Wall clock time and date at job start Tue Mar 31 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.88947 * 2 1 4 4 C 1.55136 * 111.19157 * 236.06780 * 2 1 3 5 5 N 1.47418 * 104.72002 * 279.19217 * 4 2 1 6 6 C 1.34783 * 125.64843 * 155.81731 * 5 4 2 7 7 O 1.21743 * 119.99374 * 4.87629 * 6 5 4 8 8 C 1.41792 * 120.00353 * 184.87516 * 6 5 4 9 9 C 1.33460 * 118.78445 * 75.29019 * 8 6 5 10 10 O 1.34435 * 123.10187 * 180.37923 * 9 8 6 11 11 C 1.45363 * 117.42435 * 343.70675 * 10 9 8 12 12 C 1.53482 * 108.29865 * 47.45775 * 11 10 9 13 13 C 1.50417 * 118.78857 * 255.27290 * 8 6 5 14 14 C 1.47017 * 108.70598 * 335.54893 * 5 4 2 15 15 C 1.54321 * 107.27286 * 1.29293 * 14 5 4 16 16 H 1.09003 * 110.71847 * 263.83066 * 15 14 5 17 17 N 1.46495 * 110.72491 * 140.72985 * 15 14 5 18 18 C 1.36942 * 120.00021 * 86.45223 * 17 15 14 19 19 H 1.08003 * 119.99700 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00250 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47099 * 120.00329 * 22 20 18 25 25 H 1.48496 * 109.46955 * 240.00193 * 22 20 18 26 26 H 1.09009 * 109.46843 * 296.11516 * 1 2 3 27 27 H 1.08993 * 109.47014 * 56.11887 * 1 2 3 28 28 H 1.08997 * 109.46970 * 176.12525 * 1 2 3 29 29 H 1.09001 * 109.47491 * 183.88029 * 3 2 1 30 30 H 1.09000 * 109.47114 * 303.88245 * 3 2 1 31 31 H 1.08998 * 109.47285 * 63.88094 * 3 2 1 32 32 H 1.08999 * 110.49743 * 160.35069 * 4 2 1 33 33 H 1.09002 * 110.34077 * 37.95305 * 4 2 1 34 34 H 1.07999 * 118.45933 * 0.42167 * 9 8 6 35 35 H 1.09000 * 109.69910 * 287.74328 * 11 10 9 36 36 H 1.08999 * 109.70341 * 167.16940 * 11 10 9 37 37 H 1.09002 * 109.70579 * 56.96416 * 12 11 10 38 38 H 1.08998 * 109.70770 * 177.58904 * 12 11 10 39 39 H 1.08997 * 109.45187 * 42.32310 * 13 8 6 40 40 H 1.09001 * 109.43916 * 282.36974 * 13 8 6 41 41 H 1.09011 * 109.87994 * 120.70751 * 14 5 4 42 42 H 1.08998 * 109.88946 * 241.71409 * 14 5 4 43 43 H 0.97000 * 120.00261 * 266.45618 * 17 15 14 44 44 H 0.97006 * 119.99955 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2161 -0.7725 6 6 1.9470 -3.2835 -1.5928 7 8 2.0365 -3.1318 -2.7975 8 6 1.7726 -4.5829 -1.0528 9 6 0.5668 -4.9349 -0.6020 10 8 0.3062 -6.1403 -0.0668 11 6 1.2700 -7.2018 -0.3064 12 6 2.6740 -6.6510 -0.0215 13 6 2.9532 -5.5139 -1.0096 14 6 2.0286 -2.2644 0.6968 15 6 2.0862 -0.8075 1.2025 16 1 3.1134 -0.5155 1.4211 17 7 1.2376 -0.6350 2.3842 18 6 1.7369 -0.9036 3.6308 19 1 2.7564 -1.2421 3.7427 20 6 0.9332 -0.7396 4.7505 21 7 -0.3091 -0.3266 4.6141 22 14 1.6145 -1.1052 6.4510 23 1 3.0262 -1.5506 6.3333 24 1 1.5510 0.1224 7.2841 25 1 0.8080 -2.1775 7.0873 26 1 -0.3633 0.4524 0.9228 27 1 -0.3633 0.5729 -0.8531 28 1 -0.3633 -1.0253 -0.0694 29 1 3.1630 1.4033 -0.0695 30 1 1.6698 1.9731 -0.8531 31 1 1.7824 1.9302 0.9227 32 1 3.1253 -0.5272 -1.3986 33 1 1.4764 -0.6457 -2.0858 34 1 -0.2379 -4.2179 -0.6708 35 1 1.2068 -7.5281 -1.3445 36 1 1.0635 -8.0422 0.3563 37 1 2.7195 -6.2706 0.9990 38 1 3.4127 -7.4417 -0.1530 39 1 3.8379 -4.9636 -0.6894 40 1 3.1240 -5.9296 -2.0027 41 1 1.1218 -2.7476 1.0609 42 1 2.9048 -2.8136 1.0410 43 1 0.3221 -0.3307 2.2837 44 1 -0.8709 -0.2124 5.3966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995541649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:54 Heat of formation + Delta-G solvation = -45.316745 kcal Electronic energy + Delta-G solvation = -24973.800820 eV Core-core repulsion = 21505.942388 eV Total energy + Delta-G solvation = -3467.858432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60040 -39.45470 -37.84474 -34.15192 -34.04350 -33.12031 -31.60718 -30.81191 -27.53220 -27.00418 -26.62142 -25.54314 -24.19236 -23.76818 -21.58482 -20.22179 -18.79056 -18.37593 -17.27384 -17.10723 -16.79143 -16.11447 -15.41203 -15.27721 -14.52170 -14.25746 -14.12720 -14.04945 -13.62739 -13.43843 -13.20778 -12.97730 -12.83210 -12.69228 -12.41145 -12.12097 -12.02584 -11.54580 -11.41866 -11.23032 -11.04407 -11.01091 -10.93004 -10.71950 -10.57559 -10.49165 -10.20404 -9.88461 -9.70305 -9.60443 -9.00568 -8.40534 -8.23582 -7.08583 -5.86017 -3.15918 1.86093 2.80348 3.22634 3.38050 3.44126 3.46258 3.53978 4.50633 4.55041 4.61021 4.79713 4.81734 5.09992 5.11657 5.13467 5.21545 5.29572 5.34245 5.50402 5.51600 5.60420 5.70247 5.75296 5.81854 5.86277 5.96336 5.98334 6.03935 6.11350 6.14751 6.22007 6.26111 6.35160 6.38297 6.48824 6.63174 6.67950 6.76025 6.90909 7.25630 7.63473 7.86586 8.32326 8.42457 9.44710 9.99120 10.34248 11.36252 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.005630 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.522291 B = 4972.137721 C = 6507.428567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.586 3.414 7 O -0.557 6.557 8 C -0.287 4.287 9 C 0.114 3.886 10 O -0.312 6.312 11 C 0.056 3.944 12 C -0.157 4.157 13 C -0.056 4.056 14 C 0.079 3.921 15 C 0.180 3.820 16 H 0.064 0.936 17 N -0.711 5.711 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.389 0.611 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -8.003 -10.589 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.186 4.186 4 C -0.007 4.007 5 N -0.339 5.339 6 C 0.376 3.624 7 O -0.437 6.437 8 C -0.292 4.292 9 C 0.048 3.952 10 O -0.224 6.224 11 C -0.019 4.019 12 C -0.195 4.195 13 C -0.093 4.093 14 C -0.047 4.047 15 C 0.068 3.932 16 H 0.082 0.918 17 N -0.353 5.353 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.179 0.821 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.227 0.773 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.200 -8.089 -10.950 14.247 hybrid contribution 0.277 -0.171 0.941 0.996 sum 4.477 -8.260 -10.009 13.728 Atomic orbital electron populations 1.21639 0.93594 1.01711 1.01948 1.22016 0.96461 0.95354 0.94917 1.21645 1.00215 0.94654 1.02137 1.22341 1.00457 0.80401 0.97455 1.48660 1.71197 1.05912 1.08161 1.16422 0.76534 0.83819 0.85623 1.90790 1.51501 1.86608 1.14774 1.19932 0.96866 0.97749 1.14636 1.22426 0.96005 0.86516 0.90227 1.86283 1.48167 1.18200 1.69712 1.23460 0.87874 0.88530 1.02005 1.22199 0.97113 0.99086 1.01071 1.20058 0.95288 0.94426 0.99565 1.23261 1.01606 1.02420 0.77389 1.21211 0.95382 0.89781 0.86872 0.91776 1.42526 1.13166 1.79309 1.00345 1.19288 0.96738 1.37951 0.83668 0.91051 1.24734 0.95979 1.01844 0.97893 1.69662 1.06652 1.52443 1.28982 0.86143 0.78001 0.77494 0.84679 1.20521 1.21823 1.21821 0.90872 0.93297 0.92861 0.92843 0.93111 0.91344 0.91761 0.90989 0.82080 0.91229 0.87596 0.89998 0.89719 0.90541 0.90764 0.90930 0.92559 0.77335 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.95 37.16 0.30 -1.82 16 2 C -0.09 -1.35 0.87 -152.24 -0.13 -1.49 16 3 C -0.13 -1.83 8.68 37.16 0.32 -1.50 16 4 C 0.12 1.79 5.83 -2.41 -0.01 1.77 16 5 N -0.61 -9.94 3.31 -173.73 -0.57 -10.52 16 6 C 0.59 9.99 6.79 -14.90 -0.10 9.89 16 7 O -0.56 -11.09 17.38 5.15 0.09 -11.00 16 8 C -0.29 -4.20 4.58 -105.07 -0.48 -4.69 16 9 C 0.11 1.60 10.11 29.06 0.29 1.90 16 10 O -0.31 -4.12 10.48 -15.12 -0.16 -4.28 16 11 C 0.06 0.53 7.15 37.41 0.27 0.80 16 12 C -0.16 -1.52 6.23 -26.37 -0.16 -1.69 16 13 C -0.06 -0.67 5.89 -27.91 -0.16 -0.84 16 14 C 0.08 1.38 5.83 -3.07 -0.02 1.36 16 15 C 0.18 3.34 2.84 -66.10 -0.19 3.15 16 16 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 17 N -0.71 -16.36 5.08 -51.65 -0.26 -16.62 16 18 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -26.75 13.06 55.49 0.72 -26.03 16 22 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H 0.07 1.32 6.36 -51.92 -0.33 0.99 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 29 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 33 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 34 H 0.16 2.19 7.98 -52.49 -0.42 1.78 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.38 7.64 -51.92 -0.40 0.98 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.39 9.49 5.28 -40.82 -0.22 9.27 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -30.63 353.24 -7.43 -38.06 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.21 Total: 8.55 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.33 Total: 0.01 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.11 Total: -53.17 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.07 Total: -15.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.63 -7.43 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995541649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.259 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds