Wall clock time and date at job start Tue Mar 31 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.91500 * 2 1 4 4 C 1.55133 * 111.19119 * 236.09189 * 2 1 3 5 5 N 1.47426 * 104.72160 * 279.19036 * 4 2 1 6 6 C 1.34776 * 125.64776 * 155.82145 * 5 4 2 7 7 O 1.21277 * 119.99983 * 359.71549 * 6 5 4 8 8 C 1.50699 * 119.99828 * 179.71335 * 6 5 4 9 9 H 1.08991 * 115.48618 * 325.32484 * 8 6 5 10 10 C 1.53005 * 117.42836 * 110.65156 * 8 6 5 11 11 H 1.08996 * 119.81355 * 355.36626 * 10 8 6 12 12 C 1.54481 * 118.06330 * 198.08307 * 10 8 6 13 13 O 1.44425 * 104.80420 * 321.13184 * 12 10 8 14 14 C 1.44430 * 105.27508 * 319.48787 * 13 12 10 15 15 C 1.53006 * 117.43126 * 179.97438 * 8 6 5 16 16 H 1.09000 * 119.80386 * 4.63674 * 15 8 6 17 17 C 1.47021 * 108.70231 * 335.55117 * 5 4 2 18 18 C 1.54319 * 107.27320 * 1.29049 * 17 5 4 19 19 H 1.08997 * 110.72250 * 140.55225 * 18 17 5 20 20 N 1.46500 * 110.72245 * 263.82754 * 18 17 5 21 21 C 1.36940 * 119.99792 * 273.54740 * 20 18 17 22 22 H 1.07995 * 120.00201 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99581 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00324 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47154 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46894 * 119.99865 * 25 23 21 28 28 H 1.48499 * 109.47029 * 240.00103 * 25 23 21 29 29 H 1.08994 * 109.46870 * 296.09351 * 1 2 3 30 30 H 1.08998 * 109.47004 * 56.09907 * 1 2 3 31 31 H 1.09000 * 109.46973 * 176.09502 * 1 2 3 32 32 H 1.09000 * 109.47298 * 183.90255 * 3 2 1 33 33 H 1.08999 * 109.47331 * 303.90605 * 3 2 1 34 34 H 1.09000 * 109.47054 * 63.90533 * 3 2 1 35 35 H 1.09005 * 110.49695 * 160.35241 * 4 2 1 36 36 H 1.08994 * 110.34432 * 37.95685 * 4 2 1 37 37 H 1.08994 * 110.37350 * 79.96458 * 12 10 8 38 38 H 1.09001 * 110.37399 * 202.30489 * 12 10 8 39 39 H 1.08996 * 110.36965 * 281.67960 * 14 13 12 40 40 H 1.08997 * 110.37283 * 159.34497 * 14 13 12 41 41 H 1.09007 * 109.87868 * 120.70627 * 17 5 4 42 42 H 1.09001 * 109.88570 * 241.87004 * 17 5 4 43 43 H 0.96995 * 119.99957 * 93.53908 * 20 18 17 44 44 H 0.97002 * 119.99664 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0908 -0.8069 -1.2004 5 7 2.0139 -2.2159 -0.7734 6 6 1.9472 -3.2828 -1.5942 7 8 1.9421 -3.1237 -2.7964 8 6 1.8790 -4.6736 -1.0179 9 1 2.4417 -4.8280 -0.0973 10 6 0.5633 -5.4385 -1.1764 11 1 -0.2999 -4.9451 -1.6230 12 6 0.3139 -6.6540 -0.2562 13 8 1.5967 -7.3097 -0.1552 14 6 2.1586 -7.2534 -1.4845 15 6 1.8043 -5.8419 -2.0030 16 1 1.8784 -5.6531 -3.0740 17 6 2.0286 -2.2647 0.6959 18 6 2.0862 -0.8080 1.2022 19 1 1.4524 -0.6793 2.0795 20 7 3.4667 -0.4156 1.4961 21 6 4.0066 -0.6806 2.7264 22 1 3.4146 -1.1785 3.4800 23 6 5.3149 -0.3092 3.0047 24 7 6.0362 0.2980 2.0864 25 14 6.0512 -0.6700 4.6833 26 1 5.0415 -1.3548 5.5299 27 1 7.2395 -1.5463 4.5244 28 1 6.4580 0.6036 5.3295 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6705 1.9732 -0.8529 34 1 1.7837 1.9299 0.9229 35 1 3.1254 -0.5266 -1.3988 36 1 1.4765 -0.6448 -2.0861 37 1 -0.0217 -6.3233 0.7266 38 1 -0.4205 -7.3240 -0.7033 39 1 1.7070 -8.0153 -2.1198 40 1 3.2401 -7.3832 -1.4451 41 1 1.1219 -2.7480 1.0598 42 1 2.9064 -2.8117 1.0399 43 1 3.9983 0.0318 0.8194 44 1 6.9503 0.5578 2.2812 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996156989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:57 Heat of formation + Delta-G solvation = -30.874291 kcal Electronic energy + Delta-G solvation = -24716.487370 eV Core-core repulsion = 21249.255210 eV Total energy + Delta-G solvation = -3467.232160 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84831 -39.60601 -37.79388 -34.40253 -33.95452 -33.15911 -30.78278 -28.89907 -27.96192 -27.47887 -26.70933 -25.42532 -23.84856 -21.99283 -21.19009 -20.80593 -18.97677 -18.60024 -17.36483 -17.10302 -16.15374 -15.92366 -15.69051 -15.24276 -14.81778 -14.68573 -14.11620 -13.91365 -13.78265 -13.23265 -12.85079 -12.78279 -12.71029 -12.48001 -12.17710 -11.86501 -11.82939 -11.70196 -11.65049 -11.52294 -11.01317 -10.93568 -10.62151 -10.50449 -10.39568 -10.33329 -10.22320 -9.90035 -9.84598 -9.69520 -9.56724 -9.02010 -8.25414 -7.08117 -5.85552 -3.15609 2.55552 3.11113 3.38696 3.44795 3.46904 3.54047 3.78931 4.42097 4.50595 4.51140 4.65697 4.69945 4.78750 5.07849 5.15588 5.19039 5.21305 5.25884 5.41371 5.44101 5.49909 5.56160 5.59752 5.69214 5.73096 5.74264 5.87103 5.92830 5.97339 6.11111 6.17301 6.20369 6.27430 6.34381 6.38369 6.52620 6.55887 6.64264 6.76463 6.89623 7.63120 7.85761 8.32150 8.39937 9.44452 9.98853 10.33594 11.36627 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.004896 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.317627 B = 5717.184568 C = 7009.023919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.557 3.443 7 O -0.555 6.555 8 C -0.135 4.135 9 H 0.127 0.873 10 C -0.176 4.176 11 H 0.127 0.873 12 C 0.073 3.927 13 O -0.372 6.372 14 C 0.072 3.928 15 C -0.168 4.168 16 H 0.135 0.865 17 C 0.072 3.928 18 C 0.179 3.821 19 H 0.070 0.930 20 N -0.712 5.712 21 C -0.246 4.246 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.387 0.613 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 -8.749 -6.151 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.183 4.183 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.346 3.654 7 O -0.435 6.435 8 C -0.156 4.156 9 H 0.145 0.855 10 C -0.195 4.195 11 H 0.145 0.855 12 C -0.004 4.004 13 O -0.291 6.291 14 C -0.005 4.005 15 C -0.187 4.187 16 H 0.153 0.847 17 C -0.054 4.054 18 C 0.066 3.934 19 H 0.088 0.912 20 N -0.353 5.353 21 C -0.377 4.377 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.223 0.777 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.843 -8.859 -6.435 16.877 hybrid contribution 0.683 0.034 0.540 0.871 sum -12.161 -8.825 -5.895 16.140 Atomic orbital electron populations 1.21671 0.93953 1.01425 1.01592 1.22051 0.95280 0.96092 0.95619 1.21577 1.02108 0.93553 1.01063 1.22337 1.01052 0.79776 0.96995 1.48284 1.70823 1.05848 1.07926 1.19019 0.76369 0.84454 0.85591 1.90655 1.52017 1.86183 1.14642 1.22047 1.01341 0.90203 1.01979 0.85511 1.23985 0.92459 1.00167 1.02849 0.85544 1.22952 0.86546 0.90585 1.00284 1.89191 1.32413 1.78892 1.28598 1.22978 1.00093 0.93525 0.83897 1.24017 1.02018 0.93378 0.99264 0.84747 1.23296 1.00924 1.02772 0.78377 1.21223 0.88695 0.89147 0.94293 0.91182 1.42466 1.08232 1.69903 1.14737 1.19262 0.95488 1.32398 0.90520 0.90946 1.24743 0.96824 1.00958 0.97908 1.69666 1.09502 1.45329 1.33153 0.86140 0.79064 0.77437 0.83647 1.20473 1.21858 1.21827 0.92259 0.92843 0.92906 0.91189 0.93623 0.92040 0.91172 0.91253 0.88390 0.90966 0.90919 0.88374 0.92635 0.90452 0.77744 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.59 37.16 0.32 -1.33 16 2 C -0.09 -1.37 0.83 -152.24 -0.13 -1.50 16 3 C -0.13 -1.96 8.22 37.16 0.31 -1.66 16 4 C 0.12 2.02 5.82 -2.41 -0.01 2.00 16 5 N -0.60 -10.14 3.31 -170.38 -0.56 -10.71 16 6 C 0.56 9.58 7.63 -10.99 -0.08 9.49 16 7 O -0.56 -10.97 16.60 5.56 0.09 -10.87 16 8 C -0.13 -1.91 4.90 -91.77 -0.45 -2.36 16 9 H 0.13 1.87 7.66 -51.93 -0.40 1.48 16 10 C -0.18 -1.99 6.95 -89.07 -0.62 -2.61 16 11 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 12 C 0.07 0.72 7.53 37.93 0.29 1.00 16 13 O -0.37 -4.54 11.31 -35.23 -0.40 -4.94 16 14 C 0.07 0.74 7.54 37.94 0.29 1.03 16 15 C -0.17 -2.03 6.68 -89.06 -0.60 -2.63 16 16 H 0.13 1.68 7.81 -51.93 -0.41 1.27 16 17 C 0.07 1.22 5.71 -3.07 -0.02 1.20 16 18 C 0.18 3.24 2.86 -66.10 -0.19 3.05 16 19 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 20 N -0.71 -16.39 4.61 -51.65 -0.24 -16.63 16 21 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 25 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 36 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.49 7.96 -51.93 -0.41 1.07 16 43 H 0.39 9.60 6.10 -40.82 -0.25 9.35 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -30.53 353.85 -8.45 -38.98 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.23 Total: 9.63 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.15 Total: -1.13 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.08 Total: -53.61 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.31 Total: -15.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.53 -8.45 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996156989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.107 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds