Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.30706 * 2 1 4 4 C 1.54393 * 110.34410 * 237.71339 * 2 1 3 5 5 N 1.48150 * 104.61406 * 264.99369 * 4 2 1 6 6 C 1.34781 * 127.83301 * 140.40527 * 5 4 2 7 7 O 1.21283 * 120.00125 * 354.81819 * 6 5 4 8 8 C 1.50701 * 119.99827 * 174.82040 * 6 5 4 9 9 C 1.53000 * 119.80583 * 304.77692 * 8 6 5 10 10 C 1.53005 * 60.65000 * 247.68418 * 9 8 6 11 11 H 1.09000 * 119.80417 * 112.30997 * 10 9 8 12 12 C 1.54475 * 118.06573 * 269.59177 * 10 9 8 13 13 O 1.44421 * 104.80615 * 86.83150 * 12 10 9 14 14 C 1.46768 * 105.41709 * 319.28878 * 13 12 10 15 15 C 1.48310 * 104.39510 * 320.46972 * 5 4 2 16 16 C 1.54290 * 110.34459 * 122.17542 * 2 1 3 17 17 H 1.08997 * 110.33956 * 359.88993 * 16 2 1 18 18 N 1.46505 * 110.34263 * 237.74006 * 16 2 1 19 19 C 1.36931 * 119.99711 * 156.47145 * 18 16 2 20 20 H 1.07998 * 120.00584 * 0.02562 * 19 18 16 21 21 C 1.38817 * 119.99715 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00203 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46958 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.46972 * 299.99304 * 23 21 19 26 26 H 1.48499 * 109.47552 * 59.99784 * 23 21 19 27 27 H 1.09001 * 109.46628 * 297.82334 * 1 2 3 28 28 H 1.08993 * 109.46802 * 57.82344 * 1 2 3 29 29 H 1.08996 * 109.47038 * 177.82765 * 1 2 3 30 30 H 1.09004 * 109.47490 * 182.17869 * 3 2 1 31 31 H 1.09002 * 109.47239 * 302.17799 * 3 2 1 32 32 H 1.08997 * 109.47334 * 62.17494 * 3 2 1 33 33 H 1.08994 * 110.40306 * 23.77676 * 4 2 1 34 34 H 1.08996 * 110.40853 * 146.09128 * 4 2 1 35 35 H 1.08991 * 117.43657 * 355.36240 * 9 8 6 36 36 H 1.09006 * 117.43069 * 140.01529 * 9 8 6 37 37 H 1.09004 * 110.36997 * 205.65904 * 12 10 9 38 38 H 1.08997 * 110.37557 * 327.98991 * 12 10 9 39 39 H 1.09004 * 110.29663 * 282.46370 * 14 13 12 40 40 H 1.09006 * 111.53806 * 159.38612 * 14 13 12 41 41 H 1.08994 * 110.38515 * 280.73556 * 15 5 4 42 42 H 1.08997 * 110.50693 * 158.25141 * 15 5 4 43 43 H 0.97000 * 119.99552 * 336.48071 * 18 16 2 44 44 H 0.97005 * 120.00076 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 6 2.0667 -0.7733 -1.2238 5 7 2.3140 -2.1445 -0.7205 6 6 2.0772 -3.3119 -1.3513 7 8 1.5196 -3.3170 -2.4283 8 6 2.5054 -4.6107 -0.7182 9 6 3.9652 -4.8111 -0.3063 10 6 3.3903 -5.6391 -1.4574 11 1 3.7491 -5.4763 -2.4737 12 6 2.7439 -7.0011 -1.1210 13 8 1.3708 -6.6888 -0.8002 14 6 1.4265 -5.4561 -0.0056 15 6 2.8797 -1.9431 0.6356 16 6 2.0664 -0.7704 1.2245 17 1 1.2398 -1.1471 1.8269 18 7 2.9309 0.0943 2.0315 19 6 3.1248 -0.1788 3.3592 20 1 2.6408 -1.0318 3.8114 21 6 3.9436 0.6408 4.1240 22 7 4.5338 1.6801 3.5728 23 14 4.2087 0.2679 5.9351 24 1 5.1172 1.2853 6.5221 25 1 2.9041 0.3024 6.6437 26 1 4.8149 -1.0800 6.0794 27 1 -0.3632 0.4797 0.9089 28 1 -0.3633 0.5472 -0.8698 29 1 -0.3633 -1.0269 -0.0390 30 1 3.1502 1.4193 -0.0391 31 1 1.6738 1.9656 -0.8698 32 1 1.7372 1.9422 0.9088 33 1 1.3223 -0.7890 -2.0197 34 1 2.9938 -0.3244 -1.5803 35 1 4.6716 -4.0209 -0.5599 36 1 4.1550 -5.3252 0.6360 37 1 2.7902 -7.6664 -1.9833 38 1 3.2402 -7.4552 -0.2634 39 1 1.7327 -5.6787 1.0166 40 1 0.4700 -4.9332 -0.0107 41 1 3.9352 -1.6792 0.5713 42 1 2.7473 -2.8395 1.2415 43 1 3.3658 0.8603 1.6252 44 1 4.3965 1.8736 2.6323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995830456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -39.604497 kcal Electronic energy + Delta-G solvation = -25017.099798 eV Core-core repulsion = 21549.489068 eV Total energy + Delta-G solvation = -3467.610730 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97779 -40.70657 -39.08504 -36.18725 -35.74920 -34.58732 -32.55684 -30.09987 -29.09505 -28.31278 -27.71594 -26.49251 -25.60134 -24.13417 -22.91298 -22.11480 -20.22951 -19.73967 -19.40989 -18.16022 -17.55097 -17.07683 -16.67322 -16.48962 -16.32353 -15.73588 -15.54989 -15.42422 -15.06344 -15.01805 -14.42416 -14.24379 -14.10700 -13.80254 -13.50865 -13.30223 -13.06568 -12.96997 -12.69056 -12.61688 -12.59804 -12.30505 -12.06092 -11.92875 -11.83004 -11.73048 -11.55605 -11.34551 -11.17233 -10.96476 -10.85373 -10.69651 -9.88281 -9.08274 -8.31799 -5.27522 1.31810 1.63551 1.71155 1.73188 1.87873 2.26312 2.75002 2.86582 3.23506 3.28222 3.42934 3.45553 3.62280 3.65496 3.76893 3.82657 3.95076 3.96497 4.25492 4.28487 4.29037 4.41417 4.45042 4.56173 4.58440 4.64813 4.65810 4.72791 4.74831 4.78033 4.80426 4.90151 4.90491 4.98580 5.01469 5.06032 5.22745 5.29829 5.41218 5.55405 5.68200 6.41791 6.56783 6.95728 7.14014 8.04441 8.15566 9.19540 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.004861 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.042216 B = 5758.629814 C = 6924.935672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.124 4.124 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.575 3.425 7 O -0.581 6.581 8 C -0.219 4.219 9 C -0.104 4.104 10 C -0.153 4.153 11 H 0.123 0.877 12 C 0.073 3.927 13 O -0.396 6.396 14 C 0.098 3.902 15 C 0.097 3.903 16 C 0.174 3.826 17 H 0.055 0.945 18 N -0.736 5.736 19 C -0.328 4.328 20 H 0.068 0.932 21 C -0.097 4.097 22 N -0.976 5.976 23 Si 1.121 2.879 24 H -0.298 1.298 25 H -0.281 1.281 26 H -0.276 1.276 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.370 0.630 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -12.744 -7.896 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.083 4.083 3 C -0.181 4.181 4 C -0.006 4.006 5 N -0.340 5.340 6 C 0.364 3.636 7 O -0.461 6.461 8 C -0.222 4.222 9 C -0.141 4.141 10 C -0.172 4.172 11 H 0.141 0.859 12 C -0.003 4.003 13 O -0.316 6.316 14 C 0.021 3.979 15 C -0.028 4.028 16 C 0.063 3.937 17 H 0.073 0.927 18 N -0.380 5.380 19 C -0.459 4.459 20 H 0.086 0.914 21 C -0.289 4.289 22 N -0.624 5.624 23 Si 0.947 3.053 24 H -0.225 1.225 25 H -0.208 1.208 26 H -0.202 1.202 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.147 0.853 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.206 0.794 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.921 -12.646 -7.078 14.783 hybrid contribution -0.393 0.353 -1.607 1.692 sum -3.314 -12.293 -8.685 15.412 Atomic orbital electron populations 1.21736 0.92695 1.01489 1.02317 1.21700 0.96890 0.95706 0.94026 1.21598 1.00134 0.94465 1.01942 1.22464 1.00931 0.80726 0.96466 1.48980 1.61718 1.05172 1.18142 1.19196 0.77501 0.83304 0.83586 1.90661 1.44525 1.87310 1.23623 1.23133 0.95296 0.95493 1.08316 1.23355 0.90500 1.00779 0.99489 1.24524 1.01138 0.92018 0.99520 0.85932 1.23131 0.80858 0.93728 1.02551 1.89519 1.26976 1.42232 1.72834 1.23144 0.97260 0.83011 0.94447 1.23284 0.97902 1.00463 0.81188 1.21213 0.91878 0.89835 0.90738 0.92675 1.42812 1.56259 1.31678 1.07239 1.20362 1.26538 1.11303 0.87711 0.91379 1.26955 0.97359 0.95423 1.09167 1.71000 1.47873 1.30331 1.13195 0.82690 0.76238 0.75513 0.70818 1.22479 1.20783 1.20233 0.92704 0.90980 0.93227 0.93459 0.90558 0.93371 0.90119 0.90723 0.87760 0.85321 0.86819 0.89124 0.88207 0.89366 0.91836 0.89869 0.79395 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 8.24 71.98 0.59 -2.81 16 2 C -0.08 -2.47 1.03 -51.27 -0.05 -2.52 16 3 C -0.12 -3.79 7.11 71.98 0.51 -3.28 16 4 C 0.12 3.42 6.17 86.54 0.53 3.95 16 5 N -0.61 -18.48 3.32 -807.52 -2.68 -21.16 16 6 C 0.57 18.26 7.38 87.66 0.65 18.91 16 7 O -0.58 -22.54 17.35 -3.04 -0.05 -22.59 16 8 C -0.22 -5.44 1.88 -51.91 -0.10 -5.54 16 9 C -0.10 -2.00 8.95 30.60 0.27 -1.73 16 10 C -0.15 -3.10 7.12 -9.78 -0.07 -3.17 16 11 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 12 C 0.07 1.29 7.45 72.48 0.54 1.83 16 13 O -0.40 -9.82 11.72 -148.98 -1.75 -11.57 16 14 C 0.10 2.26 7.41 72.49 0.54 2.80 16 15 C 0.10 3.08 6.07 86.50 0.53 3.60 16 16 C 0.17 6.25 3.33 45.90 0.15 6.40 16 17 H 0.06 2.08 7.67 -2.39 -0.02 2.06 16 18 N -0.74 -33.10 4.60 -318.64 -1.47 -34.56 16 19 C -0.33 -16.77 9.96 84.04 0.84 -15.93 16 20 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 21 C -0.10 -5.27 5.50 84.86 0.47 -4.80 16 22 N -0.98 -57.70 13.70 21.65 0.30 -57.40 16 23 Si 1.12 49.00 29.92 68.60 2.05 51.05 16 24 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.55 6.94 -2.38 -0.02 1.53 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 33 H 0.08 2.36 7.56 -2.39 -0.02 2.34 16 34 H 0.07 2.11 7.83 -2.39 -0.02 2.10 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.09 2.18 8.02 -2.38 -0.02 2.17 16 41 H 0.06 2.19 8.06 -2.39 -0.02 2.17 16 42 H 0.08 2.45 7.28 -2.39 -0.02 2.43 16 43 H 0.37 17.33 3.89 -92.71 -0.36 16.97 16 44 H 0.24 14.34 6.78 -92.70 -0.63 13.71 16 Total: -1.00 -67.27 350.54 2.57 -64.70 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.77 Total: 33.84 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.40 Total: -2.30 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -3.85 Total: -113.13 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.80 Total: -34.16 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Total: -67.27 2.57 -64.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995830456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.100 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds