Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.38913 * 2 1 4 4 C 1.54385 * 110.34550 * 237.76840 * 2 1 3 5 5 N 1.48148 * 104.61648 * 264.99574 * 4 2 1 6 6 C 1.34781 * 127.83597 * 140.41647 * 5 4 2 7 7 O 1.21277 * 120.00294 * 355.00218 * 6 5 4 8 8 C 1.50701 * 120.00107 * 175.00615 * 6 5 4 9 9 C 1.52998 * 119.80949 * 138.23910 * 8 6 5 10 10 C 1.54513 * 122.36560 * 65.85587 * 8 6 5 11 11 H 1.08996 * 122.36466 * 359.45551 * 10 8 6 12 12 C 1.54481 * 104.06355 * 223.22141 * 10 8 6 13 13 O 1.44419 * 104.80233 * 336.02456 * 12 10 8 14 14 C 1.44427 * 105.27929 * 40.51349 * 13 12 10 15 15 C 1.48142 * 104.32689 * 320.41256 * 5 4 2 16 16 C 1.54286 * 110.33936 * 122.22943 * 2 1 3 17 17 H 1.09003 * 110.34158 * 237.84399 * 16 2 1 18 18 N 1.46499 * 110.34312 * 0.02562 * 16 2 1 19 19 C 1.36941 * 119.99624 * 204.72320 * 18 16 2 20 20 H 1.08001 * 119.99874 * 0.27540 * 19 18 16 21 21 C 1.38811 * 119.99389 * 180.27911 * 19 18 16 22 22 N 1.31624 * 119.99634 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00445 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46869 * 90.00379 * 23 21 19 25 25 H 1.48502 * 109.47132 * 210.00370 * 23 21 19 26 26 H 1.48492 * 109.47044 * 330.00266 * 23 21 19 27 27 H 1.08994 * 109.47721 * 297.76689 * 1 2 3 28 28 H 1.09002 * 109.46736 * 57.77109 * 1 2 3 29 29 H 1.09004 * 109.46735 * 177.76306 * 1 2 3 30 30 H 1.08993 * 109.47477 * 182.22831 * 3 2 1 31 31 H 1.09002 * 109.47093 * 302.22952 * 3 2 1 32 32 H 1.09001 * 109.46920 * 62.22523 * 3 2 1 33 33 H 1.09001 * 110.40991 * 23.77860 * 4 2 1 34 34 H 1.09003 * 110.40843 * 146.21161 * 4 2 1 35 35 H 1.08994 * 117.43318 * 355.36190 * 9 8 6 36 36 H 1.08995 * 117.43102 * 140.01862 * 9 8 6 37 37 H 1.08997 * 110.37026 * 217.19521 * 12 10 8 38 38 H 1.09001 * 110.46322 * 94.90106 * 12 10 8 39 39 H 1.08997 * 110.37373 * 200.65859 * 14 13 12 40 40 H 1.08998 * 110.46489 * 78.36519 * 14 13 12 41 41 H 1.09002 * 110.40708 * 280.80500 * 15 5 4 42 42 H 1.09002 * 110.40758 * 158.36406 * 15 5 4 43 43 H 0.97000 * 120.00313 * 25.00663 * 18 16 2 44 44 H 0.96996 * 120.00355 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0668 -0.7720 -1.2245 5 7 2.3140 -2.1438 -0.7225 6 6 2.0775 -3.3105 -1.3545 7 8 1.5231 -3.3145 -2.4332 8 6 2.5018 -4.6103 -0.7208 9 6 1.5698 -5.8224 -0.7741 10 6 1.8729 -5.1360 0.5890 11 1 1.0972 -4.5887 1.1245 12 6 3.0803 -5.6453 1.4071 13 8 4.0957 -5.9385 0.4229 14 6 4.0148 -4.8641 -0.5390 15 6 2.8802 -1.9422 0.6315 16 6 2.0663 -0.7715 1.2238 17 1 2.7080 -0.1282 1.8258 18 7 0.9553 -1.2813 2.0313 19 6 1.1382 -1.5356 3.3644 20 1 2.1001 -1.3560 3.8214 21 6 0.0871 -2.0241 4.1282 22 7 0.2627 -2.2680 5.4097 23 14 -1.5768 -2.3341 3.3379 24 1 -1.6294 -3.7266 2.8248 25 1 -2.6485 -2.1375 4.3469 26 1 -1.7754 -1.3845 2.2136 27 1 -0.3634 0.4787 0.9092 28 1 -0.3633 0.5481 -0.8694 29 1 -0.3633 -1.0269 -0.0401 30 1 3.1521 1.4170 -0.0400 31 1 1.6759 1.9656 -0.8693 32 1 1.7407 1.9415 0.9093 33 1 1.3224 -0.7870 -2.0206 34 1 2.9950 -0.3241 -1.5792 35 1 0.5818 -5.6773 -1.2108 36 1 2.0234 -6.7971 -0.9538 37 1 2.8127 -6.5479 1.9566 38 1 3.4286 -4.8733 2.0933 39 1 4.4650 -5.1665 -1.4844 40 1 4.5060 -3.9704 -0.1542 41 1 3.9355 -1.6770 0.5666 42 1 2.7494 -2.8400 1.2357 43 1 0.0914 -1.4427 1.6208 44 1 -0.4718 -2.6091 5.9436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995830455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -16.667032 kcal Electronic energy + Delta-G solvation = -25849.806345 eV Core-core repulsion = 22383.190259 eV Total energy + Delta-G solvation = -3466.616087 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86080 -39.45741 -37.81026 -34.28416 -34.16831 -33.24302 -31.17248 -28.97471 -28.24044 -26.99525 -26.67390 -25.59196 -23.85702 -22.46000 -21.16276 -20.73126 -19.12549 -18.54017 -17.68224 -16.96727 -16.19317 -15.84146 -15.70791 -15.09250 -14.77153 -14.45676 -14.39976 -13.83473 -13.63551 -13.33116 -12.99298 -12.80370 -12.66119 -12.53388 -12.26480 -12.09996 -11.90692 -11.74542 -11.43836 -11.39662 -11.32951 -11.04665 -10.67685 -10.57809 -10.42142 -10.35277 -10.12779 -10.05429 -9.79856 -9.64852 -9.42264 -9.15596 -8.49566 -7.37972 -5.89853 -3.26035 2.62211 3.00671 3.26381 3.30562 3.36925 3.54821 3.84974 4.46788 4.49320 4.59923 4.62381 4.79957 4.88437 4.93595 4.95769 5.21802 5.31544 5.40358 5.41806 5.52509 5.58511 5.62533 5.67696 5.68381 5.74100 5.75345 5.83720 5.85454 5.87185 6.01114 6.05696 6.09172 6.13686 6.16925 6.26638 6.35150 6.46232 6.56640 6.67733 6.73000 7.75026 7.86241 8.29010 8.32302 9.07187 9.79854 9.99516 11.27872 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.007982 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.905997 B = 3506.856196 C = 4761.248168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.132 4.132 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.581 3.419 7 O -0.547 6.547 8 C -0.204 4.204 9 C -0.102 4.102 10 C -0.172 4.172 11 H 0.136 0.864 12 C 0.071 3.929 13 O -0.371 6.371 14 C 0.092 3.908 15 C 0.069 3.931 16 C 0.180 3.820 17 H 0.078 0.922 18 N -0.740 5.740 19 C -0.249 4.249 20 H 0.092 0.908 21 C 0.012 3.988 22 N -0.928 5.928 23 Si 0.873 3.127 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.366 0.634 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -0.019 -11.454 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.009 4.009 5 N -0.342 5.342 6 C 0.369 3.631 7 O -0.425 6.425 8 C -0.207 4.207 9 C -0.140 4.140 10 C -0.190 4.190 11 H 0.154 0.846 12 C -0.005 4.005 13 O -0.289 6.289 14 C 0.015 3.985 15 C -0.057 4.057 16 C 0.068 3.932 17 H 0.096 0.904 18 N -0.384 5.384 19 C -0.379 4.379 20 H 0.110 0.890 21 C -0.184 4.184 22 N -0.575 5.575 23 Si 0.703 3.297 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.202 1.202 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.202 0.798 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.924 -0.313 -11.802 13.209 hybrid contribution -1.443 -0.001 -0.342 1.483 sum 4.481 -0.313 -12.144 12.948 Atomic orbital electron populations 1.21744 0.93964 1.01509 1.01746 1.21806 0.96558 0.95547 0.95283 1.21784 1.00491 0.94576 1.02073 1.22455 1.00447 0.81205 0.96769 1.48858 1.62289 1.04858 1.18177 1.18644 0.78034 0.82412 0.83995 1.90662 1.43139 1.86799 1.21935 1.23080 0.96374 0.95540 1.05715 1.23255 0.99200 0.94930 0.96575 1.24784 1.01433 1.03996 0.88800 0.84588 1.23039 0.84768 1.01898 0.90841 1.89140 1.56560 1.45596 1.37610 1.22712 0.90999 0.91336 0.93445 1.23627 0.96860 1.02994 0.82206 1.21155 0.90105 0.91748 0.90153 0.90422 1.43061 1.09202 1.78744 1.07415 1.19065 0.98747 1.36788 0.83302 0.89047 1.24618 0.97326 1.01108 0.95364 1.69683 1.31908 1.50583 1.05325 0.86753 0.85902 0.78333 0.78689 1.21008 1.21595 1.20238 0.91235 0.93264 0.92971 0.92507 0.92849 0.91756 0.90361 0.91213 0.87398 0.87662 0.88175 0.90081 0.88655 0.91028 0.92042 0.89054 0.79766 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.10 37.16 0.26 -1.81 16 2 C -0.09 -1.29 1.03 -153.11 -0.16 -1.45 16 3 C -0.13 -1.53 8.26 37.16 0.31 -1.23 16 4 C 0.11 1.59 6.16 -2.41 -0.01 1.58 16 5 N -0.61 -9.51 3.32 -169.30 -0.56 -10.07 16 6 C 0.58 9.88 7.49 -10.98 -0.08 9.80 16 7 O -0.55 -10.85 17.27 5.56 0.10 -10.76 16 8 C -0.20 -3.03 2.04 -154.09 -0.31 -3.34 16 9 C -0.10 -1.43 9.77 -25.34 -0.25 -1.68 16 10 C -0.17 -2.56 5.99 -87.66 -0.53 -3.09 16 11 H 0.14 2.34 8.14 -51.93 -0.42 1.92 16 12 C 0.07 0.98 7.42 37.93 0.28 1.26 16 13 O -0.37 -5.24 11.32 -35.23 -0.40 -5.64 16 14 C 0.09 1.21 7.19 37.94 0.27 1.49 16 15 C 0.07 1.05 5.77 -2.41 -0.01 1.04 16 16 C 0.18 3.03 3.35 -66.53 -0.22 2.80 16 17 H 0.08 1.31 7.66 -51.93 -0.40 0.91 16 18 N -0.74 -15.61 4.37 -52.06 -0.23 -15.84 16 19 C -0.25 -6.32 10.44 -15.06 -0.16 -6.47 16 20 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 21 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 22 N -0.93 -27.37 13.97 55.49 0.78 -26.59 16 23 Si 0.87 21.02 27.74 -169.99 -4.71 16.31 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 27 H 0.07 1.19 7.76 -51.93 -0.40 0.78 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.92 6.97 -51.93 -0.36 0.56 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.16 7.57 -51.93 -0.39 0.77 16 34 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 35 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.11 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.15 7.83 -51.93 -0.41 0.75 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 0.90 7.35 -51.93 -0.38 0.52 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.55 5.86 -51.93 -0.30 1.24 16 43 H 0.37 7.93 2.98 -40.82 -0.12 7.81 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -30.23 345.71 -7.52 -37.74 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.99 Total: 10.49 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.71 Total: -0.86 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.01 Total: -52.50 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.30 Total: -16.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.23 -7.52 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995830455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.075 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds