Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35742 * 117.00103 * 2 1 4 4 C 1.39285 * 120.84722 * 90.00277 * 3 2 1 5 5 C 1.50697 * 120.45165 * 359.97438 * 4 3 2 6 6 C 1.37953 * 119.09190 * 180.02562 * 4 3 2 7 7 N 1.31976 * 120.82375 * 359.97438 * 6 4 3 8 8 C 1.31951 * 121.86487 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.58861 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47212 * 90.00061 * 9 8 7 11 11 C 1.46900 * 110.99829 * 66.04128 * 10 9 8 12 12 C 1.46891 * 111.00120 * 189.99937 * 10 9 8 13 13 C 1.53007 * 109.47311 * 170.00099 * 12 10 9 14 14 H 1.08995 * 109.46729 * 60.00100 * 13 12 10 15 15 O 1.42901 * 109.46576 * 299.99933 * 13 12 10 16 16 C 1.50697 * 109.46894 * 180.02562 * 13 12 10 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 13 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 13 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.37991 * 120.81919 * 0.27464 * 8 7 6 25 25 C 1.50705 * 120.45121 * 179.70767 * 24 8 7 26 26 H 1.08992 * 109.47348 * 59.99945 * 1 2 3 27 27 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46213 * 299.99779 * 1 2 3 29 29 H 1.09000 * 109.47525 * 270.02119 * 5 4 3 30 30 H 1.08996 * 109.47301 * 30.02967 * 5 4 3 31 31 H 1.09003 * 109.46628 * 150.02285 * 5 4 3 32 32 H 1.07994 * 119.58730 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47269 * 330.00047 * 9 8 7 34 34 H 1.09000 * 109.46780 * 209.99999 * 9 8 7 35 35 H 1.08998 * 109.46796 * 183.95056 * 11 10 9 36 36 H 1.08997 * 109.47613 * 303.96180 * 11 10 9 37 37 H 1.09007 * 109.46887 * 63.95835 * 11 10 9 38 38 H 1.09000 * 109.47319 * 50.00031 * 12 10 9 39 39 H 1.08999 * 109.47480 * 289.99808 * 12 10 9 40 40 H 0.96703 * 114.00389 * 299.99541 * 15 13 12 41 41 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46937 * 89.99812 * 25 24 8 43 43 H 1.09005 * 109.46810 * 210.00210 * 25 24 8 44 44 H 1.08999 * 109.47006 * 329.99963 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3696 1.8458 1.1958 5 6 2.0406 1.2012 2.5176 6 6 2.9951 3.0746 1.1536 7 7 3.2862 3.6459 0.0000 8 6 2.9951 3.0748 -1.1533 9 6 3.3504 3.7735 -2.4403 10 7 4.7001 3.3723 -2.8589 11 6 4.7397 1.9470 -3.2125 12 6 5.1751 4.2043 -3.9724 13 6 6.6607 3.9308 -4.2159 14 1 6.8006 2.8786 -4.4633 15 8 7.4026 4.2456 -3.0358 16 6 7.1481 4.7849 -5.3578 17 1 6.4666 5.4561 -5.8595 18 6 8.4643 4.7104 -5.7616 19 7 8.8897 5.4553 -6.7584 20 14 9.6432 3.5501 -4.8935 21 1 10.2903 4.2587 -3.7601 22 1 8.8936 2.3757 -4.3798 23 1 10.6831 3.0938 -5.8504 24 6 2.3639 1.8484 -1.1955 25 6 2.0294 1.2067 -2.5174 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.0456 1.5123 2.8360 30 1 2.0649 0.1169 2.4092 31 1 2.7734 1.5081 3.2639 32 1 3.2498 3.5753 2.0759 33 1 3.3231 4.8525 -2.2876 34 1 2.6332 3.4978 -3.2134 35 1 5.7638 1.6602 -3.4511 36 1 4.3828 1.3537 -2.3707 37 1 4.1017 1.7696 -4.0783 38 1 5.0352 5.2566 -3.7251 39 1 4.6093 3.9643 -4.8725 40 1 7.3244 5.1680 -2.7563 41 1 9.8156 5.4025 -7.0426 42 1 2.8625 0.5818 -2.8390 43 1 1.1357 0.5924 -2.4072 44 1 1.8480 1.9818 -3.2620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -41.612185 kcal Electronic energy + Delta-G solvation = -24329.306446 eV Core-core repulsion = 20861.608656 eV Total energy + Delta-G solvation = -3467.697790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04291 -38.50230 -37.48335 -35.46905 -33.54617 -32.77606 -32.20697 -29.48800 -28.49227 -28.23665 -26.65042 -26.21978 -25.19441 -22.86843 -22.10543 -20.69505 -20.00592 -17.79968 -17.58646 -17.31054 -16.17994 -15.49877 -15.16113 -14.96784 -14.69334 -14.62123 -14.39447 -14.09407 -13.94221 -13.66207 -13.46358 -13.08016 -12.77890 -12.68435 -12.61323 -12.55256 -12.41644 -12.13114 -11.86580 -11.51842 -11.42821 -10.99915 -10.86664 -10.78478 -10.54775 -10.28021 -9.73714 -9.50500 -9.30662 -9.10907 -8.81758 -8.62410 -8.36675 -7.75974 -6.10860 -4.22483 0.93248 0.97980 3.22141 3.48572 3.52574 3.62911 3.66420 4.22783 4.46684 4.52344 4.53923 4.60687 4.79994 4.87889 4.90746 5.00692 5.11159 5.18515 5.21776 5.26141 5.30299 5.41677 5.43402 5.55633 5.66219 5.71331 5.76688 5.80960 5.93075 5.94590 6.00613 6.06718 6.13494 6.29619 6.37298 6.44249 6.63145 7.11862 7.28595 7.38503 7.56336 7.71116 8.01032 8.31558 8.85538 9.15193 9.53518 10.99538 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027884 B = 0.003509 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.923806 B = 7976.487027 C = 8198.841793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.132 3.868 4 C -0.162 4.162 5 C -0.105 4.105 6 C 0.108 3.892 7 N -0.461 5.461 8 C 0.156 3.844 9 C 0.098 3.902 10 N -0.522 5.522 11 C 0.016 3.984 12 C 0.041 3.959 13 C 0.199 3.801 14 H 0.058 0.942 15 O -0.575 6.575 16 C -0.563 4.563 17 H 0.073 0.927 18 C 0.082 3.918 19 N -0.894 5.894 20 Si 0.916 3.084 21 H -0.278 1.278 22 H -0.269 1.269 23 H -0.307 1.307 24 C -0.146 4.146 25 C -0.116 4.116 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.360 0.640 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -9.740 15.222 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.080 3.920 4 C -0.165 4.165 5 C -0.162 4.162 6 C -0.050 4.050 7 N -0.169 5.169 8 C 0.018 3.982 9 C -0.030 4.030 10 N -0.246 5.246 11 C -0.132 4.132 12 C -0.086 4.086 13 C 0.142 3.858 14 H 0.075 0.925 15 O -0.380 6.380 16 C -0.601 4.601 17 H 0.091 0.909 18 C -0.122 4.122 19 N -0.532 5.532 20 Si 0.746 3.254 21 H -0.204 1.204 22 H -0.194 1.194 23 H -0.235 1.235 24 C -0.149 4.149 25 C -0.173 4.173 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.206 0.794 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.070 -9.601 15.447 25.638 hybrid contribution -0.612 -0.727 -0.308 0.999 sum -18.682 -10.328 15.139 26.170 Atomic orbital electron populations 1.22999 0.78570 1.03410 1.00857 1.85954 1.19962 1.24423 1.94229 1.18617 0.96233 0.85729 0.91393 1.21218 1.02867 0.96492 0.95903 1.20598 1.01674 1.01112 0.92808 1.22586 0.94551 0.91466 0.96376 1.67536 1.15969 1.35687 0.97706 1.20939 0.92504 0.90746 0.94042 1.21012 0.91062 1.00203 0.90720 1.61967 1.20266 1.03482 1.38846 1.22730 1.02387 0.89402 0.98666 1.22883 0.99264 0.96666 0.89770 1.19865 0.85303 0.96889 0.83781 0.92461 1.86362 1.72880 1.31944 1.46843 1.21547 0.96675 1.25359 1.16480 0.90921 1.25007 0.98472 0.94970 0.93800 1.69962 1.16760 1.39561 1.26887 0.86207 0.79420 0.81678 0.78099 1.20361 1.19363 1.23536 1.21048 1.02086 0.95681 0.96070 1.21022 1.02406 1.00760 0.93069 0.93330 0.88530 0.93428 0.91411 0.90930 0.91011 0.82515 0.89074 0.93297 0.90816 0.91834 0.95823 0.91014 0.94782 0.79376 0.92552 0.89691 0.91749 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.81 101.05 1.09 1.35 16 2 O -0.33 -3.55 8.90 -18.93 -0.17 -3.72 16 3 C 0.13 1.60 5.73 -38.82 -0.22 1.38 16 4 C -0.16 -1.83 5.91 -104.34 -0.62 -2.45 16 5 C -0.10 -0.84 9.84 36.00 0.35 -0.48 16 6 C 0.11 1.33 10.85 -17.59 -0.19 1.14 16 7 N -0.46 -7.02 10.27 -9.55 -0.10 -7.12 16 8 C 0.16 2.30 5.79 -82.63 -0.48 1.82 16 9 C 0.10 1.48 5.07 -4.98 -0.03 1.45 16 10 N -0.52 -9.29 4.62 -244.37 -1.13 -10.42 16 11 C 0.02 0.27 7.52 60.06 0.45 0.72 16 12 C 0.04 0.82 4.56 -3.83 -0.02 0.80 16 13 C 0.20 4.76 2.17 -27.88 -0.06 4.70 16 14 H 0.06 1.43 5.61 -51.93 -0.29 1.14 16 15 O -0.57 -13.80 10.90 -35.23 -0.38 -14.18 16 16 C -0.56 -15.72 9.34 -34.44 -0.32 -16.04 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 19 N -0.89 -27.44 13.96 55.43 0.77 -26.66 16 20 Si 0.92 23.80 26.18 -169.99 -4.45 19.35 16 21 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.27 -6.95 6.54 56.52 0.37 -6.58 16 23 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 24 C -0.15 -1.89 4.89 -104.33 -0.51 -2.40 16 25 C -0.12 -1.27 7.96 36.01 0.29 -0.98 16 26 H 0.05 0.32 7.30 -51.93 -0.38 -0.05 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 34 H 0.05 0.65 5.90 -51.93 -0.31 0.34 16 35 H 0.07 1.36 6.47 -51.93 -0.34 1.03 16 36 H 0.06 0.99 4.78 -51.93 -0.25 0.74 16 37 H 0.02 0.35 7.54 -51.93 -0.39 -0.04 16 38 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 39 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.36 7.79 9.04 45.56 0.41 8.20 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.08 0.96 5.79 -51.93 -0.30 0.66 16 43 H 0.06 0.60 6.50 -51.93 -0.34 0.27 16 44 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -33.44 344.87 -6.44 -39.89 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.83 Total: 4.37 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.36 Total: -6.70 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.45 Total: -44.20 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.55 Total: -17.90 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.45 Total: 19.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.44 -6.44 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.727 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds