Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.88659 * 2 1 4 4 C 1.55129 * 111.18975 * 236.06701 * 2 1 3 5 5 N 1.47425 * 104.72305 * 279.19001 * 4 2 1 6 6 C 1.34774 * 125.64872 * 155.81816 * 5 4 2 7 7 O 1.21611 * 120.00005 * 4.86055 * 6 5 4 8 8 C 1.47101 * 120.00051 * 184.85360 * 6 5 4 9 9 C 1.31915 * 118.92667 * 75.23664 * 8 6 5 10 10 C 1.50261 * 122.71085 * 180.47841 * 9 8 6 11 11 O 1.42897 * 109.99494 * 344.16463 * 10 9 8 12 12 C 1.43276 * 113.09582 * 50.59171 * 11 10 9 13 13 C 1.50414 * 118.87997 * 255.12847 * 8 6 5 14 14 C 1.47029 * 108.70279 * 335.55653 * 5 4 2 15 15 C 1.54323 * 107.27028 * 1.28722 * 14 5 4 16 16 H 1.09001 * 110.72075 * 263.65190 * 15 14 5 17 17 N 1.46500 * 110.72364 * 140.55593 * 15 14 5 18 18 C 1.36932 * 119.99778 * 86.44690 * 17 15 14 19 19 H 1.07999 * 120.00594 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00051 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00598 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99703 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46798 * 90.00394 * 22 20 18 24 24 H 1.48493 * 109.47129 * 209.99846 * 22 20 18 25 25 H 1.48494 * 109.47257 * 330.00452 * 22 20 18 26 26 H 1.09006 * 109.47256 * 296.12357 * 1 2 3 27 27 H 1.09002 * 109.47423 * 56.12156 * 1 2 3 28 28 H 1.09000 * 109.47368 * 176.12019 * 1 2 3 29 29 H 1.08996 * 109.46856 * 183.88161 * 3 2 1 30 30 H 1.09000 * 109.46940 * 303.88092 * 3 2 1 31 31 H 1.09000 * 109.47297 * 63.87738 * 3 2 1 32 32 H 1.09001 * 110.49542 * 160.35201 * 4 2 1 33 33 H 1.08998 * 110.34561 * 37.95532 * 4 2 1 34 34 H 1.08001 * 118.57297 * 0.37524 * 9 8 6 35 35 H 1.08999 * 109.36720 * 224.03588 * 10 9 8 36 36 H 1.09005 * 109.36506 * 104.29179 * 10 9 8 37 37 H 1.08998 * 109.63992 * 50.85534 * 12 11 10 38 38 H 1.08999 * 109.63546 * 171.26911 * 12 11 10 39 39 H 1.08991 * 109.45968 * 43.31117 * 13 8 6 40 40 H 1.09004 * 109.45361 * 283.37356 * 13 8 6 41 41 H 1.09001 * 109.88038 * 120.70113 * 14 5 4 42 42 H 1.08999 * 109.88163 * 241.71019 * 14 5 4 43 43 H 0.97001 * 119.99655 * 266.45800 * 17 15 14 44 44 H 0.96999 * 120.00423 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7725 6 6 1.9470 -3.2835 -1.5927 7 8 2.0360 -3.1321 -2.7961 8 6 1.7666 -4.6316 -1.0324 9 6 0.5764 -4.9824 -0.5846 10 6 0.2996 -6.3327 0.0137 11 8 1.3551 -7.2383 -0.3145 12 6 2.6562 -6.7144 -0.0221 13 6 2.9453 -5.5651 -0.9916 14 6 2.0285 -2.2644 0.6969 15 6 2.0860 -0.8075 1.2026 16 1 3.1129 -0.5165 1.4242 17 7 1.2342 -0.6339 2.3818 18 6 1.7295 -0.9028 3.6297 19 1 2.7483 -1.2424 3.7448 20 6 0.9223 -0.7389 4.7470 21 7 1.3984 -0.9968 5.9466 22 14 -0.8400 -0.1521 4.5480 23 1 -1.7360 -1.3245 4.3802 24 1 -1.2463 0.6126 5.7543 25 1 -0.9387 0.7216 3.3514 26 1 -0.3634 0.4525 0.9227 27 1 -0.3634 0.5729 -0.8532 28 1 -0.3634 -1.0253 -0.0695 29 1 3.1629 1.4033 -0.0696 30 1 1.6697 1.9731 -0.8532 31 1 1.7823 1.9303 0.9227 32 1 3.1252 -0.5272 -1.3986 33 1 1.4764 -0.6457 -2.0858 34 1 -0.2311 -4.2682 -0.6496 35 1 -0.6415 -6.7165 -0.3803 36 1 0.2267 -6.2399 1.0973 37 1 2.6802 -6.3439 1.0027 38 1 3.4031 -7.4987 -0.1457 39 1 3.8281 -5.0208 -0.6564 40 1 3.1243 -5.9676 -1.9887 41 1 1.1217 -2.7475 1.0610 42 1 2.9048 -2.8137 1.0411 43 1 0.3193 -0.3287 2.2784 44 1 0.8342 -0.8826 6.7273 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995709803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -66.197774 kcal Electronic energy + Delta-G solvation = -24986.328626 eV Core-core repulsion = 21517.564725 eV Total energy + Delta-G solvation = -3468.763901 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67980 -40.26623 -39.20497 -36.00206 -35.15341 -34.26263 -33.06811 -32.16586 -29.58772 -28.46039 -28.22779 -26.36313 -25.56171 -24.90987 -23.01770 -21.41417 -20.56258 -19.47270 -19.14317 -18.28572 -17.55164 -17.39328 -17.01751 -16.43723 -16.16715 -15.81120 -15.66407 -15.24508 -15.17314 -14.72874 -14.47285 -14.35516 -13.94691 -13.79735 -13.74743 -13.55804 -13.43797 -13.21331 -12.98582 -12.84135 -12.63672 -12.54719 -12.20678 -12.08619 -11.94585 -11.90422 -11.65801 -11.39606 -11.26273 -10.98442 -10.55335 -10.15124 -9.74887 -9.36398 -8.01099 -5.35688 0.60950 1.37664 1.39609 1.41004 1.47291 1.93949 2.48098 2.85790 3.22177 3.28408 3.53863 3.58405 3.68728 3.71324 3.89081 4.00082 4.18510 4.20881 4.23310 4.31127 4.37731 4.41018 4.47520 4.58184 4.65866 4.72599 4.73662 4.78584 4.83559 4.90934 4.94979 5.01175 5.06195 5.13725 5.16094 5.22250 5.33001 5.44512 5.46532 5.78999 6.06318 6.22187 6.36028 6.93321 7.07916 7.81828 8.00983 9.19782 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.005674 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.658215 B = 4933.252917 C = 6220.715903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 C -0.128 4.128 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.568 3.432 7 O -0.581 6.581 8 C -0.160 4.160 9 C -0.145 4.145 10 C 0.089 3.911 11 O -0.392 6.392 12 C 0.060 3.940 13 C -0.104 4.104 14 C 0.091 3.909 15 C 0.178 3.822 16 H 0.069 0.931 17 N -0.736 5.736 18 C -0.228 4.228 19 H 0.063 0.937 20 C -0.054 4.054 21 N -0.979 5.979 22 Si 0.939 3.061 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.250 1.250 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.370 0.630 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -4.677 -14.298 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.080 4.080 3 C -0.185 4.185 4 C -0.005 4.005 5 N -0.334 5.334 6 C 0.357 3.643 7 O -0.462 6.462 8 C -0.162 4.162 9 C -0.164 4.164 10 C 0.013 3.987 11 O -0.311 6.311 12 C -0.016 4.016 13 C -0.141 4.141 14 C -0.035 4.035 15 C 0.068 3.932 16 H 0.087 0.913 17 N -0.380 5.380 18 C -0.359 4.359 19 H 0.081 0.919 20 C -0.246 4.246 21 N -0.629 5.629 22 Si 0.767 3.233 23 H -0.205 1.205 24 H -0.226 1.226 25 H -0.175 1.175 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.207 0.793 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.542 -4.869 -14.864 15.650 hybrid contribution -0.940 0.666 0.645 1.320 sum -1.482 -4.203 -14.219 14.901 Atomic orbital electron populations 1.21699 0.93655 1.01704 1.02182 1.22010 0.96397 0.96326 0.93301 1.21654 1.01314 0.93079 1.02468 1.22458 1.01680 0.79088 0.97227 1.48526 1.70840 1.06459 1.07586 1.18528 0.75495 0.84945 0.85298 1.90761 1.52800 1.86721 1.15890 1.20808 0.98146 0.93942 1.03350 1.23512 0.96534 1.00132 0.96246 1.21667 0.91867 0.85453 0.99743 1.88090 1.15394 1.41490 1.86087 1.22802 0.85182 0.96367 0.97272 1.20960 0.95210 0.95675 1.02272 1.22904 1.01548 1.01216 0.77824 1.21343 0.94931 0.91085 0.85858 0.91288 1.42778 1.12852 1.80656 1.01689 1.19013 0.97393 1.35976 0.83524 0.91895 1.25359 1.01929 1.02540 0.94799 1.69857 1.37761 1.57092 0.98237 0.85664 0.81473 0.78652 0.77513 1.20521 1.22609 1.17468 0.92942 0.90291 0.93392 0.91568 0.90479 0.92902 0.90117 0.90264 0.86168 0.85399 0.89934 0.92038 0.85762 0.89251 0.89490 0.91772 0.91941 0.79348 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 7.94 71.98 0.57 -2.95 16 2 C -0.08 -2.09 0.87 -50.71 -0.04 -2.13 16 3 C -0.13 -2.93 8.68 71.98 0.62 -2.30 16 4 C 0.12 3.05 5.83 86.93 0.51 3.56 16 5 N -0.60 -17.60 3.31 -815.61 -2.70 -20.30 16 6 C 0.57 17.87 7.08 86.57 0.61 18.49 16 7 O -0.58 -21.85 17.40 -4.06 -0.07 -21.92 16 8 C -0.16 -4.31 4.81 -18.48 -0.09 -4.40 16 9 C -0.15 -3.52 9.31 24.70 0.23 -3.29 16 10 C 0.09 1.80 7.05 71.10 0.50 2.30 16 11 O -0.39 -8.96 10.83 -148.98 -1.61 -10.58 16 12 C 0.06 1.18 6.88 72.02 0.50 1.68 16 13 C -0.10 -2.34 6.08 29.80 0.18 -2.15 16 14 C 0.09 2.83 5.87 86.73 0.51 3.34 16 15 C 0.18 5.92 2.84 46.18 0.13 6.05 16 16 H 0.07 2.40 8.02 -2.39 -0.02 2.38 16 17 N -0.74 -30.39 4.88 -317.33 -1.55 -31.93 16 18 C -0.23 -11.83 10.46 84.03 0.88 -10.95 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 20 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 21 N -0.98 -59.62 13.97 21.65 0.30 -59.32 16 22 Si 0.94 42.51 27.74 68.60 1.90 44.41 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 26 H 0.05 1.51 6.34 -2.38 -0.02 1.50 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.31 7.91 -2.39 -0.02 1.29 16 29 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 33 H 0.08 2.03 8.01 -2.39 -0.02 2.01 16 34 H 0.12 2.87 7.99 -2.91 -0.02 2.84 16 35 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.06 2.14 7.72 -2.39 -0.02 2.12 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.37 14.84 3.12 -92.71 -0.29 14.55 16 44 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.21 350.98 2.48 -64.72 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.63 Total: 30.20 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.58 Total: 4.71 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -3.95 Total: -111.55 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.68 Total: -32.50 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.90 Total: 44.41 kcal Total: -67.21 2.48 -64.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995709803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.474 kcal (2) G-P(sol) polarization free energy of solvation -67.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds