Wall clock time and date at job start Tue Mar 31 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.88947 * 2 1 4 4 C 1.55136 * 111.19157 * 236.06780 * 2 1 3 5 5 N 1.47418 * 104.72002 * 279.19217 * 4 2 1 6 6 C 1.34783 * 125.64843 * 155.81731 * 5 4 2 7 7 O 1.21743 * 119.99374 * 4.87629 * 6 5 4 8 8 C 1.41792 * 120.00353 * 184.87516 * 6 5 4 9 9 C 1.33460 * 118.78445 * 75.29019 * 8 6 5 10 10 O 1.34435 * 123.10187 * 180.37923 * 9 8 6 11 11 C 1.45363 * 117.42435 * 343.70675 * 10 9 8 12 12 C 1.53482 * 108.29865 * 47.45775 * 11 10 9 13 13 C 1.50417 * 118.78857 * 255.27290 * 8 6 5 14 14 C 1.47017 * 108.70598 * 335.54893 * 5 4 2 15 15 C 1.54321 * 107.27286 * 1.29293 * 14 5 4 16 16 H 1.09003 * 110.71847 * 263.83066 * 15 14 5 17 17 N 1.46495 * 110.72491 * 140.72985 * 15 14 5 18 18 C 1.36942 * 120.00021 * 86.45223 * 17 15 14 19 19 H 1.08003 * 119.99700 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00250 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00175 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47099 * 120.00329 * 22 20 18 25 25 H 1.48496 * 109.46955 * 240.00193 * 22 20 18 26 26 H 1.09009 * 109.46843 * 296.11516 * 1 2 3 27 27 H 1.08993 * 109.47014 * 56.11887 * 1 2 3 28 28 H 1.08997 * 109.46970 * 176.12525 * 1 2 3 29 29 H 1.09001 * 109.47491 * 183.88029 * 3 2 1 30 30 H 1.09000 * 109.47114 * 303.88245 * 3 2 1 31 31 H 1.08998 * 109.47285 * 63.88094 * 3 2 1 32 32 H 1.08999 * 110.49743 * 160.35069 * 4 2 1 33 33 H 1.09002 * 110.34077 * 37.95305 * 4 2 1 34 34 H 1.07999 * 118.45933 * 0.42167 * 9 8 6 35 35 H 1.09000 * 109.69910 * 287.74328 * 11 10 9 36 36 H 1.08999 * 109.70341 * 167.16940 * 11 10 9 37 37 H 1.09002 * 109.70579 * 56.96416 * 12 11 10 38 38 H 1.08998 * 109.70770 * 177.58904 * 12 11 10 39 39 H 1.08997 * 109.45187 * 42.32310 * 13 8 6 40 40 H 1.09001 * 109.43916 * 282.36974 * 13 8 6 41 41 H 1.09011 * 109.87994 * 120.70751 * 14 5 4 42 42 H 1.08998 * 109.88946 * 241.71409 * 14 5 4 43 43 H 0.97000 * 120.00261 * 266.45618 * 17 15 14 44 44 H 0.97006 * 119.99955 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2001 5 7 2.0138 -2.2161 -0.7725 6 6 1.9470 -3.2835 -1.5928 7 8 2.0365 -3.1318 -2.7975 8 6 1.7726 -4.5829 -1.0528 9 6 0.5668 -4.9349 -0.6020 10 8 0.3062 -6.1403 -0.0668 11 6 1.2700 -7.2018 -0.3064 12 6 2.6740 -6.6510 -0.0215 13 6 2.9532 -5.5139 -1.0096 14 6 2.0286 -2.2644 0.6968 15 6 2.0862 -0.8075 1.2025 16 1 3.1134 -0.5155 1.4211 17 7 1.2376 -0.6350 2.3842 18 6 1.7369 -0.9036 3.6308 19 1 2.7564 -1.2421 3.7427 20 6 0.9332 -0.7396 4.7505 21 7 -0.3091 -0.3266 4.6141 22 14 1.6145 -1.1052 6.4510 23 1 3.0262 -1.5506 6.3333 24 1 1.5510 0.1224 7.2841 25 1 0.8080 -2.1775 7.0873 26 1 -0.3633 0.4524 0.9228 27 1 -0.3633 0.5729 -0.8531 28 1 -0.3633 -1.0253 -0.0694 29 1 3.1630 1.4033 -0.0695 30 1 1.6698 1.9731 -0.8531 31 1 1.7824 1.9302 0.9227 32 1 3.1253 -0.5272 -1.3986 33 1 1.4764 -0.6457 -2.0858 34 1 -0.2379 -4.2179 -0.6708 35 1 1.2068 -7.5281 -1.3445 36 1 1.0635 -8.0422 0.3563 37 1 2.7195 -6.2706 0.9990 38 1 3.4127 -7.4417 -0.1530 39 1 3.8379 -4.9636 -0.6894 40 1 3.1240 -5.9296 -2.0027 41 1 1.1218 -2.7476 1.0609 42 1 2.9048 -2.8136 1.0410 43 1 0.3221 -0.3307 2.2837 44 1 -0.8709 -0.2124 5.3966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995541649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:53 Heat of formation + Delta-G solvation = -64.309539 kcal Electronic energy + Delta-G solvation = -24974.624409 eV Core-core repulsion = 21505.942388 eV Total energy + Delta-G solvation = -3468.682021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81758 -40.61874 -39.23103 -35.84616 -35.17417 -34.46953 -32.72486 -32.54427 -29.15593 -28.30573 -27.78141 -26.53660 -25.84154 -25.03692 -23.01023 -21.41434 -20.19639 -19.44500 -19.12992 -18.38508 -17.89931 -17.38603 -16.86012 -16.36516 -16.18952 -15.69978 -15.47362 -15.14632 -15.01334 -14.72319 -14.37149 -14.28299 -14.11057 -13.82644 -13.73665 -13.52021 -13.35265 -12.98659 -12.86963 -12.79140 -12.54524 -12.37917 -12.09285 -12.03297 -11.87370 -11.80488 -11.64300 -11.50704 -11.31114 -11.00816 -10.88036 -9.66725 -9.44728 -9.02154 -7.92349 -5.20873 0.73991 1.49410 1.49865 1.51155 1.59825 2.10007 2.40380 2.58723 3.38287 3.42345 3.69520 3.73978 3.80836 3.83816 3.95667 4.11609 4.20612 4.24336 4.30142 4.32434 4.41591 4.45729 4.53803 4.66770 4.71862 4.79593 4.84688 4.86510 4.90535 5.02902 5.07880 5.08378 5.15287 5.19825 5.20098 5.23398 5.34166 5.43554 5.52305 5.57086 6.24840 6.29566 6.50163 7.07129 7.37953 8.10440 8.35147 9.30926 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.005630 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.522291 B = 4972.137721 C = 6507.428567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.588 3.412 7 O -0.587 6.587 8 C -0.305 4.305 9 C 0.119 3.881 10 O -0.326 6.326 11 C 0.048 3.952 12 C -0.150 4.150 13 C -0.056 4.056 14 C 0.096 3.904 15 C 0.173 3.827 16 H 0.066 0.934 17 N -0.720 5.720 18 C -0.238 4.238 19 H 0.077 0.923 20 C -0.068 4.068 21 N -0.966 5.966 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.297 1.297 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.381 0.619 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.638 -8.980 -11.247 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 C -0.182 4.182 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.379 3.621 7 O -0.470 6.470 8 C -0.309 4.309 9 C 0.053 3.947 10 O -0.238 6.238 11 C -0.025 4.025 12 C -0.187 4.187 13 C -0.094 4.094 14 C -0.030 4.030 15 C 0.062 3.938 16 H 0.084 0.916 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.095 0.905 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.224 1.224 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.101 0.899 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.217 0.783 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.639 -9.080 -11.631 15.796 hybrid contribution -0.146 0.104 1.064 1.079 sum 5.493 -8.976 -10.567 14.913 Atomic orbital electron populations 1.21574 0.93933 1.01100 1.01734 1.21963 0.96112 0.96198 0.93556 1.21612 1.01146 0.93289 1.02126 1.22414 1.01389 0.79567 0.97094 1.48660 1.70897 1.06529 1.07557 1.16750 0.75581 0.84562 0.85164 1.90769 1.53099 1.87105 1.15979 1.20034 0.98156 0.97295 1.15432 1.22383 0.95713 0.87074 0.89553 1.86263 1.49670 1.18376 1.69462 1.23824 0.87050 0.87989 1.03664 1.22187 0.98047 0.99005 0.99475 1.20128 0.93935 0.94698 1.00627 1.22874 1.00834 1.01250 0.78011 1.21385 0.94864 0.90952 0.86572 0.91619 1.42632 1.13285 1.79317 1.00913 1.19640 0.96726 1.35772 0.84792 0.90477 1.25439 0.96406 1.03061 1.01176 1.69805 1.07892 1.54675 1.29327 0.85194 0.77932 0.76674 0.80690 1.18995 1.22369 1.22448 0.93191 0.90876 0.94077 0.91487 0.90760 0.93352 0.90257 0.90583 0.82643 0.89873 0.85007 0.91264 0.86585 0.90985 0.90183 0.92753 0.92200 0.78324 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 7.95 71.98 0.57 -3.43 16 2 C -0.08 -2.33 0.87 -50.71 -0.04 -2.38 16 3 C -0.12 -3.29 8.68 71.98 0.62 -2.66 16 4 C 0.12 3.41 5.83 86.94 0.51 3.92 16 5 N -0.60 -19.32 3.31 -821.74 -2.72 -22.04 16 6 C 0.59 19.69 6.79 85.12 0.58 20.27 16 7 O -0.59 -23.03 17.38 -4.49 -0.08 -23.11 16 8 C -0.30 -8.71 4.58 -20.16 -0.09 -8.80 16 9 C 0.12 3.31 10.11 66.74 0.67 3.98 16 10 O -0.33 -8.25 10.48 -77.01 -0.81 -9.05 16 11 C 0.05 0.81 7.15 72.14 0.52 1.32 16 12 C -0.15 -2.55 6.23 30.83 0.19 -2.36 16 13 C -0.06 -1.27 5.89 29.83 0.18 -1.10 16 14 C 0.10 3.31 5.83 86.73 0.51 3.82 16 15 C 0.17 6.31 2.84 46.18 0.13 6.45 16 16 H 0.07 2.40 8.02 -2.39 -0.02 2.38 16 17 N -0.72 -33.37 5.08 -317.33 -1.61 -34.99 16 18 C -0.24 -12.30 9.98 84.03 0.84 -11.47 16 19 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 22 Si 0.97 44.44 29.55 68.60 2.03 46.46 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H 0.05 1.83 6.36 -2.38 -0.02 1.82 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.38 7.91 -2.39 -0.02 1.36 16 29 H 0.07 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 2.10 7.99 -2.39 -0.02 2.08 16 33 H 0.08 2.19 8.01 -2.39 -0.02 2.17 16 34 H 0.16 4.32 7.98 -2.91 -0.02 4.30 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 2.09 7.64 -2.38 -0.02 2.07 16 42 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 43 H 0.38 19.00 5.28 -92.71 -0.49 18.51 16 44 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -65.81 353.24 3.23 -62.58 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.49 Total: 32.33 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.65 Total: 4.30 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.05 Total: -113.51 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.89 Total: -32.16 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.81 3.23 -62.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995541649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.733 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds