.29408 4.44615 4.48416 4.58767 4.59967 4.66407 4.70858 4.81616 4.83474 4.95144 5.01517 5.03597 5.10985 5.16754 5.25605 5.36003 5.37769 5.41688 5.62209 5.73067 5.86818 6.02250 6.19362 6.51946 6.73968 6.90100 7.13767 7.33239 7.54647 8.90461 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.004647 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.323466 B = 6024.368535 C = 7062.782756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.127 4.127 4 C 0.089 3.911 5 O -0.581 6.581 6 C 0.142 3.858 7 H 0.063 0.937 8 N -0.683 5.683 9 C 0.062 3.938 10 C 0.235 3.765 11 H 0.020 0.980 12 O -0.575 6.575 13 C -0.588 4.588 14 H 0.057 0.943 15 C 0.028 3.972 16 N -0.898 5.898 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.121 4.121 22 C -0.079 4.079 23 C -0.168 4.168 24 C 0.076 3.924 25 N -0.519 5.519 26 C 0.108 3.892 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.393 0.607 36 H 0.349 0.651 37 H 0.029 0.971 38 H 0.052 0.948 39 H 0.354 0.646 40 H 0.261 0.739 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.176 0.824 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 18.607 -4.238 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C -0.184 4.184 4 C 0.011 3.989 5 O -0.389 6.389 6 C 0.031 3.969 7 H 0.081 0.919 8 N -0.317 5.317 9 C -0.067 4.067 10 C 0.177 3.823 11 H 0.038 0.962 12 O -0.379 6.379 13 C -0.626 4.626 14 H 0.076 0.924 15 C -0.175 4.175 16 N -0.535 5.535 17 Si 0.782 3.218 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.123 4.123 22 C -0.106 4.106 23 C -0.188 4.188 24 C -0.080 4.080 25 N -0.228 5.228 26 C -0.049 4.049 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.242 0.758 36 H 0.172 0.828 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.198 0.802 40 H 0.070 0.930 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.193 0.807 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.163 17.655 -4.870 19.665 hybrid contribution -1.403 -0.161 1.528 2.081 sum 5.759 17.493 -3.342 18.718 Atomic orbital electron populations 1.21810 0.93407 1.01834 1.02421 1.20620 0.96342 0.96326 0.92232 1.21716 1.00468 0.93856 1.02404 1.22185 0.97028 0.94634 0.85018 1.86362 1.77911 1.57809 1.16805 1.20429 0.90619 0.88473 0.97374 0.91922 1.60439 1.42495 1.14152 1.14610 1.22400 0.98874 0.96414 0.89012 1.19169 0.82395 0.90126 0.90598 0.96170 1.86523 1.22367 1.76196 1.52814 1.21982 1.47710 0.99089 0.93839 0.92434 1.25868 0.93985 0.97305 1.00339 1.70207 1.43397 1.09059 1.30798 0.85648 0.78763 0.77374 0.79990 1.19050 1.21033 1.19611 1.20839 0.96575 0.97039 0.97881 1.21782 0.95775 0.96715 0.96285 1.22405 0.94199 1.01275 1.00903 1.23239 1.01747 0.91061 0.91991 1.67708 1.12438 1.21435 1.21231 1.22568 0.88482 0.96721 0.97089 0.92014 0.91341 0.93294 0.93205 0.91934 0.91556 0.93870 0.93646 0.75847 0.82849 0.95334 0.92945 0.80159 0.93010 0.83109 0.81698 0.80744 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.01 71.98 0.58 -2.57 16 2 C -0.05 -1.27 0.38 -52.19 -0.02 -1.29 16 3 C -0.13 -2.58 7.76 71.98 0.56 -2.02 16 4 C 0.09 2.17 4.90 71.98 0.35 2.53 16 5 O -0.58 -12.78 12.41 -148.98 -1.85 -14.63 16 6 C 0.14 3.73 1.63 44.16 0.07 3.80 16 7 H 0.06 1.61 7.55 -2.39 -0.02 1.59 16 8 N -0.68 -22.53 4.88 -495.45 -2.42 -24.95 16 9 C 0.06 2.46 5.21 86.30 0.45 2.91 16 10 C 0.23 11.82 3.10 29.85 0.09 11.91 16 11 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 12 O -0.58 -28.58 11.98 -148.98 -1.78 -30.37 16 13 C -0.59 -32.06 8.76 25.60 0.22 -31.83 16 14 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.03 1.55 5.40 84.65 0.46 2.00 16 16 N -0.90 -53.69 12.83 21.45 0.28 -53.42 16 17 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.12 -3.19 3.61 -19.77 -0.07 -3.26 16 22 C -0.08 -1.71 8.88 22.47 0.20 -1.51 16 23 C -0.17 -3.22 10.11 22.36 0.23 -3.00 16 24 C 0.08 1.75 11.18 84.69 0.95 2.70 16 25 N -0.52 -15.54 10.36 -195.85 -2.03 -17.57 16 26 C 0.11 3.27 8.54 84.67 0.72 3.99 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 29 H 0.05 1.24 6.66 -2.39 -0.02 1.22 16 30 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 31 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.10 5.60 -2.39 -0.01 1.09 16 34 H 0.05 1.23 7.01 -2.39 -0.02 1.22 16 35 H 0.39 5.59 9.12 -74.05 -0.68 4.92 16 36 H 0.35 11.77 5.19 -89.69 -0.47 11.30 16 37 H 0.03 1.07 7.93 -2.39 -0.02 1.05 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.35 15.39 9.04 -74.06 -0.67 14.72 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.14 4.70 6.81 -2.91 -0.02 4.68 16 Total: -1.00 -67.81 350.59 -1.78 -69.59 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.79 Total: 41.73 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.79 Total: -15.64 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.17 Total: -95.94 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -3.63 Total: -45.00 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.81 -1.78 -69.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930578101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.500 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds