Wall clock time and date at job start Tue Mar 31 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.38913 * 2 1 4 4 C 1.54385 * 110.34550 * 237.76840 * 2 1 3 5 5 N 1.48148 * 104.61648 * 264.99574 * 4 2 1 6 6 C 1.34781 * 127.83597 * 140.41647 * 5 4 2 7 7 O 1.21277 * 120.00294 * 355.00218 * 6 5 4 8 8 C 1.50701 * 120.00107 * 175.00615 * 6 5 4 9 9 C 1.52998 * 119.80949 * 138.23910 * 8 6 5 10 10 C 1.54513 * 122.36560 * 65.85587 * 8 6 5 11 11 H 1.08996 * 122.36466 * 359.45551 * 10 8 6 12 12 C 1.54481 * 104.06355 * 223.22141 * 10 8 6 13 13 O 1.44419 * 104.80233 * 336.02456 * 12 10 8 14 14 C 1.44427 * 105.27929 * 40.51349 * 13 12 10 15 15 C 1.48142 * 104.32689 * 320.41256 * 5 4 2 16 16 C 1.54286 * 110.33936 * 122.22943 * 2 1 3 17 17 H 1.09003 * 110.34158 * 237.84399 * 16 2 1 18 18 N 1.46499 * 110.34312 * 0.02562 * 16 2 1 19 19 C 1.36941 * 119.99624 * 204.72320 * 18 16 2 20 20 H 1.08001 * 119.99874 * 0.27540 * 19 18 16 21 21 C 1.38811 * 119.99389 * 180.27911 * 19 18 16 22 22 N 1.31624 * 119.99634 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00445 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46869 * 90.00379 * 23 21 19 25 25 H 1.48502 * 109.47132 * 210.00370 * 23 21 19 26 26 H 1.48492 * 109.47044 * 330.00266 * 23 21 19 27 27 H 1.08994 * 109.47721 * 297.76689 * 1 2 3 28 28 H 1.09002 * 109.46736 * 57.77109 * 1 2 3 29 29 H 1.09004 * 109.46735 * 177.76306 * 1 2 3 30 30 H 1.08993 * 109.47477 * 182.22831 * 3 2 1 31 31 H 1.09002 * 109.47093 * 302.22952 * 3 2 1 32 32 H 1.09001 * 109.46920 * 62.22523 * 3 2 1 33 33 H 1.09001 * 110.40991 * 23.77860 * 4 2 1 34 34 H 1.09003 * 110.40843 * 146.21161 * 4 2 1 35 35 H 1.08994 * 117.43318 * 355.36190 * 9 8 6 36 36 H 1.08995 * 117.43102 * 140.01862 * 9 8 6 37 37 H 1.08997 * 110.37026 * 217.19521 * 12 10 8 38 38 H 1.09001 * 110.46322 * 94.90106 * 12 10 8 39 39 H 1.08997 * 110.37373 * 200.65859 * 14 13 12 40 40 H 1.08998 * 110.46489 * 78.36519 * 14 13 12 41 41 H 1.09002 * 110.40708 * 280.80500 * 15 5 4 42 42 H 1.09002 * 110.40758 * 158.36406 * 15 5 4 43 43 H 0.97000 * 120.00313 * 25.00663 * 18 16 2 44 44 H 0.96996 * 120.00355 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0668 -0.7720 -1.2245 5 7 2.3140 -2.1438 -0.7225 6 6 2.0775 -3.3105 -1.3545 7 8 1.5231 -3.3145 -2.4332 8 6 2.5018 -4.6103 -0.7208 9 6 1.5698 -5.8224 -0.7741 10 6 1.8729 -5.1360 0.5890 11 1 1.0972 -4.5887 1.1245 12 6 3.0803 -5.6453 1.4071 13 8 4.0957 -5.9385 0.4229 14 6 4.0148 -4.8641 -0.5390 15 6 2.8802 -1.9422 0.6315 16 6 2.0663 -0.7715 1.2238 17 1 2.7080 -0.1282 1.8258 18 7 0.9553 -1.2813 2.0313 19 6 1.1382 -1.5356 3.3644 20 1 2.1001 -1.3560 3.8214 21 6 0.0871 -2.0241 4.1282 22 7 0.2627 -2.2680 5.4097 23 14 -1.5768 -2.3341 3.3379 24 1 -1.6294 -3.7266 2.8248 25 1 -2.6485 -2.1375 4.3469 26 1 -1.7754 -1.3845 2.2136 27 1 -0.3634 0.4787 0.9092 28 1 -0.3633 0.5481 -0.8694 29 1 -0.3633 -1.0269 -0.0401 30 1 3.1521 1.4170 -0.0400 31 1 1.6759 1.9656 -0.8693 32 1 1.7407 1.9415 0.9093 33 1 1.3224 -0.7870 -2.0206 34 1 2.9950 -0.3241 -1.5792 35 1 0.5818 -5.6773 -1.2108 36 1 2.0234 -6.7971 -0.9538 37 1 2.8127 -6.5479 1.9566 38 1 3.4286 -4.8733 2.0933 39 1 4.4650 -5.1665 -1.4844 40 1 4.5060 -3.9704 -0.1542 41 1 3.9355 -1.6770 0.5666 42 1 2.7494 -2.8400 1.2357 43 1 0.0914 -1.4427 1.6208 44 1 -0.4718 -2.6091 5.9436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995830455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:37 Heat of formation + Delta-G solvation = -36.140801 kcal Electronic energy + Delta-G solvation = -25850.650791 eV Core-core repulsion = 22383.190259 eV Total energy + Delta-G solvation = -3467.460533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06252 -40.68254 -39.15771 -35.87841 -35.44536 -34.57282 -33.03506 -30.11775 -29.63562 -28.23639 -27.81577 -26.69902 -25.52254 -23.82429 -22.54359 -21.88192 -20.55587 -19.81739 -19.37559 -18.21439 -17.48469 -17.09567 -16.93241 -16.46244 -16.23923 -15.97150 -15.64475 -15.14229 -15.00912 -14.85214 -14.23481 -14.16152 -13.95232 -13.83181 -13.48354 -13.41590 -13.12105 -13.08338 -12.99751 -12.74770 -12.58547 -12.54328 -12.21202 -11.95787 -11.93426 -11.61547 -11.56072 -11.42487 -11.21591 -11.07078 -10.96225 -10.61635 -9.87326 -9.20789 -8.01070 -5.31862 1.31647 1.33292 1.34036 1.39863 1.78833 2.37843 2.45062 2.75181 3.27903 3.30802 3.43745 3.49851 3.53614 3.64131 3.74787 3.77877 4.04517 4.06801 4.27720 4.35098 4.39731 4.52025 4.55646 4.56645 4.62107 4.65962 4.70507 4.73971 4.75929 4.79686 4.88611 4.93613 4.96762 4.98932 5.07501 5.25476 5.29404 5.32255 5.51775 5.58038 5.81894 6.23649 6.46447 7.01593 7.09236 7.86260 8.03682 9.20017 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.007982 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.905997 B = 3506.856196 C = 4761.248168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.126 4.126 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.576 3.424 7 O -0.580 6.580 8 C -0.207 4.207 9 C -0.094 4.094 10 C -0.178 4.178 11 H 0.108 0.892 12 C 0.076 3.924 13 O -0.374 6.374 14 C 0.096 3.904 15 C 0.076 3.924 16 C 0.169 3.831 17 H 0.082 0.918 18 N -0.744 5.744 19 C -0.214 4.214 20 H 0.071 0.929 21 C -0.049 4.049 22 N -0.976 5.976 23 Si 0.925 3.075 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.261 1.261 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.364 0.636 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 0.671 -13.557 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.365 3.635 7 O -0.461 6.461 8 C -0.210 4.210 9 C -0.132 4.132 10 C -0.197 4.197 11 H 0.126 0.874 12 C 0.000 4.000 13 O -0.292 6.292 14 C 0.019 3.981 15 C -0.049 4.049 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.388 5.388 19 C -0.346 4.346 20 H 0.089 0.911 21 C -0.241 4.241 22 N -0.627 5.627 23 Si 0.755 3.245 24 H -0.211 1.211 25 H -0.227 1.227 26 H -0.186 1.186 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.200 0.800 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.202 0.415 -13.954 15.708 hybrid contribution -1.762 -0.141 0.265 1.788 sum 5.440 0.274 -13.689 14.732 Atomic orbital electron populations 1.21724 0.95151 0.99986 1.02018 1.21769 0.95564 0.97108 0.93926 1.21759 1.01759 0.92303 1.02553 1.22619 1.01777 0.80254 0.96161 1.48920 1.61653 1.05356 1.18057 1.18958 0.77580 0.83248 0.83714 1.90642 1.44709 1.87308 1.23425 1.23166 0.97660 0.95015 1.05150 1.23323 0.99000 0.95564 0.95271 1.24643 1.01322 1.04583 0.89133 0.87351 1.22987 0.84194 1.02234 0.90608 1.89140 1.56399 1.45963 1.37708 1.22813 0.89708 0.91567 0.94061 1.23486 0.98212 1.01403 0.81749 1.21457 0.89173 0.92577 0.90871 0.90025 1.43104 1.10533 1.78899 1.06240 1.19044 0.97249 1.33420 0.84837 0.91141 1.25168 1.00428 1.02747 0.95773 1.69821 1.32593 1.53439 1.06862 0.85876 0.82273 0.78367 0.77975 1.21121 1.22687 1.18568 0.92903 0.90844 0.95507 0.90509 0.90860 0.92713 0.91065 0.88078 0.87996 0.85784 0.86909 0.90827 0.86902 0.90239 0.88804 0.90804 0.79991 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 7.10 71.98 0.51 -3.39 16 2 C -0.08 -2.13 1.03 -51.28 -0.05 -2.18 16 3 C -0.13 -2.47 8.26 71.98 0.59 -1.88 16 4 C 0.11 2.83 6.16 86.53 0.53 3.37 16 5 N -0.61 -17.71 3.32 -807.93 -2.68 -20.38 16 6 C 0.58 18.79 7.49 87.66 0.66 19.44 16 7 O -0.58 -22.40 17.27 -3.02 -0.05 -22.46 16 8 C -0.21 -5.86 2.04 -51.91 -0.11 -5.96 16 9 C -0.09 -2.53 9.77 31.49 0.31 -2.23 16 10 C -0.18 -5.24 5.99 -8.88 -0.05 -5.30 16 11 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 12 C 0.08 2.03 7.42 72.49 0.54 2.57 16 13 O -0.37 -9.80 11.32 -148.98 -1.69 -11.48 16 14 C 0.10 2.29 7.19 72.49 0.52 2.81 16 15 C 0.08 2.18 5.77 86.54 0.50 2.68 16 16 C 0.17 5.37 3.35 45.90 0.15 5.52 16 17 H 0.08 2.57 7.66 -2.39 -0.02 2.55 16 18 N -0.74 -30.97 4.37 -318.63 -1.39 -32.37 16 19 C -0.21 -10.95 10.44 84.03 0.88 -10.07 16 20 H 0.07 3.88 8.06 -2.91 -0.02 3.85 16 21 C -0.05 -2.72 5.50 84.86 0.47 -2.25 16 22 N -0.98 -59.25 13.97 21.65 0.30 -58.95 16 23 Si 0.93 44.27 27.74 68.60 1.90 46.17 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 26 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 27 H 0.05 1.73 7.76 -2.39 -0.02 1.71 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.03 0.91 6.97 -2.38 -0.02 0.90 16 30 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.93 7.57 -2.39 -0.02 1.91 16 34 H 0.10 1.95 7.83 -2.39 -0.02 1.93 16 35 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 36 H 0.12 2.84 8.07 -2.39 -0.02 2.82 16 37 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.07 2.06 7.83 -2.39 -0.02 2.04 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.08 1.77 7.35 -2.39 -0.02 1.76 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.42 5.86 -2.39 -0.01 2.41 16 43 H 0.36 15.61 2.98 -92.71 -0.28 15.33 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -66.11 345.71 2.50 -63.61 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.66 Total: 32.73 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.45 Total: 3.13 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.77 Total: -111.70 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.74 Total: -33.94 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Total: -66.11 2.50 -63.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995830455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.468 kcal (2) G-P(sol) polarization free energy of solvation -66.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds