Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.77975 * 2 1 4 4 C 1.54327 * 110.72416 * 236.75955 * 2 1 3 5 5 N 1.47015 * 107.27224 * 219.44432 * 4 2 1 6 6 C 1.36943 * 125.64719 * 178.89230 * 5 4 2 7 7 H 1.07994 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99824 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00330 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47084 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47428 * 119.99887 * 10 8 6 13 13 H 1.48496 * 109.47034 * 239.99739 * 10 8 6 14 14 C 1.47422 * 108.70540 * 358.93897 * 5 4 2 15 15 C 1.54906 * 104.83284 * 24.12812 * 14 5 4 16 16 H 1.09000 * 111.03945 * 204.89940 * 15 14 5 17 17 N 1.46504 * 111.00538 * 81.06220 * 15 14 5 18 18 C 1.34777 * 119.99854 * 92.80255 * 17 15 14 19 19 O 1.21743 * 120.00050 * 0.02562 * 18 17 15 20 20 C 1.41797 * 120.00053 * 180.27916 * 18 17 15 21 21 C 1.33456 * 118.78971 * 179.73083 * 20 18 17 22 22 O 1.34344 * 123.08410 * 180.41399 * 21 20 18 23 23 C 1.45358 * 117.47951 * 343.64632 * 22 21 20 24 24 C 1.53480 * 108.26687 * 47.47537 * 23 22 21 25 25 C 1.50421 * 118.78463 * 359.45289 * 20 18 17 26 26 H 1.08998 * 109.47138 * 296.76174 * 1 2 3 27 27 H 1.09004 * 109.46811 * 56.76555 * 1 2 3 28 28 H 1.09003 * 109.47087 * 176.75873 * 1 2 3 29 29 H 1.08998 * 109.47029 * 183.23644 * 3 2 1 30 30 H 1.08991 * 109.47113 * 303.23588 * 3 2 1 31 31 H 1.08998 * 109.46785 * 63.23814 * 3 2 1 32 32 H 1.09002 * 109.87627 * 338.86267 * 4 2 1 33 33 H 1.09001 * 109.87926 * 99.87161 * 4 2 1 34 34 H 0.97001 * 120.00114 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.36655 * 265.28953 * 14 5 4 36 36 H 1.09003 * 110.36730 * 142.96405 * 14 5 4 37 37 H 0.97000 * 120.00410 * 272.80980 * 17 15 14 38 38 H 1.08005 * 118.45945 * 0.38574 * 21 20 18 39 39 H 1.09000 * 109.70778 * 167.16987 * 23 22 21 40 40 H 1.08999 * 109.70532 * 287.74091 * 23 22 21 41 41 H 1.09005 * 109.70318 * 56.98626 * 24 23 22 42 42 H 1.09000 * 109.70968 * 177.56543 * 24 23 22 43 43 H 1.08995 * 109.45553 * 282.37969 * 25 20 18 44 44 H 1.09000 * 109.45142 * 42.33159 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0034 -2.3982 -1.5013 7 1 3.7598 -2.5525 -2.5420 8 6 5.0856 -3.0587 -0.9363 9 7 5.3828 -2.8702 0.3319 10 14 6.1212 -4.2142 -1.9764 11 1 5.5837 -4.2506 -3.3603 12 1 7.5254 -3.7314 -2.0039 13 1 6.0784 -5.5787 -1.3922 14 6 3.4633 -1.2497 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 2.1843 -0.1519 2.0873 17 7 1.2271 -1.9487 1.5145 18 6 1.2025 -2.4617 2.7605 19 8 1.8879 -1.9664 3.6364 20 6 0.3825 -3.5817 3.0501 21 6 0.3808 -4.0734 4.2908 22 8 -0.3559 -5.1351 4.6579 23 6 -1.4388 -5.5374 3.7756 24 6 -0.8977 -5.5843 2.3401 25 6 -0.4583 -4.1678 1.9491 26 1 -0.3633 0.4627 0.9176 27 1 -0.3633 0.5633 -0.8596 28 1 -0.3633 -1.0260 -0.0581 29 1 3.1609 1.4062 -0.0580 30 1 1.6751 1.9700 -0.8595 31 1 1.7690 1.9343 0.9176 32 1 1.3130 -1.4758 -1.5775 33 1 2.3716 -0.1025 -1.9987 34 1 6.1389 -3.3321 0.7268 35 1 4.1931 -0.4478 0.7985 36 1 3.7960 -2.1426 1.2170 37 1 0.6808 -2.3433 0.8167 38 1 1.0013 -3.5956 5.0346 39 1 -1.8009 -6.5242 4.0642 40 1 -2.2523 -4.8146 3.8389 41 1 -0.0466 -6.2635 2.2902 42 1 -1.6806 -5.9257 1.6630 43 1 -1.3368 -3.5424 1.7910 44 1 0.1263 -4.2116 1.0301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972852126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -37.242829 kcal Electronic energy + Delta-G solvation = -25171.107827 eV Core-core repulsion = 21703.599507 eV Total energy + Delta-G solvation = -3467.508320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48028 -39.27202 -37.75958 -34.29196 -33.70207 -32.73645 -31.51417 -30.66070 -28.08525 -26.81317 -25.76143 -25.58187 -24.33526 -23.02259 -21.20581 -20.00435 -18.93840 -18.50922 -17.58564 -16.68601 -16.30824 -15.70409 -15.34649 -14.96513 -14.53227 -14.35487 -13.89747 -13.81348 -13.69139 -13.42193 -13.17449 -13.14234 -12.64714 -12.56439 -12.11683 -11.87076 -11.68660 -11.34328 -11.25113 -11.13942 -11.03695 -10.94691 -10.77521 -10.69173 -10.35335 -10.14290 -9.89652 -9.75314 -9.65455 -9.31964 -8.65019 -8.47637 -8.13412 -6.77175 -5.59745 -3.02944 1.63821 3.19099 3.40830 3.45810 3.48951 3.80512 3.99214 4.50933 4.56452 4.63072 4.81383 5.04861 5.08086 5.19195 5.28977 5.32509 5.33887 5.51732 5.55037 5.55718 5.68105 5.80838 5.86821 5.92558 5.97170 6.07543 6.12417 6.15109 6.23205 6.30446 6.32762 6.48212 6.52496 6.66850 6.74217 6.84446 7.09356 7.27013 7.57075 7.66381 7.93764 8.19469 8.43664 8.88009 9.25408 9.87036 10.51548 11.42634 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.005798 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.641538 B = 4827.769718 C = 6064.011801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.087 0.913 17 N -0.698 5.698 18 C 0.569 3.431 19 O -0.566 6.566 20 C -0.302 4.302 21 C 0.145 3.855 22 O -0.314 6.314 23 C 0.054 3.946 24 C -0.156 4.156 25 C -0.075 4.075 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.112 0.888 37 H 0.395 0.605 38 H 0.180 0.820 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 -0.709 3.893 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.185 4.185 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.020 3.980 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.348 5.348 18 C 0.360 3.640 19 O -0.448 6.448 20 C -0.307 4.307 21 C 0.078 3.922 22 O -0.226 6.226 23 C -0.021 4.021 24 C -0.194 4.194 25 C -0.112 4.112 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.130 0.870 37 H 0.230 0.770 38 H 0.196 0.804 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.322 -0.624 4.661 16.027 hybrid contribution 0.352 -0.685 -1.302 1.512 sum -14.970 -1.308 3.359 15.398 Atomic orbital electron populations 1.21696 0.94728 1.01103 1.01123 1.21852 0.94769 0.95746 0.96625 1.21678 1.01897 0.94174 1.00786 1.21392 0.90256 0.92923 0.93660 1.44469 1.30647 1.50141 1.07427 1.19064 1.06407 1.16923 0.92864 0.90586 1.24791 0.98779 1.00627 0.96327 1.69828 1.29851 1.45905 1.10788 0.86056 0.80219 0.80501 0.79042 1.20621 1.21785 1.21867 1.22306 0.89367 1.01295 0.84983 1.22480 0.93199 0.86382 0.96108 0.89498 1.45685 1.45655 1.32890 1.10588 1.16468 0.81675 0.83148 0.82750 1.90775 1.44707 1.62757 1.46558 1.20114 1.09701 1.04775 0.96087 1.22915 0.89464 0.84156 0.95689 1.86253 1.43444 1.44212 1.48643 1.23503 0.87696 1.01263 0.89608 1.22210 1.02557 0.98223 0.96415 1.20310 0.98707 0.94960 0.97250 0.92895 0.92876 0.93046 0.91774 0.92812 0.93100 0.96272 0.95958 0.93773 0.96304 0.86999 0.76966 0.80374 0.87684 0.91104 0.90164 0.89737 0.90969 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.07 37.16 0.30 -1.45 16 2 C -0.09 -1.51 0.80 -152.67 -0.12 -1.63 16 3 C -0.13 -1.98 8.41 37.16 0.31 -1.67 16 4 C 0.14 2.91 6.41 -3.07 -0.02 2.89 16 5 N -0.60 -15.14 3.39 -170.08 -0.58 -15.72 16 6 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.40 10.09 55.49 0.56 -26.84 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.15 3.65 5.27 -2.53 -0.01 3.64 16 15 C 0.12 2.47 2.67 -65.78 -0.18 2.30 16 16 H 0.09 1.78 7.44 -51.93 -0.39 1.40 16 17 N -0.70 -12.79 4.46 -54.56 -0.24 -13.03 16 18 C 0.57 10.79 7.53 -14.90 -0.11 10.67 16 19 O -0.57 -12.58 15.55 5.15 0.08 -12.50 16 20 C -0.30 -4.61 5.69 -105.07 -0.60 -5.21 16 21 C 0.15 2.06 10.46 29.06 0.30 2.36 16 22 O -0.31 -3.90 10.48 -14.87 -0.16 -4.05 16 23 C 0.05 0.48 7.15 37.41 0.27 0.74 16 24 C -0.16 -1.52 6.24 -26.29 -0.16 -1.68 16 25 C -0.08 -0.90 5.10 -27.83 -0.14 -1.05 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.67 6.48 -51.93 -0.34 0.33 16 29 H 0.06 1.13 7.57 -51.93 -0.39 0.73 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 33 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.02 0.51 7.80 -51.93 -0.41 0.11 16 36 H 0.11 3.27 5.87 -51.93 -0.30 2.96 16 37 H 0.39 6.57 5.28 -40.82 -0.22 6.35 16 38 H 0.18 2.57 7.21 -52.48 -0.38 2.19 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.11 7.13 -51.93 -0.37 0.74 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -32.84 344.23 -7.54 -40.38 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.95 Total: 6.05 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.41 Total: 3.19 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.26 Total: -55.58 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.08 Total: -16.55 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.84 -7.54 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972852126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.135 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds