Wall clock time and date at job start Tue Mar 31 2020 07:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47114 * 2 1 4 4 H 1.08997 * 110.53924 * 52.38481 * 3 2 1 5 5 C 1.54806 * 110.49100 * 289.76729 * 3 2 1 6 6 C 1.54995 * 102.09599 * 220.44707 * 5 3 2 7 7 O 1.44381 * 103.49011 * 37.02049 * 6 5 3 8 8 C 1.43742 * 106.97298 * 319.94092 * 7 6 5 9 9 H 1.08998 * 109.87850 * 266.93928 * 8 7 6 10 10 C 1.50704 * 109.87706 * 145.94034 * 8 7 6 11 11 O 1.21289 * 119.99805 * 356.45148 * 10 8 7 12 12 N 1.34774 * 120.00287 * 176.45623 * 10 8 7 13 13 C 1.46500 * 119.99998 * 180.02562 * 12 10 8 14 14 H 1.09001 * 115.51798 * 350.40798 * 13 12 10 15 15 C 1.52996 * 117.44197 * 204.99612 * 13 12 10 16 16 H 1.09008 * 119.53900 * 4.16246 * 15 13 12 17 17 C 1.54390 * 118.12381 * 160.85149 * 15 13 12 18 18 N 1.48145 * 104.61604 * 87.19422 * 17 15 13 19 19 C 1.36942 * 127.83571 * 140.39721 * 18 17 15 20 20 H 1.08001 * 119.99408 * 195.58858 * 19 18 17 21 21 C 1.38810 * 120.00144 * 15.58770 * 19 18 17 22 22 N 1.31620 * 119.99862 * 9.10557 * 21 19 18 23 23 Si 1.86797 * 119.99935 * 189.09981 * 21 19 18 24 24 H 1.48503 * 109.46969 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47087 * 120.00201 * 23 21 19 26 26 H 1.48501 * 109.47100 * 240.00551 * 23 21 19 27 27 C 1.48140 * 104.32234 * 320.41350 * 18 17 15 28 28 C 1.52995 * 117.40517 * 135.77086 * 13 12 10 29 29 H 1.09002 * 119.54474 * 355.89507 * 28 13 12 30 30 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46825 * 300.00055 * 1 2 3 32 32 H 1.08997 * 109.46714 * 59.99475 * 1 2 3 33 33 H 1.08996 * 109.47277 * 240.00077 * 2 1 3 34 34 H 1.08997 * 109.47262 * 119.99754 * 2 1 3 35 35 H 1.08997 * 110.91172 * 102.24471 * 5 3 2 36 36 H 1.09009 * 110.93707 * 338.65449 * 5 3 2 37 37 H 1.09000 * 110.61302 * 278.52013 * 6 5 3 38 38 H 1.09003 * 110.62123 * 155.52452 * 6 5 3 39 39 H 0.97000 * 119.99714 * 359.97438 * 12 10 8 40 40 H 1.09001 * 110.40587 * 205.97707 * 17 15 13 41 41 H 1.08997 * 110.40934 * 328.40348 * 17 15 13 42 42 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.40859 * 280.79990 * 27 18 17 44 44 H 1.09002 * 110.40688 * 158.37457 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7583 2.1169 -1.3647 6 6 3.0604 2.9230 -1.6035 7 8 4.0921 2.0592 -1.0801 8 6 3.5756 1.4717 0.1258 9 1 3.8679 2.0738 0.9861 10 6 4.1039 0.0687 0.2793 11 8 4.7989 -0.4160 -0.5887 12 7 3.8042 -0.6476 1.3809 13 6 4.3183 -2.0113 1.5303 14 1 4.7949 -2.4330 0.6453 15 6 3.5322 -2.9665 2.4305 16 1 2.5921 -2.6367 2.8729 17 6 3.7664 -4.4832 2.2625 18 7 4.9184 -4.7835 3.1442 19 6 5.1010 -5.8803 3.9435 20 1 5.8527 -5.8643 4.7189 21 6 4.3200 -7.0126 3.7573 22 7 3.5323 -7.1032 2.7067 23 14 4.3869 -8.4077 4.9976 24 1 5.3437 -8.0626 6.0796 25 1 3.0367 -8.6186 5.5787 26 1 4.8341 -9.6513 4.3202 27 6 5.8278 -3.6278 2.9653 28 6 4.8913 -2.4024 2.8939 29 1 4.9639 -1.6524 3.6815 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.8962 2.7807 -1.3000 36 1 1.6142 1.3703 -2.1458 37 1 3.0343 3.8652 -1.0561 38 1 3.2120 3.1006 -2.6683 39 1 3.2487 -0.2599 2.0751 40 1 2.8868 -5.0415 2.5831 41 1 4.0096 -4.7178 1.2262 42 1 2.9863 -7.8943 2.5768 43 1 6.3930 -3.7287 2.0388 44 1 6.5036 -3.5406 3.8162 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960367203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:12 Heat of formation + Delta-G solvation = -37.898559 kcal Electronic energy + Delta-G solvation = -24291.258660 eV Core-core repulsion = 20823.721905 eV Total energy + Delta-G solvation = -3467.536755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85434 -40.46148 -39.11133 -36.38335 -35.62243 -34.23504 -32.27054 -31.22859 -30.24198 -28.93441 -27.58770 -25.07998 -24.05578 -23.24526 -22.21206 -21.99416 -20.96387 -20.73270 -18.88360 -18.17996 -17.85623 -17.60775 -16.80948 -16.52185 -16.09751 -15.69869 -15.50760 -15.34164 -15.00471 -14.66809 -14.56150 -14.35992 -13.77763 -13.54487 -13.36231 -13.26234 -13.06258 -12.88670 -12.75483 -12.56757 -12.26468 -12.10897 -12.07770 -12.00902 -11.91190 -11.73500 -11.62635 -11.41163 -11.10807 -10.87918 -10.73094 -10.49514 -9.66318 -8.93806 -7.92747 -5.29941 1.45440 1.47184 1.47562 1.59064 1.74083 2.47639 2.81901 3.00072 3.27311 3.36075 3.52269 3.62770 3.71456 3.81720 3.91514 3.98909 4.12604 4.22151 4.29081 4.36998 4.41002 4.48350 4.49798 4.53922 4.74859 4.78459 4.84214 4.87739 4.88797 4.97192 5.00260 5.14072 5.22777 5.26125 5.27276 5.38976 5.42539 5.43505 5.51789 5.63274 5.81438 6.15364 6.48080 6.99189 7.17622 7.65831 8.44311 9.21311 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.003245 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.733490 B = 8627.267176 C = 9172.160617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C -0.104 4.104 4 H 0.134 0.866 5 C -0.145 4.145 6 C 0.037 3.963 7 O -0.388 6.388 8 C 0.065 3.935 9 H 0.128 0.872 10 C 0.517 3.483 11 O -0.577 6.577 12 N -0.676 5.676 13 C 0.116 3.884 14 H 0.098 0.902 15 C -0.172 4.172 16 H 0.132 0.868 17 C 0.189 3.811 18 N -0.616 5.616 19 C -0.242 4.242 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.264 1.264 25 H -0.288 1.288 26 H -0.294 1.294 27 C 0.147 3.853 28 C -0.167 4.167 29 H 0.139 0.861 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.420 0.580 40 H 0.061 0.939 41 H -0.008 1.008 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 23.992 -2.447 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C -0.122 4.122 4 H 0.152 0.848 5 C -0.183 4.183 6 C -0.038 4.038 7 O -0.307 6.307 8 C 0.004 3.996 9 H 0.145 0.855 10 C 0.305 3.695 11 O -0.455 6.455 12 N -0.329 5.329 13 C 0.009 3.991 14 H 0.116 0.884 15 C -0.193 4.193 16 H 0.149 0.851 17 C 0.063 3.937 18 N -0.340 5.340 19 C -0.370 4.370 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.215 1.215 26 H -0.221 1.221 27 C 0.021 3.979 28 C -0.188 4.188 29 H 0.157 0.843 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.260 0.740 40 H 0.079 0.921 41 H 0.010 0.990 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.419 23.393 -3.106 24.737 hybrid contribution -0.135 -1.284 0.407 1.354 sum -7.554 22.109 -2.699 23.519 Atomic orbital electron populations 1.21716 0.93706 1.01768 1.02960 1.22045 0.98006 0.95449 1.02196 1.22660 0.90942 0.97752 1.00883 0.84845 1.23253 0.99300 0.99784 0.95931 1.23905 0.85566 0.93620 1.00748 1.88987 1.39815 1.62055 1.39801 1.22941 0.95331 0.90016 0.91340 0.85495 1.21138 0.79041 0.88403 0.80937 1.90712 1.39515 1.72575 1.42659 1.45286 1.52501 1.13140 1.21984 1.21320 1.00473 0.82973 0.94351 0.88415 1.24350 0.96650 0.94173 1.04098 0.85051 1.20775 0.91860 0.89760 0.91294 1.45494 1.17988 1.20276 1.50288 1.19447 1.18144 0.90611 1.08810 0.89902 1.25777 1.00361 0.99969 0.99514 1.70111 1.31005 1.29384 1.29063 0.84958 0.77444 0.78323 0.78237 1.18775 1.21465 1.22086 1.21254 0.92215 0.86093 0.98320 1.24289 0.96430 0.99901 0.98194 0.84298 0.93665 0.90576 0.92035 0.94973 0.90233 0.86661 0.91940 0.89122 0.88365 0.74031 0.92066 0.99039 0.94082 0.96812 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.79 71.98 0.70 -1.33 16 2 C -0.14 -2.51 4.15 30.59 0.13 -2.38 16 3 C -0.10 -1.35 3.04 -9.81 -0.03 -1.38 16 4 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.15 -1.75 6.03 31.89 0.19 -1.56 16 6 C 0.04 0.52 7.72 72.66 0.56 1.09 16 7 O -0.39 -9.53 10.74 -130.27 -1.40 -10.93 16 8 C 0.06 1.25 3.84 30.22 0.12 1.37 16 9 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 10 C 0.52 14.70 5.66 87.66 0.50 15.20 16 11 O -0.58 -23.36 16.09 15.65 0.25 -23.11 16 12 N -0.68 -16.51 3.76 -442.53 -1.66 -18.17 16 13 C 0.12 3.85 5.98 44.99 0.27 4.12 16 14 H 0.10 4.01 7.40 -2.39 -0.02 4.00 16 15 C -0.17 -6.22 7.05 -9.89 -0.07 -6.28 16 16 H 0.13 4.02 8.14 -2.38 -0.02 4.00 16 17 C 0.19 9.42 5.70 86.53 0.49 9.92 16 18 N -0.62 -32.32 3.38 -688.16 -2.33 -34.65 16 19 C -0.24 -13.63 10.35 84.03 0.87 -12.76 16 20 H 0.08 4.46 7.85 -2.91 -0.02 4.43 16 21 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 22 N -0.95 -57.39 10.87 21.65 0.24 -57.15 16 23 Si 0.98 45.47 29.56 68.60 2.03 47.50 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 C 0.15 6.28 7.04 86.54 0.61 6.88 16 28 C -0.17 -5.64 7.06 -9.89 -0.07 -5.71 16 29 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.76 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.76 7.62 -2.39 -0.02 0.74 16 33 H 0.03 0.81 7.70 -2.39 -0.02 0.79 16 34 H 0.08 1.49 4.87 -2.39 -0.01 1.48 16 35 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 1.00 7.77 -2.38 -0.02 0.98 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.42 6.81 7.93 -92.71 -0.74 6.08 16 40 H 0.06 3.40 6.51 -2.39 -0.02 3.38 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -78.02 348.20 2.11 -75.91 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.26 Total: 16.53 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 4.73 Total: 4.07 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.75 Total: -109.97 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.15 Total: -34.04 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -78.02 2.11 -75.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960367203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.007 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds