Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.77975 * 2 1 4 4 C 1.54327 * 110.72416 * 236.75955 * 2 1 3 5 5 N 1.47015 * 107.27224 * 219.44432 * 4 2 1 6 6 C 1.36943 * 125.64719 * 178.89230 * 5 4 2 7 7 H 1.07994 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99824 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00330 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47084 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47428 * 119.99887 * 10 8 6 13 13 H 1.48496 * 109.47034 * 239.99739 * 10 8 6 14 14 C 1.47422 * 108.70540 * 358.93897 * 5 4 2 15 15 C 1.54906 * 104.83284 * 24.12812 * 14 5 4 16 16 H 1.09000 * 111.03945 * 204.89940 * 15 14 5 17 17 N 1.46504 * 111.00538 * 81.06220 * 15 14 5 18 18 C 1.34777 * 119.99854 * 92.80255 * 17 15 14 19 19 O 1.21743 * 120.00050 * 0.02562 * 18 17 15 20 20 C 1.41797 * 120.00053 * 180.27916 * 18 17 15 21 21 C 1.33456 * 118.78971 * 179.73083 * 20 18 17 22 22 O 1.34344 * 123.08410 * 180.41399 * 21 20 18 23 23 C 1.45358 * 117.47951 * 343.64632 * 22 21 20 24 24 C 1.53480 * 108.26687 * 47.47537 * 23 22 21 25 25 C 1.50421 * 118.78463 * 359.45289 * 20 18 17 26 26 H 1.08998 * 109.47138 * 296.76174 * 1 2 3 27 27 H 1.09004 * 109.46811 * 56.76555 * 1 2 3 28 28 H 1.09003 * 109.47087 * 176.75873 * 1 2 3 29 29 H 1.08998 * 109.47029 * 183.23644 * 3 2 1 30 30 H 1.08991 * 109.47113 * 303.23588 * 3 2 1 31 31 H 1.08998 * 109.46785 * 63.23814 * 3 2 1 32 32 H 1.09002 * 109.87627 * 338.86267 * 4 2 1 33 33 H 1.09001 * 109.87926 * 99.87161 * 4 2 1 34 34 H 0.97001 * 120.00114 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.36655 * 265.28953 * 14 5 4 36 36 H 1.09003 * 110.36730 * 142.96405 * 14 5 4 37 37 H 0.97000 * 120.00410 * 272.80980 * 17 15 14 38 38 H 1.08005 * 118.45945 * 0.38574 * 21 20 18 39 39 H 1.09000 * 109.70778 * 167.16987 * 23 22 21 40 40 H 1.08999 * 109.70532 * 287.74091 * 23 22 21 41 41 H 1.09005 * 109.70318 * 56.98626 * 24 23 22 42 42 H 1.09000 * 109.70968 * 177.56543 * 24 23 22 43 43 H 1.08995 * 109.45553 * 282.37969 * 25 20 18 44 44 H 1.09000 * 109.45142 * 42.33159 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0034 -2.3982 -1.5013 7 1 3.7598 -2.5525 -2.5420 8 6 5.0856 -3.0587 -0.9363 9 7 5.3828 -2.8702 0.3319 10 14 6.1212 -4.2142 -1.9764 11 1 5.5837 -4.2506 -3.3603 12 1 7.5254 -3.7314 -2.0039 13 1 6.0784 -5.5787 -1.3922 14 6 3.4633 -1.2497 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 2.1843 -0.1519 2.0873 17 7 1.2271 -1.9487 1.5145 18 6 1.2025 -2.4617 2.7605 19 8 1.8879 -1.9664 3.6364 20 6 0.3825 -3.5817 3.0501 21 6 0.3808 -4.0734 4.2908 22 8 -0.3559 -5.1351 4.6579 23 6 -1.4388 -5.5374 3.7756 24 6 -0.8977 -5.5843 2.3401 25 6 -0.4583 -4.1678 1.9491 26 1 -0.3633 0.4627 0.9176 27 1 -0.3633 0.5633 -0.8596 28 1 -0.3633 -1.0260 -0.0581 29 1 3.1609 1.4062 -0.0580 30 1 1.6751 1.9700 -0.8595 31 1 1.7690 1.9343 0.9176 32 1 1.3130 -1.4758 -1.5775 33 1 2.3716 -0.1025 -1.9987 34 1 6.1389 -3.3321 0.7268 35 1 4.1931 -0.4478 0.7985 36 1 3.7960 -2.1426 1.2170 37 1 0.6808 -2.3433 0.8167 38 1 1.0013 -3.5956 5.0346 39 1 -1.8009 -6.5242 4.0642 40 1 -2.2523 -4.8146 3.8389 41 1 -0.0466 -6.2635 2.2902 42 1 -1.6806 -5.9257 1.6630 43 1 -1.3368 -3.5424 1.7910 44 1 0.1263 -4.2116 1.0301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972852126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -59.369098 kcal Electronic energy + Delta-G solvation = -25172.067294 eV Core-core repulsion = 21703.599507 eV Total energy + Delta-G solvation = -3468.467787 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71817 -40.61583 -39.27757 -35.71479 -35.29491 -34.14922 -32.60911 -32.52535 -29.79167 -28.07091 -27.42392 -26.66521 -25.71575 -24.48602 -22.63003 -21.71839 -20.36843 -19.65165 -18.79649 -18.69995 -17.64044 -16.86145 -16.76655 -16.54130 -15.98821 -15.71570 -15.54985 -15.25594 -14.91559 -14.63797 -14.58366 -14.20243 -13.99491 -13.74802 -13.62904 -13.55697 -13.03502 -13.01008 -12.84891 -12.63056 -12.57560 -12.24906 -12.05103 -11.79558 -11.78395 -11.75129 -11.62408 -11.42990 -11.34388 -10.87381 -10.73444 -9.95067 -9.44091 -8.83887 -7.75333 -5.20849 0.42216 1.43444 1.44657 1.55032 2.22231 2.36884 2.48291 2.61519 3.34073 3.59012 3.69690 3.74650 3.78078 3.97031 3.99030 4.09214 4.23917 4.30122 4.39624 4.43828 4.54005 4.59365 4.74606 4.78521 4.84046 4.88294 4.91979 4.93107 5.05029 5.11053 5.12075 5.18726 5.20935 5.27051 5.32482 5.33868 5.48930 5.53939 5.74542 5.85555 6.24169 6.31505 6.73763 7.09261 7.40895 7.79265 8.43415 9.25224 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.005798 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.641538 B = 4827.769718 C = 6064.011801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.126 4.126 4 C 0.139 3.861 5 N -0.617 5.617 6 C -0.231 4.231 7 H 0.085 0.915 8 C -0.070 4.070 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.261 1.261 12 H -0.296 1.296 13 H -0.295 1.295 14 C 0.155 3.845 15 C 0.135 3.865 16 H 0.078 0.922 17 N -0.691 5.691 18 C 0.562 3.438 19 O -0.610 6.610 20 C -0.323 4.323 21 C 0.164 3.836 22 O -0.319 6.319 23 C 0.047 3.953 24 C -0.152 4.152 25 C -0.072 4.072 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.242 0.758 35 H -0.016 1.016 36 H 0.067 0.933 37 H 0.405 0.595 38 H 0.168 0.832 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.364 -1.213 2.602 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.183 4.183 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.360 4.360 7 H 0.103 0.897 8 C -0.263 4.263 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.185 1.185 12 H -0.224 1.224 13 H -0.223 1.223 14 C 0.029 3.971 15 C 0.028 3.972 16 H 0.096 0.904 17 N -0.341 5.341 18 C 0.355 3.645 19 O -0.496 6.496 20 C -0.328 4.328 21 C 0.095 3.905 22 O -0.230 6.230 23 C -0.025 4.025 24 C -0.190 4.190 25 C -0.109 4.109 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.001 0.999 36 H 0.085 0.915 37 H 0.242 0.758 38 H 0.185 0.815 39 H 0.153 0.847 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.751 -1.131 3.323 19.076 hybrid contribution 1.382 -0.548 -0.868 1.722 sum -17.368 -1.679 2.455 17.621 Atomic orbital electron populations 1.21662 0.91118 1.02233 1.02910 1.21842 0.97446 0.95426 0.92908 1.21682 0.99971 0.93702 1.02972 1.21633 0.88817 0.93073 0.95076 1.44688 1.31795 1.50376 1.07432 1.19486 1.06427 1.16590 0.93461 0.89684 1.25646 1.00455 1.02743 0.97424 1.70143 1.30084 1.47127 1.12591 0.85015 0.78085 0.77923 0.78359 1.18541 1.22357 1.22270 1.21935 0.91800 0.98105 0.85304 1.22150 0.91089 0.87062 0.96870 0.90430 1.45573 1.45166 1.32514 1.10868 1.17096 0.81469 0.83660 0.82321 1.90745 1.46743 1.64300 1.47772 1.20101 1.10759 1.04264 0.97691 1.22795 0.88743 0.83886 0.95083 1.86250 1.44029 1.42936 1.49799 1.23909 0.86762 1.03420 0.88458 1.22219 1.02911 0.96141 0.97695 1.20347 0.98675 0.96810 0.95107 0.91764 0.90330 0.92401 0.94851 0.90081 0.91370 0.94759 0.95599 0.94841 0.99853 0.91546 0.75768 0.81525 0.84678 0.89092 0.91930 0.86474 0.88619 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.07 71.98 0.58 -2.28 16 2 C -0.08 -2.44 0.80 -50.99 -0.04 -2.48 16 3 C -0.13 -3.72 8.41 71.98 0.61 -3.12 16 4 C 0.14 5.47 6.41 86.73 0.56 6.02 16 5 N -0.62 -31.75 3.39 -692.01 -2.35 -34.10 16 6 C -0.23 -12.97 10.27 84.03 0.86 -12.11 16 7 H 0.09 4.53 7.83 -2.91 -0.02 4.50 16 8 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 9 N -0.95 -59.83 10.09 21.65 0.22 -59.61 16 10 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 14 C 0.15 8.19 5.27 86.85 0.46 8.65 16 15 C 0.14 5.49 2.67 46.38 0.12 5.62 16 16 H 0.08 3.31 7.44 -2.39 -0.02 3.29 16 17 N -0.69 -25.50 4.46 -444.73 -1.98 -27.48 16 18 C 0.56 21.85 7.53 85.12 0.64 22.49 16 19 O -0.61 -28.54 15.55 -4.49 -0.07 -28.61 16 20 C -0.32 -9.78 5.69 -20.16 -0.11 -9.89 16 21 C 0.16 4.60 10.46 66.74 0.70 5.30 16 22 O -0.32 -7.35 10.48 -76.13 -0.80 -8.15 16 23 C 0.05 0.68 7.15 72.14 0.52 1.20 16 24 C -0.15 -2.51 6.24 30.88 0.19 -2.32 16 25 C -0.07 -1.60 5.10 29.88 0.15 -1.45 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.30 6.48 -2.39 -0.02 1.28 16 29 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.27 7.76 -2.39 -0.02 1.25 16 33 H 0.03 1.02 7.84 -2.39 -0.02 1.00 16 34 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 35 H -0.02 -0.95 7.80 -2.39 -0.02 -0.97 16 36 H 0.07 4.15 5.87 -2.39 -0.01 4.14 16 37 H 0.40 13.12 5.28 -92.71 -0.49 12.63 16 38 H 0.17 5.00 7.21 -2.91 -0.02 4.98 16 39 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.69 7.13 -2.39 -0.02 1.67 16 Total: -1.00 -76.37 344.23 3.25 -73.12 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.50 Total: 23.88 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.70 Total: 11.98 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -4.11 Total: -121.18 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.87 Total: -36.76 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -76.37 3.25 -73.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972852126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds