Wall clock time and date at job start Tue Mar 31 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35742 * 117.00103 * 2 1 4 4 C 1.39285 * 120.84722 * 90.00277 * 3 2 1 5 5 C 1.50697 * 120.45165 * 359.97438 * 4 3 2 6 6 C 1.37953 * 119.09190 * 180.02562 * 4 3 2 7 7 N 1.31976 * 120.82375 * 359.97438 * 6 4 3 8 8 C 1.31951 * 121.86487 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.58861 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47212 * 90.00061 * 9 8 7 11 11 C 1.46900 * 110.99829 * 66.04128 * 10 9 8 12 12 C 1.46891 * 111.00120 * 189.99937 * 10 9 8 13 13 C 1.53007 * 109.47311 * 170.00099 * 12 10 9 14 14 H 1.08995 * 109.46729 * 60.00100 * 13 12 10 15 15 O 1.42901 * 109.46576 * 299.99933 * 13 12 10 16 16 C 1.50697 * 109.46894 * 180.02562 * 13 12 10 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 13 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 13 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.37991 * 120.81919 * 0.27464 * 8 7 6 25 25 C 1.50705 * 120.45121 * 179.70767 * 24 8 7 26 26 H 1.08992 * 109.47348 * 59.99945 * 1 2 3 27 27 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46213 * 299.99779 * 1 2 3 29 29 H 1.09000 * 109.47525 * 270.02119 * 5 4 3 30 30 H 1.08996 * 109.47301 * 30.02967 * 5 4 3 31 31 H 1.09003 * 109.46628 * 150.02285 * 5 4 3 32 32 H 1.07994 * 119.58730 * 179.97438 * 6 4 3 33 33 H 1.09003 * 109.47269 * 330.00047 * 9 8 7 34 34 H 1.09000 * 109.46780 * 209.99999 * 9 8 7 35 35 H 1.08998 * 109.46796 * 183.95056 * 11 10 9 36 36 H 1.08997 * 109.47613 * 303.96180 * 11 10 9 37 37 H 1.09007 * 109.46887 * 63.95835 * 11 10 9 38 38 H 1.09000 * 109.47319 * 50.00031 * 12 10 9 39 39 H 1.08999 * 109.47480 * 289.99808 * 12 10 9 40 40 H 0.96703 * 114.00389 * 299.99541 * 15 13 12 41 41 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46937 * 89.99812 * 25 24 8 43 43 H 1.09005 * 109.46810 * 210.00210 * 25 24 8 44 44 H 1.08999 * 109.47006 * 329.99963 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3696 1.8458 1.1958 5 6 2.0406 1.2012 2.5176 6 6 2.9951 3.0746 1.1536 7 7 3.2862 3.6459 0.0000 8 6 2.9951 3.0748 -1.1533 9 6 3.3504 3.7735 -2.4403 10 7 4.7001 3.3723 -2.8589 11 6 4.7397 1.9470 -3.2125 12 6 5.1751 4.2043 -3.9724 13 6 6.6607 3.9308 -4.2159 14 1 6.8006 2.8786 -4.4633 15 8 7.4026 4.2456 -3.0358 16 6 7.1481 4.7849 -5.3578 17 1 6.4666 5.4561 -5.8595 18 6 8.4643 4.7104 -5.7616 19 7 8.8897 5.4553 -6.7584 20 14 9.6432 3.5501 -4.8935 21 1 10.2903 4.2587 -3.7601 22 1 8.8936 2.3757 -4.3798 23 1 10.6831 3.0938 -5.8504 24 6 2.3639 1.8484 -1.1955 25 6 2.0294 1.2067 -2.5174 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.0456 1.5123 2.8360 30 1 2.0649 0.1169 2.4092 31 1 2.7734 1.5081 3.2639 32 1 3.2498 3.5753 2.0759 33 1 3.3231 4.8525 -2.2876 34 1 2.6332 3.4978 -3.2134 35 1 5.7638 1.6602 -3.4511 36 1 4.3828 1.3537 -2.3707 37 1 4.1017 1.7696 -4.0783 38 1 5.0352 5.2566 -3.7251 39 1 4.6093 3.9643 -4.8725 40 1 7.3244 5.1680 -2.7563 41 1 9.8156 5.4025 -7.0426 42 1 2.8625 0.5818 -2.8390 43 1 1.1357 0.5924 -2.4072 44 1 1.8480 1.9818 -3.2620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:34 Heat of formation + Delta-G solvation = -67.584730 kcal Electronic energy + Delta-G solvation = -24330.432700 eV Core-core repulsion = 20861.608656 eV Total energy + Delta-G solvation = -3468.824044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95442 -39.53768 -38.79015 -37.07607 -34.61975 -34.41681 -33.64733 -30.96061 -29.72053 -29.14954 -27.74094 -27.26242 -26.55282 -24.23251 -23.13172 -21.98497 -21.45386 -19.40002 -18.68481 -18.47083 -17.17525 -16.91775 -16.66378 -16.45547 -16.02469 -15.80862 -15.45349 -15.25793 -15.15486 -14.91900 -14.67813 -14.51051 -14.14701 -13.74702 -13.58444 -13.47989 -13.41105 -13.17873 -12.98454 -12.80051 -12.73901 -12.62635 -12.51564 -12.42293 -12.17158 -11.74753 -11.13130 -11.01584 -10.87532 -10.49507 -10.33010 -10.18319 -9.73414 -9.12479 -8.37003 -6.50931 0.00858 0.07783 1.39544 1.43340 1.58336 2.37862 2.38976 2.68035 2.98403 3.17772 3.32568 3.66855 3.72283 3.91814 4.06996 4.17165 4.18253 4.25809 4.33514 4.35395 4.40901 4.46958 4.47659 4.53976 4.60457 4.65424 4.71023 4.74547 4.77630 4.80074 4.94749 4.98480 5.05805 5.13311 5.21153 5.22688 5.43884 5.47122 5.55906 6.06815 6.10195 6.16393 6.34993 6.61944 7.05063 7.20556 7.35129 8.77124 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027884 B = 0.003509 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.923806 B = 7976.487027 C = 8198.841793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.340 6.340 3 C 0.125 3.875 4 C -0.159 4.159 5 C -0.101 4.101 6 C 0.097 3.903 7 N -0.494 5.494 8 C 0.134 3.866 9 C 0.103 3.897 10 N -0.535 5.535 11 C 0.021 3.979 12 C 0.056 3.944 13 C 0.206 3.794 14 H 0.050 0.950 15 O -0.581 6.581 16 C -0.562 4.562 17 H 0.044 0.956 18 C 0.033 3.967 19 N -0.936 5.936 20 Si 0.974 3.026 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.301 1.301 24 C -0.152 4.152 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.370 0.630 41 H 0.268 0.732 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.599 -11.394 17.122 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.257 6.257 3 C 0.074 3.926 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.061 4.061 7 N -0.203 5.203 8 C -0.004 4.004 9 C -0.025 4.025 10 N -0.259 5.259 11 C -0.126 4.126 12 C -0.072 4.072 13 C 0.148 3.852 14 H 0.068 0.932 15 O -0.387 6.387 16 C -0.600 4.600 17 H 0.063 0.937 18 C -0.168 4.168 19 N -0.576 5.576 20 Si 0.802 3.198 21 H -0.203 1.203 22 H -0.191 1.191 23 H -0.229 1.229 24 C -0.155 4.155 25 C -0.170 4.170 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.197 0.803 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.218 0.782 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.518 -11.260 17.355 28.442 hybrid contribution -0.293 -0.225 -0.826 0.904 sum -19.810 -11.485 16.530 28.242 Atomic orbital electron populations 1.23259 0.76550 1.05140 1.01500 1.85935 1.21862 1.23607 1.94275 1.18787 0.96257 0.86098 0.91481 1.21557 1.01423 0.95980 0.97162 1.20663 1.03118 1.00718 0.91331 1.23003 0.94542 0.92150 0.96358 1.67467 1.17201 1.36947 0.98670 1.20842 0.94176 0.91721 0.93641 1.20972 0.89797 0.99959 0.91767 1.61840 1.22566 1.03778 1.37707 1.22687 1.01354 0.88791 0.99811 1.22528 0.96640 0.97162 0.90866 1.19679 0.87763 0.95425 0.82375 0.93233 1.86304 1.73151 1.32887 1.46381 1.21860 0.96139 1.24829 1.17174 0.93748 1.25748 1.00209 0.96367 0.94427 1.70061 1.17414 1.41462 1.28623 0.85295 0.77613 0.79878 0.77020 1.20295 1.19115 1.22933 1.21189 1.01771 0.95242 0.97271 1.21019 1.02876 1.00848 0.92255 0.93046 0.86309 0.92459 0.89526 0.91032 0.89651 0.80291 0.89761 0.91494 0.93071 0.90841 0.94065 0.91033 0.94568 0.78219 0.92267 0.90124 0.90192 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.81 113.37 1.23 1.55 16 2 O -0.34 -6.50 8.90 -90.66 -0.81 -7.31 16 3 C 0.13 2.81 5.73 22.76 0.13 2.94 16 4 C -0.16 -3.24 5.91 -19.68 -0.12 -3.36 16 5 C -0.10 -1.32 9.84 71.23 0.70 -0.62 16 6 C 0.10 2.24 10.85 84.60 0.92 3.16 16 7 N -0.49 -14.66 10.27 -184.13 -1.89 -16.55 16 8 C 0.13 3.81 5.79 42.48 0.25 4.06 16 9 C 0.10 3.00 5.07 85.56 0.43 3.43 16 10 N -0.53 -18.61 4.62 -927.05 -4.28 -22.90 16 11 C 0.02 0.68 7.52 127.69 0.96 1.64 16 12 C 0.06 2.19 4.56 86.31 0.39 2.58 16 13 C 0.21 9.77 2.17 29.85 0.06 9.83 16 14 H 0.05 2.46 5.61 -2.39 -0.01 2.45 16 15 O -0.58 -27.40 10.90 -148.98 -1.62 -29.03 16 16 C -0.56 -31.76 9.34 25.60 0.24 -31.53 16 17 H 0.04 2.71 7.99 -2.91 -0.02 2.69 16 18 C 0.03 1.92 5.47 84.65 0.46 2.38 16 19 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 20 Si 0.97 49.12 26.18 68.60 1.80 50.91 16 21 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -13.24 6.54 99.48 0.65 -12.59 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 24 C -0.15 -3.70 4.89 -19.68 -0.10 -3.79 16 25 C -0.11 -2.26 7.96 71.24 0.57 -1.70 16 26 H 0.05 0.55 7.30 -2.39 -0.02 0.54 16 27 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.98 7.62 -2.39 -0.02 0.96 16 31 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.08 2.53 7.93 -2.39 -0.02 2.51 16 34 H 0.07 1.68 5.90 -2.39 -0.01 1.67 16 35 H 0.05 1.85 6.47 -2.39 -0.02 1.84 16 36 H 0.07 2.20 4.78 -2.39 -0.01 2.18 16 37 H 0.04 1.15 7.54 -2.38 -0.02 1.14 16 38 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 39 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 40 H 0.37 15.79 9.04 -74.06 -0.67 15.12 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.08 1.68 5.79 -2.39 -0.01 1.67 16 43 H 0.08 1.31 6.50 -2.38 -0.02 1.30 16 44 H 0.08 1.46 5.95 -2.39 -0.01 1.44 16 Total: -1.00 -71.45 344.87 -0.09 -71.54 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.29 Total: 20.72 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 6.13 Total: -9.41 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -5.87 Total: -97.42 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -2.43 Total: -36.34 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.80 Total: 50.91 kcal Total: -71.45 -0.09 -71.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.953 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds