Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.88659 * 2 1 4 4 C 1.55129 * 111.18975 * 236.06701 * 2 1 3 5 5 N 1.47425 * 104.72305 * 279.19001 * 4 2 1 6 6 C 1.34774 * 125.64872 * 155.81816 * 5 4 2 7 7 O 1.21611 * 120.00005 * 4.86055 * 6 5 4 8 8 C 1.47101 * 120.00051 * 184.85360 * 6 5 4 9 9 C 1.31915 * 118.92667 * 75.23664 * 8 6 5 10 10 C 1.50261 * 122.71085 * 180.47841 * 9 8 6 11 11 O 1.42897 * 109.99494 * 344.16463 * 10 9 8 12 12 C 1.43276 * 113.09582 * 50.59171 * 11 10 9 13 13 C 1.50414 * 118.87997 * 255.12847 * 8 6 5 14 14 C 1.47029 * 108.70279 * 335.55653 * 5 4 2 15 15 C 1.54323 * 107.27028 * 1.28722 * 14 5 4 16 16 H 1.09001 * 110.72075 * 263.65190 * 15 14 5 17 17 N 1.46500 * 110.72364 * 140.55593 * 15 14 5 18 18 C 1.36932 * 119.99778 * 86.44690 * 17 15 14 19 19 H 1.07999 * 120.00594 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00051 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00598 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99703 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46798 * 90.00394 * 22 20 18 24 24 H 1.48493 * 109.47129 * 209.99846 * 22 20 18 25 25 H 1.48494 * 109.47257 * 330.00452 * 22 20 18 26 26 H 1.09006 * 109.47256 * 296.12357 * 1 2 3 27 27 H 1.09002 * 109.47423 * 56.12156 * 1 2 3 28 28 H 1.09000 * 109.47368 * 176.12019 * 1 2 3 29 29 H 1.08996 * 109.46856 * 183.88161 * 3 2 1 30 30 H 1.09000 * 109.46940 * 303.88092 * 3 2 1 31 31 H 1.09000 * 109.47297 * 63.87738 * 3 2 1 32 32 H 1.09001 * 110.49542 * 160.35201 * 4 2 1 33 33 H 1.08998 * 110.34561 * 37.95532 * 4 2 1 34 34 H 1.08001 * 118.57297 * 0.37524 * 9 8 6 35 35 H 1.08999 * 109.36720 * 224.03588 * 10 9 8 36 36 H 1.09005 * 109.36506 * 104.29179 * 10 9 8 37 37 H 1.08998 * 109.63992 * 50.85534 * 12 11 10 38 38 H 1.08999 * 109.63546 * 171.26911 * 12 11 10 39 39 H 1.08991 * 109.45968 * 43.31117 * 13 8 6 40 40 H 1.09004 * 109.45361 * 283.37356 * 13 8 6 41 41 H 1.09001 * 109.88038 * 120.70113 * 14 5 4 42 42 H 1.08999 * 109.88163 * 241.71019 * 14 5 4 43 43 H 0.97001 * 119.99655 * 266.45800 * 17 15 14 44 44 H 0.96999 * 120.00423 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7725 6 6 1.9470 -3.2835 -1.5927 7 8 2.0360 -3.1321 -2.7961 8 6 1.7666 -4.6316 -1.0324 9 6 0.5764 -4.9824 -0.5846 10 6 0.2996 -6.3327 0.0137 11 8 1.3551 -7.2383 -0.3145 12 6 2.6562 -6.7144 -0.0221 13 6 2.9453 -5.5651 -0.9916 14 6 2.0285 -2.2644 0.6969 15 6 2.0860 -0.8075 1.2026 16 1 3.1129 -0.5165 1.4242 17 7 1.2342 -0.6339 2.3818 18 6 1.7295 -0.9028 3.6297 19 1 2.7483 -1.2424 3.7448 20 6 0.9223 -0.7389 4.7470 21 7 1.3984 -0.9968 5.9466 22 14 -0.8400 -0.1521 4.5480 23 1 -1.7360 -1.3245 4.3802 24 1 -1.2463 0.6126 5.7543 25 1 -0.9387 0.7216 3.3514 26 1 -0.3634 0.4525 0.9227 27 1 -0.3634 0.5729 -0.8532 28 1 -0.3634 -1.0253 -0.0695 29 1 3.1629 1.4033 -0.0696 30 1 1.6697 1.9731 -0.8532 31 1 1.7823 1.9303 0.9227 32 1 3.1252 -0.5272 -1.3986 33 1 1.4764 -0.6457 -2.0858 34 1 -0.2311 -4.2682 -0.6496 35 1 -0.6415 -6.7165 -0.3803 36 1 0.2267 -6.2399 1.0973 37 1 2.6802 -6.3439 1.0027 38 1 3.4031 -7.4987 -0.1457 39 1 3.8281 -5.0208 -0.6564 40 1 3.1243 -5.9676 -1.9887 41 1 1.1217 -2.7475 1.0610 42 1 2.9048 -2.8137 1.0411 43 1 0.3193 -0.3287 2.2784 44 1 0.8342 -0.8826 6.7273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995709803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -45.965994 kcal Electronic energy + Delta-G solvation = -24985.451310 eV Core-core repulsion = 21517.564725 eV Total energy + Delta-G solvation = -3467.886585 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45634 -39.22274 -37.93527 -34.34518 -33.95633 -33.01684 -31.26930 -31.20578 -28.07340 -27.29155 -27.14985 -25.31387 -24.02482 -23.77482 -21.57184 -20.22075 -19.09953 -18.08751 -17.71762 -17.14721 -16.53834 -16.14949 -15.73644 -15.19149 -14.72703 -14.58443 -14.38455 -14.03783 -13.71980 -13.44386 -13.29359 -12.87052 -12.76326 -12.72231 -12.56404 -12.37924 -12.22029 -11.75951 -11.61530 -11.48171 -11.42313 -11.10639 -11.01185 -10.71296 -10.65436 -10.38377 -10.22847 -10.03897 -9.67152 -9.50433 -9.16291 -9.06238 -8.45416 -7.46343 -5.90909 -3.28659 1.65862 2.66308 3.15337 3.25339 3.27983 3.35566 3.72530 4.41279 4.45380 4.61672 4.71199 4.80055 4.89580 4.94612 5.10252 5.12499 5.28739 5.31587 5.36927 5.38095 5.49968 5.53520 5.55090 5.57935 5.65108 5.75799 5.79460 5.83248 5.91959 6.05669 6.11270 6.14123 6.17236 6.28068 6.39625 6.41608 6.45206 6.50789 6.67976 6.93315 7.63836 7.84055 8.20491 8.27881 9.04722 9.76784 9.95279 11.26775 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.005674 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.658215 B = 4933.252917 C = 6220.715903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.606 5.606 6 C 0.567 3.433 7 O -0.548 6.548 8 C -0.136 4.136 9 C -0.152 4.152 10 C 0.090 3.910 11 O -0.379 6.379 12 C 0.060 3.940 13 C -0.106 4.106 14 C 0.077 3.923 15 C 0.187 3.813 16 H 0.075 0.925 17 N -0.736 5.736 18 C -0.253 4.253 19 H 0.092 0.908 20 C 0.012 3.988 21 N -0.928 5.928 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.366 0.634 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -4.864 -12.661 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.005 4.005 5 N -0.339 5.339 6 C 0.356 3.644 7 O -0.426 6.426 8 C -0.139 4.139 9 C -0.171 4.171 10 C 0.014 3.986 11 O -0.297 6.297 12 C -0.017 4.017 13 C -0.143 4.143 14 C -0.049 4.049 15 C 0.075 3.925 16 H 0.093 0.907 17 N -0.379 5.379 18 C -0.382 4.382 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.708 3.292 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.202 0.798 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.334 -5.068 -13.169 14.114 hybrid contribution -1.293 0.736 0.196 1.501 sum -0.959 -4.333 -12.973 13.711 Atomic orbital electron populations 1.21695 0.93983 1.01828 1.01782 1.22056 0.96188 0.95714 0.95134 1.21658 1.00631 0.94307 1.02174 1.22356 1.00819 0.79953 0.97352 1.48536 1.71330 1.05860 1.08162 1.18183 0.76377 0.84138 0.85750 1.90784 1.51130 1.86165 1.14572 1.20695 0.96801 0.94488 1.01941 1.23283 0.97047 0.99296 0.97518 1.21501 0.91244 0.86485 0.99353 1.88103 1.14683 1.41000 1.85937 1.22679 0.85194 0.96092 0.97748 1.20928 0.95832 0.95630 1.01943 1.23238 1.01996 1.02349 0.77281 1.21176 0.95590 0.89776 0.85978 0.90731 1.42854 1.12274 1.80645 1.02151 1.19064 0.98812 1.38600 0.81733 0.89020 1.24653 0.97651 1.01073 0.95115 1.69686 1.36121 1.54341 0.97321 0.86668 0.86562 0.78811 0.77117 1.20946 1.21524 1.20268 0.91683 0.92754 0.92654 0.92410 0.92922 0.91408 0.91298 0.90798 0.86167 0.87510 0.90694 0.92024 0.88076 0.89685 0.89321 0.90889 0.91886 0.79781 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.94 37.16 0.30 -1.66 16 2 C -0.09 -1.29 0.87 -152.24 -0.13 -1.42 16 3 C -0.13 -1.67 8.68 37.16 0.32 -1.35 16 4 C 0.12 1.66 5.83 -2.41 -0.01 1.65 16 5 N -0.61 -9.28 3.31 -171.77 -0.57 -9.85 16 6 C 0.57 9.22 7.08 -12.67 -0.09 9.13 16 7 O -0.55 -10.54 17.40 5.27 0.09 -10.44 16 8 C -0.14 -1.91 4.81 -103.07 -0.50 -2.41 16 9 C -0.15 -1.95 9.31 -36.43 -0.34 -2.29 16 10 C 0.09 1.00 7.05 35.79 0.25 1.26 16 11 O -0.38 -4.68 10.83 -35.23 -0.38 -5.06 16 12 C 0.06 0.63 6.88 37.22 0.26 0.89 16 13 C -0.11 -1.25 6.08 -27.96 -0.17 -1.42 16 14 C 0.08 1.24 5.87 -3.06 -0.02 1.22 16 15 C 0.19 3.21 2.84 -66.10 -0.19 3.02 16 16 H 0.07 1.32 8.02 -51.93 -0.42 0.91 16 17 N -0.74 -15.57 4.88 -51.65 -0.25 -15.82 16 18 C -0.25 -6.51 10.46 -15.06 -0.16 -6.67 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 21 N -0.93 -27.58 13.97 55.49 0.78 -26.81 16 22 Si 0.88 20.73 27.74 -169.99 -4.71 16.02 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 26 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 29 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 33 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 34 H 0.12 1.51 7.99 -52.49 -0.42 1.09 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.25 7.72 -51.93 -0.40 0.85 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.37 7.69 3.12 -40.82 -0.13 7.56 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -31.15 350.98 -7.51 -38.66 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.17 Total: 7.82 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.58 Total: 0.18 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.05 Total: -52.47 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.29 Total: -15.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.15 -7.51 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995709803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.306 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds