Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46961 * 2 1 4 4 C 1.52994 * 109.47687 * 239.99822 * 2 1 3 5 5 C 1.50703 * 109.47099 * 119.99307 * 2 1 3 6 6 N 1.30258 * 125.61546 * 60.00234 * 5 2 1 7 7 C 1.34474 * 108.70083 * 179.97438 * 6 5 2 8 8 C 1.50699 * 126.16481 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47247 * 275.00057 * 8 7 6 10 10 C 1.47443 * 111.00227 * 290.12346 * 9 8 7 11 11 C 1.54312 * 107.23612 * 236.74273 * 10 9 8 12 12 C 1.55142 * 103.17714 * 337.62814 * 11 10 9 13 13 O 1.42900 * 110.99267 * 277.64922 * 12 11 10 14 14 C 1.50700 * 110.99048 * 153.83199 * 12 11 10 15 15 H 1.08004 * 119.99851 * 241.45911 * 14 12 11 16 16 C 1.37875 * 120.00057 * 61.45406 * 14 12 11 17 17 N 1.31517 * 120.00100 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00140 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46947 * 60.00160 * 18 16 14 20 20 H 1.48494 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47157 * 300.00184 * 18 16 14 22 22 C 1.47844 * 110.99982 * 169.28191 * 9 8 7 23 23 C 1.34334 * 107.67116 * 0.26478 * 7 6 5 24 24 O 1.33960 * 125.62476 * 239.96082 * 5 2 1 25 25 H 1.08993 * 109.47145 * 300.00705 * 1 2 3 26 26 H 1.09001 * 109.46839 * 60.00536 * 1 2 3 27 27 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46828 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46907 * 299.99422 * 3 2 1 30 30 H 1.09003 * 109.47237 * 59.99794 * 3 2 1 31 31 H 1.09005 * 109.46780 * 300.00045 * 4 2 1 32 32 H 1.09001 * 109.47274 * 59.99908 * 4 2 1 33 33 H 1.08996 * 109.47453 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47366 * 155.00387 * 8 7 6 35 35 H 1.08999 * 109.47489 * 35.00248 * 8 7 6 36 36 H 1.08997 * 109.88254 * 117.33308 * 10 9 8 37 37 H 1.09003 * 109.88840 * 356.15438 * 10 9 8 38 38 H 1.09002 * 110.70596 * 96.10119 * 11 10 9 39 39 H 1.09005 * 110.70742 * 219.16269 * 11 10 9 40 40 H 0.96696 * 113.99925 * 298.54409 * 13 12 11 41 41 H 0.96993 * 120.00152 * 179.97438 * 17 16 14 42 42 H 1.08999 * 110.37744 * 265.19940 * 22 9 8 43 43 H 1.09008 * 110.37208 * 27.53592 * 22 9 8 44 44 H 1.07995 * 126.44452 * 179.73664 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 1.7860 -1.9503 1.5444 7 6 2.3998 -2.2307 2.7075 8 6 2.3744 -3.5529 3.4302 9 7 1.1704 -3.6298 4.2684 10 6 1.2603 -2.6999 5.4091 11 6 1.0882 -3.5355 6.6949 12 6 0.3427 -4.8016 6.1967 13 8 -1.0626 -4.5621 6.0968 14 6 0.6248 -5.9812 7.0911 15 1 1.1113 -6.8584 6.6907 16 6 0.2621 -5.9406 8.4207 17 7 -0.3307 -4.8726 8.9082 18 14 0.6111 -7.4030 9.5292 19 1 2.0734 -7.6598 9.5640 20 1 0.1267 -7.1102 10.9021 21 1 -0.0896 -8.6017 9.0027 22 6 0.9755 -4.9988 4.7914 23 6 3.0343 -1.1181 3.1125 24 8 2.8063 -0.1708 2.1816 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7216 -1.2489 34 1 3.2606 -3.6406 4.0587 35 1 2.3631 -4.3645 2.7028 36 1 0.4682 -1.9541 5.3426 37 1 2.2342 -2.2103 5.4125 38 1 2.0584 -3.8000 7.1154 39 1 0.4863 -2.9970 7.4269 40 1 -1.4835 -4.3347 6.9371 41 1 -0.5862 -4.8441 9.8435 42 1 0.2987 -5.5588 4.1461 43 1 1.9330 -5.5129 4.8754 44 1 3.6195 -1.0050 4.0131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930818303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = -55.652116 kcal Electronic energy + Delta-G solvation = -24257.590002 eV Core-core repulsion = 20789.283395 eV Total energy + Delta-G solvation = -3468.306607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.32825 -40.12128 -37.89885 -36.94450 -35.52166 -34.18877 -32.28838 -30.40315 -29.77190 -28.26083 -28.21861 -27.28706 -25.76491 -24.21074 -22.57716 -21.44618 -21.44052 -20.36557 -19.01475 -17.93293 -17.66228 -17.01077 -16.86948 -16.41016 -16.09195 -15.81314 -15.72958 -14.94497 -14.91345 -14.68988 -14.36454 -13.86324 -13.78990 -13.32859 -13.22877 -13.14077 -13.08173 -12.94992 -12.73149 -12.62467 -12.51413 -12.45587 -12.32515 -12.26151 -12.12087 -11.95077 -11.84798 -11.67716 -11.39397 -11.10016 -10.60665 -10.10912 -9.73989 -9.18045 -8.21537 -6.37780 0.50865 1.41373 1.43200 1.50452 1.65115 1.79393 2.38182 2.92688 3.02560 3.23798 3.73050 3.78802 3.91274 3.93937 4.00425 4.05445 4.14555 4.27599 4.39107 4.45194 4.56730 4.68942 4.71201 4.74156 4.82113 4.83350 4.87254 4.90613 4.94923 4.98198 5.04417 5.06176 5.16422 5.24736 5.34188 5.35681 5.42059 5.46388 5.53960 5.78884 5.93943 6.19248 6.24373 6.67824 6.83479 7.33695 7.44657 8.83619 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.003148 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.657939 B = 8891.149162 C = 8940.253654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 C -0.140 4.140 4 C -0.133 4.133 5 C 0.191 3.809 6 N -0.495 5.495 7 C -0.016 4.016 8 C 0.131 3.869 9 N -0.532 5.532 10 C 0.058 3.942 11 C -0.133 4.133 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.562 4.562 15 H 0.056 0.944 16 C 0.031 3.969 17 N -0.911 5.911 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.276 1.276 22 C 0.069 3.931 23 C -0.072 4.072 24 O -0.204 6.204 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.371 0.629 41 H 0.269 0.731 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 12.338 -15.481 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.029 3.971 3 C -0.198 4.198 4 C -0.191 4.191 5 C -0.017 4.017 6 N -0.224 5.224 7 C -0.135 4.135 8 C 0.003 3.997 9 N -0.256 5.256 10 C -0.069 4.069 11 C -0.173 4.173 12 C 0.194 3.806 13 O -0.397 6.397 14 C -0.600 4.600 15 H 0.074 0.926 16 C -0.170 4.170 17 N -0.550 5.550 18 Si 0.786 3.214 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.058 4.058 23 C -0.143 4.143 24 O -0.091 6.091 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.219 0.781 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.012 12.043 -16.641 21.706 hybrid contribution 0.898 -0.709 2.710 2.941 sum 7.910 11.335 -13.931 19.625 Atomic orbital electron populations 1.21887 0.91522 1.02563 1.03433 1.19370 0.96556 0.95367 0.85825 1.21896 1.01717 0.92290 1.03882 1.21870 1.01269 1.00500 0.95451 1.27024 0.92651 0.88653 0.93337 1.70236 1.22635 1.14724 1.14768 1.21660 0.99903 0.98034 0.93929 1.20459 0.91904 0.92169 0.95168 1.63448 1.36515 1.05985 1.19695 1.22687 0.99878 0.95008 0.89354 1.23051 1.00027 0.98024 0.96148 1.19889 0.78726 0.91515 0.90450 1.86149 1.24069 1.92687 1.36841 1.21765 1.40612 1.02504 0.95095 0.92567 1.25698 0.93803 0.98475 0.99025 1.69826 1.40701 1.29056 1.15407 0.85580 0.78711 0.79550 0.77568 1.19470 1.20650 1.20127 1.22912 0.98695 0.89084 0.95157 1.25267 1.06184 0.86674 0.96150 1.84424 1.54965 1.40886 1.28799 0.93232 0.88060 0.93174 0.91910 0.88405 0.92571 0.92938 0.88230 0.92346 0.91411 0.89843 0.93178 0.91689 0.93043 0.92551 0.78065 0.92218 0.92290 0.92316 0.74342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.46 71.98 0.61 -1.91 16 2 C 0.03 0.57 0.99 -52.93 -0.05 0.51 16 3 C -0.14 -1.93 8.02 71.98 0.58 -1.35 16 4 C -0.13 -2.10 8.46 71.98 0.61 -1.49 16 5 C 0.19 5.20 6.47 88.34 0.57 5.77 16 6 N -0.49 -16.32 11.29 -291.98 -3.30 -19.62 16 7 C -0.02 -0.50 6.16 41.26 0.25 -0.25 16 8 C 0.13 4.32 5.09 85.56 0.44 4.76 16 9 N -0.53 -21.46 5.15 -889.11 -4.58 -26.03 16 10 C 0.06 2.31 6.38 86.64 0.55 2.86 16 11 C -0.13 -6.20 5.36 31.77 0.17 -6.02 16 12 C 0.23 11.92 0.88 -9.99 -0.01 11.92 16 13 O -0.59 -32.43 13.16 -148.98 -1.96 -34.39 16 14 C -0.56 -30.41 8.28 25.60 0.21 -30.19 16 15 H 0.06 3.01 7.79 -2.91 -0.02 2.98 16 16 C 0.03 1.63 5.29 84.65 0.45 2.08 16 17 N -0.91 -49.07 10.75 21.45 0.23 -48.84 16 18 Si 0.96 42.16 29.54 68.60 2.03 44.18 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.07 3.07 5.89 86.94 0.51 3.58 16 23 C -0.07 -1.89 11.28 66.93 0.75 -1.14 16 24 O -0.20 -5.46 10.17 -3.69 -0.04 -5.49 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.96 7.96 -2.39 -0.02 1.94 16 35 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.13 6.48 -2.39 -0.02 2.12 16 38 H 0.05 2.39 8.03 -2.39 -0.02 2.37 16 39 H 0.06 2.82 7.53 -2.38 -0.02 2.80 16 40 H 0.37 20.55 7.56 -74.06 -0.56 19.99 16 41 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.06 2.45 7.71 -2.38 -0.02 2.43 16 44 H 0.24 4.50 7.87 -2.91 -0.02 4.48 16 Total: -1.00 -64.69 355.27 -1.55 -66.25 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.42 Total: 34.82 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.64 Total: -10.88 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -7.65 Total: -94.49 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -2.00 Total: -39.88 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -64.69 -1.55 -66.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930818303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.594 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds