Wall clock time and date at job start Tue Mar 31 2020 07:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47114 * 2 1 4 4 H 1.08997 * 110.53924 * 52.38481 * 3 2 1 5 5 C 1.54806 * 110.49100 * 289.76729 * 3 2 1 6 6 C 1.54995 * 102.09599 * 220.44707 * 5 3 2 7 7 O 1.44381 * 103.49011 * 37.02049 * 6 5 3 8 8 C 1.43742 * 106.97298 * 319.94092 * 7 6 5 9 9 H 1.08998 * 109.87850 * 266.93928 * 8 7 6 10 10 C 1.50704 * 109.87706 * 145.94034 * 8 7 6 11 11 O 1.21289 * 119.99805 * 356.45148 * 10 8 7 12 12 N 1.34774 * 120.00287 * 176.45623 * 10 8 7 13 13 C 1.46500 * 119.99998 * 180.02562 * 12 10 8 14 14 H 1.09001 * 115.51798 * 350.40798 * 13 12 10 15 15 C 1.52996 * 117.44197 * 204.99612 * 13 12 10 16 16 H 1.09008 * 119.53900 * 4.16246 * 15 13 12 17 17 C 1.54390 * 118.12381 * 160.85149 * 15 13 12 18 18 N 1.48145 * 104.61604 * 87.19422 * 17 15 13 19 19 C 1.36942 * 127.83571 * 140.39721 * 18 17 15 20 20 H 1.08001 * 119.99408 * 195.58858 * 19 18 17 21 21 C 1.38810 * 120.00144 * 15.58770 * 19 18 17 22 22 N 1.31620 * 119.99862 * 9.10557 * 21 19 18 23 23 Si 1.86797 * 119.99935 * 189.09981 * 21 19 18 24 24 H 1.48503 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47087 * 120.00201 * 23 21 19 26 26 H 1.48501 * 109.47100 * 240.00551 * 23 21 19 27 27 C 1.48140 * 104.32234 * 320.41350 * 18 17 15 28 28 C 1.52995 * 117.40517 * 135.77086 * 13 12 10 29 29 H 1.09002 * 119.54474 * 355.89507 * 28 13 12 30 30 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46825 * 300.00055 * 1 2 3 32 32 H 1.08997 * 109.46714 * 59.99475 * 1 2 3 33 33 H 1.08996 * 109.47277 * 240.00077 * 2 1 3 34 34 H 1.08997 * 109.47262 * 119.99754 * 2 1 3 35 35 H 1.08997 * 110.91172 * 102.24471 * 5 3 2 36 36 H 1.09009 * 110.93707 * 338.65449 * 5 3 2 37 37 H 1.09000 * 110.61302 * 278.52013 * 6 5 3 38 38 H 1.09003 * 110.62123 * 155.52452 * 6 5 3 39 39 H 0.97000 * 119.99714 * 359.97438 * 12 10 8 40 40 H 1.09001 * 110.40587 * 205.97707 * 17 15 13 41 41 H 1.08997 * 110.40934 * 328.40348 * 17 15 13 42 42 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.40859 * 280.79990 * 27 18 17 44 44 H 1.09002 * 110.40688 * 158.37457 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7583 2.1169 -1.3647 6 6 3.0604 2.9230 -1.6035 7 8 4.0921 2.0592 -1.0801 8 6 3.5756 1.4717 0.1258 9 1 3.8679 2.0738 0.9861 10 6 4.1039 0.0687 0.2793 11 8 4.7989 -0.4160 -0.5887 12 7 3.8042 -0.6476 1.3809 13 6 4.3183 -2.0113 1.5303 14 1 4.7949 -2.4330 0.6453 15 6 3.5322 -2.9665 2.4305 16 1 2.5921 -2.6367 2.8729 17 6 3.7664 -4.4832 2.2625 18 7 4.9184 -4.7835 3.1442 19 6 5.1010 -5.8803 3.9435 20 1 5.8527 -5.8643 4.7189 21 6 4.3200 -7.0126 3.7573 22 7 3.5323 -7.1032 2.7067 23 14 4.3869 -8.4077 4.9976 24 1 5.3437 -8.0626 6.0796 25 1 3.0367 -8.6186 5.5787 26 1 4.8341 -9.6513 4.3202 27 6 5.8278 -3.6278 2.9653 28 6 4.8913 -2.4024 2.8939 29 1 4.9639 -1.6524 3.6815 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.8962 2.7807 -1.3000 36 1 1.6142 1.3703 -2.1458 37 1 3.0343 3.8652 -1.0561 38 1 3.2120 3.1006 -2.6683 39 1 3.2487 -0.2599 2.0751 40 1 2.8868 -5.0415 2.5831 41 1 4.0096 -4.7178 1.2262 42 1 2.9863 -7.8943 2.5768 43 1 6.3930 -3.7287 2.0388 44 1 6.5036 -3.5406 3.8162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960367203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:12 Heat of formation + Delta-G solvation = -16.407777 kcal Electronic energy + Delta-G solvation = -24290.326749 eV Core-core repulsion = 20823.721905 eV Total energy + Delta-G solvation = -3466.604845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85555 -39.10707 -37.84728 -35.28018 -34.24324 -32.62915 -30.71922 -30.37055 -29.28423 -27.14727 -25.69646 -24.17609 -23.18026 -21.98457 -21.08453 -20.49613 -19.74768 -19.26364 -17.21121 -17.00308 -16.81971 -16.47123 -15.57987 -15.13529 -14.88319 -14.67931 -14.43670 -13.83240 -13.67132 -13.49044 -13.24620 -12.82247 -12.75387 -12.38439 -12.21640 -11.88258 -11.67391 -11.52434 -11.47728 -11.34929 -10.99406 -10.94169 -10.89711 -10.82718 -10.37828 -10.26806 -10.13306 -10.08033 -9.75130 -9.50822 -9.18654 -8.73443 -8.29808 -6.87255 -5.80517 -3.14671 2.58958 2.83730 3.37433 3.43510 3.46046 3.76950 4.08058 4.29720 4.33042 4.43650 4.48102 4.70251 4.85656 4.93109 5.06507 5.13524 5.15313 5.19330 5.32119 5.37013 5.37722 5.41208 5.52227 5.55911 5.58353 5.74374 5.82967 5.90644 5.92682 5.94447 6.11652 6.13046 6.21415 6.47503 6.53438 6.70072 6.81525 6.90156 7.34215 7.52218 7.54593 7.70899 8.19667 8.27533 9.10303 9.72975 10.49972 11.33909 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.003245 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.733490 B = 8627.267176 C = 9172.160617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.346 6.346 8 C 0.062 3.938 9 H 0.093 0.907 10 C 0.521 3.479 11 O -0.517 6.517 12 N -0.696 5.696 13 C 0.098 3.902 14 H 0.132 0.868 15 C -0.178 4.178 16 H 0.102 0.898 17 C 0.186 3.814 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.155 3.845 28 C -0.185 4.185 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.254 0.746 43 H 0.028 0.972 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 20.917 -4.469 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.264 6.264 8 C 0.001 3.999 9 H 0.111 0.889 10 C 0.306 3.694 11 O -0.391 6.391 12 N -0.348 5.348 13 C -0.008 4.008 14 H 0.149 0.851 15 C -0.199 4.199 16 H 0.120 0.880 17 C 0.060 3.940 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.028 3.972 28 C -0.207 4.207 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.234 0.766 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.205 20.260 -5.157 21.808 hybrid contribution -0.564 -0.329 1.147 1.320 sum -6.769 19.931 -4.010 21.428 Atomic orbital electron populations 1.21744 0.95165 1.02176 1.01470 1.22099 0.96733 0.94482 1.04417 1.22582 0.92947 0.98558 0.99024 0.88903 1.23243 0.98464 0.99886 0.97012 1.23638 0.86382 0.93159 1.00161 1.89022 1.37587 1.61023 1.38768 1.22742 0.93851 0.92746 0.90609 0.88945 1.20234 0.80282 0.86934 0.81970 1.90734 1.36702 1.71023 1.40620 1.45540 1.52828 1.14987 1.21484 1.21842 1.01600 0.81394 0.95926 0.85081 1.24687 0.94877 0.97692 1.02630 0.87990 1.21044 0.93387 0.86111 0.93485 1.45188 1.16461 1.19552 1.50455 1.19045 1.18241 0.89655 1.08526 0.90470 1.24902 1.00377 0.97381 0.97633 1.69907 1.30066 1.28902 1.27200 0.86038 0.77345 0.81937 0.80379 1.20369 1.21634 1.21671 1.21120 0.91759 0.85785 0.98498 1.24377 0.98662 1.00731 0.96913 0.87947 0.92202 0.92760 0.92910 0.91185 0.89566 0.89870 0.89954 0.91925 0.88564 0.76604 0.89057 0.95611 0.93591 0.95448 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.79 37.16 0.36 -0.86 16 2 C -0.14 -1.37 4.15 -26.73 -0.11 -1.48 16 3 C -0.11 -0.93 3.04 -89.09 -0.27 -1.20 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -1.11 6.03 -24.73 -0.15 -1.26 16 6 C 0.04 0.36 7.72 38.21 0.29 0.65 16 7 O -0.35 -4.49 10.74 -54.80 -0.59 -5.08 16 8 C 0.06 0.68 3.84 -27.31 -0.10 0.58 16 9 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.52 7.59 5.66 -10.98 -0.06 7.53 16 11 O -0.52 -10.10 16.09 -14.02 -0.23 -10.33 16 12 N -0.70 -9.11 3.76 -53.81 -0.20 -9.31 16 13 C 0.10 1.64 5.98 -67.93 -0.41 1.23 16 14 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 15 C -0.18 -3.26 7.05 -89.22 -0.63 -3.89 16 16 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 17 C 0.19 4.43 5.70 -2.41 -0.01 4.42 16 18 N -0.59 -15.20 3.38 -168.86 -0.57 -15.77 16 19 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 21 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 22 N -0.91 -26.68 10.87 55.49 0.60 -26.08 16 23 Si 0.91 21.84 29.56 -169.99 -5.03 16.82 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.16 3.30 7.04 -2.41 -0.02 3.28 16 28 C -0.19 -3.28 7.06 -89.22 -0.63 -3.91 16 29 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.05 0.39 7.62 -51.93 -0.40 -0.01 16 33 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 34 H 0.09 0.90 4.87 -51.93 -0.25 0.64 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.70 7.77 -51.92 -0.40 0.30 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.40 3.97 7.93 -40.82 -0.32 3.65 16 40 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -33.32 348.20 -9.86 -43.19 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.12 Total: 2.92 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.98 Total: -1.61 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.17 Total: -51.16 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.81 Total: -15.40 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.32 -9.86 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960367203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.779 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds