Wall clock time and date at job start Tue Mar 31 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.30706 * 2 1 4 4 C 1.54393 * 110.34410 * 237.71339 * 2 1 3 5 5 N 1.48150 * 104.61406 * 264.99369 * 4 2 1 6 6 C 1.34781 * 127.83301 * 140.40527 * 5 4 2 7 7 O 1.21283 * 120.00125 * 354.81819 * 6 5 4 8 8 C 1.50701 * 119.99827 * 174.82040 * 6 5 4 9 9 C 1.53000 * 119.80583 * 304.77692 * 8 6 5 10 10 C 1.53005 * 60.65000 * 247.68418 * 9 8 6 11 11 H 1.09000 * 119.80417 * 112.30997 * 10 9 8 12 12 C 1.54475 * 118.06573 * 269.59177 * 10 9 8 13 13 O 1.44421 * 104.80615 * 86.83150 * 12 10 9 14 14 C 1.46768 * 105.41709 * 319.28878 * 13 12 10 15 15 C 1.48310 * 104.39510 * 320.46972 * 5 4 2 16 16 C 1.54290 * 110.34459 * 122.17542 * 2 1 3 17 17 H 1.08997 * 110.33956 * 359.88993 * 16 2 1 18 18 N 1.46505 * 110.34263 * 237.74006 * 16 2 1 19 19 C 1.36931 * 119.99711 * 156.47145 * 18 16 2 20 20 H 1.07998 * 120.00584 * 0.02562 * 19 18 16 21 21 C 1.38817 * 119.99715 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00203 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46958 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.46972 * 299.99304 * 23 21 19 26 26 H 1.48499 * 109.47552 * 59.99784 * 23 21 19 27 27 H 1.09001 * 109.46628 * 297.82334 * 1 2 3 28 28 H 1.08993 * 109.46802 * 57.82344 * 1 2 3 29 29 H 1.08996 * 109.47038 * 177.82765 * 1 2 3 30 30 H 1.09004 * 109.47490 * 182.17869 * 3 2 1 31 31 H 1.09002 * 109.47239 * 302.17799 * 3 2 1 32 32 H 1.08997 * 109.47334 * 62.17494 * 3 2 1 33 33 H 1.08994 * 110.40306 * 23.77676 * 4 2 1 34 34 H 1.08996 * 110.40853 * 146.09128 * 4 2 1 35 35 H 1.08991 * 117.43657 * 355.36240 * 9 8 6 36 36 H 1.09006 * 117.43069 * 140.01529 * 9 8 6 37 37 H 1.09004 * 110.36997 * 205.65904 * 12 10 9 38 38 H 1.08997 * 110.37557 * 327.98991 * 12 10 9 39 39 H 1.09004 * 110.29663 * 282.46370 * 14 13 12 40 40 H 1.09006 * 111.53806 * 159.38612 * 14 13 12 41 41 H 1.08994 * 110.38515 * 280.73556 * 15 5 4 42 42 H 1.08997 * 110.50693 * 158.25141 * 15 5 4 43 43 H 0.97000 * 119.99552 * 336.48071 * 18 16 2 44 44 H 0.97005 * 120.00076 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7733 -1.2238 5 7 2.3140 -2.1445 -0.7205 6 6 2.0772 -3.3119 -1.3513 7 8 1.5196 -3.3170 -2.4283 8 6 2.5054 -4.6107 -0.7182 9 6 3.9652 -4.8111 -0.3063 10 6 3.3903 -5.6391 -1.4574 11 1 3.7491 -5.4763 -2.4737 12 6 2.7439 -7.0011 -1.1210 13 8 1.3708 -6.6888 -0.8002 14 6 1.4265 -5.4561 -0.0056 15 6 2.8797 -1.9431 0.6356 16 6 2.0664 -0.7704 1.2245 17 1 1.2398 -1.1471 1.8269 18 7 2.9309 0.0943 2.0315 19 6 3.1248 -0.1788 3.3592 20 1 2.6408 -1.0318 3.8114 21 6 3.9436 0.6408 4.1240 22 7 4.5338 1.6801 3.5728 23 14 4.2087 0.2679 5.9351 24 1 5.1172 1.2853 6.5221 25 1 2.9041 0.3024 6.6437 26 1 4.8149 -1.0800 6.0794 27 1 -0.3632 0.4797 0.9089 28 1 -0.3633 0.5472 -0.8698 29 1 -0.3633 -1.0269 -0.0390 30 1 3.1502 1.4193 -0.0391 31 1 1.6738 1.9656 -0.8698 32 1 1.7372 1.9422 0.9088 33 1 1.3223 -0.7890 -2.0197 34 1 2.9938 -0.3244 -1.5803 35 1 4.6716 -4.0209 -0.5599 36 1 4.1550 -5.3252 0.6360 37 1 2.7902 -7.6664 -1.9833 38 1 3.2402 -7.4552 -0.2634 39 1 1.7327 -5.6787 1.0166 40 1 0.4700 -4.9332 -0.0107 41 1 3.9352 -1.6792 0.5713 42 1 2.7473 -2.8395 1.2415 43 1 3.3658 0.8603 1.6252 44 1 4.3965 1.8736 2.6323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995830456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:41 Heat of formation + Delta-G solvation = -19.824451 kcal Electronic energy + Delta-G solvation = -25016.242071 eV Core-core repulsion = 21549.489068 eV Total energy + Delta-G solvation = -3466.753003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88744 -39.48880 -37.74746 -34.79470 -34.39783 -33.21613 -30.78196 -29.18196 -27.61289 -26.96541 -26.45529 -25.62181 -23.78402 -22.82652 -21.57911 -21.22791 -18.93701 -18.49850 -17.53449 -16.99815 -16.27090 -15.91209 -15.44128 -15.34148 -14.91707 -14.56376 -14.21780 -13.88480 -13.79357 -13.62318 -13.19185 -12.95534 -12.87256 -12.70405 -12.18358 -12.14198 -11.81863 -11.67848 -11.43371 -11.34253 -10.99324 -10.98728 -10.84532 -10.61821 -10.40265 -10.33856 -10.10757 -10.03233 -9.91012 -9.61047 -9.26294 -9.07707 -8.50526 -7.17585 -6.20778 -3.22692 2.55958 2.92899 3.22339 3.45657 3.48114 3.65909 3.75162 4.18227 4.36436 4.43725 4.58832 4.70350 4.76575 4.87215 4.99673 5.07591 5.10595 5.37098 5.42408 5.43519 5.46732 5.53361 5.55238 5.58531 5.63861 5.66638 5.77653 5.83124 5.86897 5.91238 6.03601 6.13155 6.17209 6.21339 6.30526 6.38435 6.40384 6.48832 6.65075 6.80339 7.69457 7.72888 8.24885 8.64731 9.09424 9.95887 10.10058 11.26748 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.004861 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.042216 B = 5758.629814 C = 6924.935672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.116 3.884 5 N -0.612 5.612 6 C 0.576 3.424 7 O -0.544 6.544 8 C -0.194 4.194 9 C -0.121 4.121 10 C -0.161 4.161 11 H 0.125 0.875 12 C 0.075 3.925 13 O -0.372 6.372 14 C 0.096 3.904 15 C 0.081 3.919 16 C 0.181 3.819 17 H 0.064 0.936 18 N -0.727 5.727 19 C -0.338 4.338 20 H 0.065 0.935 21 C -0.039 4.039 22 N -0.940 5.940 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.374 0.626 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -11.050 -8.064 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.189 4.189 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.364 3.636 7 O -0.422 6.422 8 C -0.197 4.197 9 C -0.158 4.158 10 C -0.180 4.180 11 H 0.143 0.857 12 C -0.001 4.001 13 O -0.291 6.291 14 C 0.019 3.981 15 C -0.045 4.045 16 C 0.069 3.931 17 H 0.082 0.918 18 N -0.371 5.371 19 C -0.469 4.469 20 H 0.083 0.917 21 C -0.238 4.238 22 N -0.585 5.585 23 Si 0.909 3.091 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.222 1.222 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.211 0.789 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.868 -10.914 -7.223 13.398 hybrid contribution -0.346 -0.149 -1.454 1.502 sum -3.214 -11.063 -8.678 14.422 Atomic orbital electron populations 1.21783 0.93938 1.01363 1.01682 1.21763 0.95981 0.96054 0.95244 1.21692 1.00851 0.94419 1.01915 1.22441 1.00553 0.80880 0.96744 1.48989 1.62081 1.04885 1.18546 1.18657 0.78462 0.82435 0.84079 1.90687 1.42816 1.86720 1.21936 1.23115 0.93792 0.96422 1.06394 1.23277 0.92642 1.01201 0.98631 1.24387 1.02305 0.91919 0.99398 0.85680 1.22893 0.82222 0.94219 1.00805 1.89544 1.25037 1.42069 1.72469 1.23110 0.98012 0.83381 0.93557 1.23650 0.99057 1.00978 0.80795 1.21057 0.92523 0.89404 0.90161 0.91844 1.42704 1.55622 1.31046 1.07716 1.20051 1.28234 1.12182 0.86385 0.91716 1.25745 0.96766 0.95424 1.05815 1.70904 1.45616 1.28446 1.13520 0.83268 0.76002 0.75293 0.74580 1.21025 1.22214 1.22228 0.92111 0.92943 0.93007 0.92337 0.93283 0.91051 0.90392 0.91295 0.87293 0.87537 0.88309 0.91587 0.90493 0.88172 0.90819 0.91027 0.78893 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.24 37.16 0.31 -1.55 16 2 C -0.09 -1.38 1.03 -153.10 -0.16 -1.54 16 3 C -0.13 -2.04 7.11 37.16 0.26 -1.77 16 4 C 0.12 1.77 6.17 -2.40 -0.01 1.75 16 5 N -0.61 -9.60 3.32 -169.17 -0.56 -10.16 16 6 C 0.58 9.40 7.38 -10.98 -0.08 9.32 16 7 O -0.54 -10.64 17.35 5.55 0.10 -10.54 16 8 C -0.19 -2.57 1.88 -154.09 -0.29 -2.86 16 9 C -0.12 -1.31 8.95 -26.73 -0.24 -1.55 16 10 C -0.16 -1.81 7.12 -89.05 -0.63 -2.44 16 11 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 12 C 0.08 0.76 7.45 37.93 0.28 1.05 16 13 O -0.37 -4.97 11.72 -35.23 -0.41 -5.38 16 14 C 0.10 1.19 7.41 37.94 0.28 1.47 16 15 C 0.08 1.33 6.07 -2.32 -0.01 1.31 16 16 C 0.18 3.30 3.33 -66.52 -0.22 3.08 16 17 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 18 N -0.73 -16.32 4.60 -52.07 -0.24 -16.56 16 19 C -0.34 -8.71 9.96 -15.06 -0.15 -8.86 16 20 H 0.06 1.65 7.83 -52.49 -0.41 1.23 16 21 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 22 N -0.94 -27.39 13.70 55.49 0.76 -26.63 16 23 Si 1.08 24.51 29.92 -169.99 -5.09 19.42 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.95 6.94 -51.93 -0.36 0.59 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 33 H 0.08 1.19 7.56 -51.93 -0.39 0.80 16 34 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 35 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.28 8.02 -51.93 -0.42 0.86 16 41 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 42 H 0.07 1.12 7.28 -51.93 -0.38 0.74 16 43 H 0.37 8.62 3.89 -40.82 -0.16 8.46 16 44 H 0.25 7.27 6.78 -40.82 -0.28 6.99 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -31.31 350.54 -7.97 -39.27 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.04 Total: 9.05 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.76 Total: -3.75 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.04 Total: -53.35 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.32 Total: -15.92 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.09 Total: 19.42 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.31 -7.97 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995830456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.449 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds