Wall clock time and date at job start Tue Mar 31 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.91500 * 2 1 4 4 C 1.55133 * 111.19119 * 236.09189 * 2 1 3 5 5 N 1.47426 * 104.72160 * 279.19036 * 4 2 1 6 6 C 1.34776 * 125.64776 * 155.82145 * 5 4 2 7 7 O 1.21277 * 119.99983 * 359.71549 * 6 5 4 8 8 C 1.50699 * 119.99828 * 179.71335 * 6 5 4 9 9 H 1.08991 * 115.48618 * 325.32484 * 8 6 5 10 10 C 1.53005 * 117.42836 * 110.65156 * 8 6 5 11 11 H 1.08996 * 119.81355 * 355.36626 * 10 8 6 12 12 C 1.54481 * 118.06330 * 198.08307 * 10 8 6 13 13 O 1.44425 * 104.80420 * 321.13184 * 12 10 8 14 14 C 1.44430 * 105.27508 * 319.48787 * 13 12 10 15 15 C 1.53006 * 117.43126 * 179.97438 * 8 6 5 16 16 H 1.09000 * 119.80386 * 4.63674 * 15 8 6 17 17 C 1.47021 * 108.70231 * 335.55117 * 5 4 2 18 18 C 1.54319 * 107.27320 * 1.29049 * 17 5 4 19 19 H 1.08997 * 110.72250 * 140.55225 * 18 17 5 20 20 N 1.46500 * 110.72245 * 263.82754 * 18 17 5 21 21 C 1.36940 * 119.99792 * 273.54740 * 20 18 17 22 22 H 1.07995 * 120.00201 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99581 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00324 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47154 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46894 * 119.99865 * 25 23 21 28 28 H 1.48499 * 109.47029 * 240.00103 * 25 23 21 29 29 H 1.08994 * 109.46870 * 296.09351 * 1 2 3 30 30 H 1.08998 * 109.47004 * 56.09907 * 1 2 3 31 31 H 1.09000 * 109.46973 * 176.09502 * 1 2 3 32 32 H 1.09000 * 109.47298 * 183.90255 * 3 2 1 33 33 H 1.08999 * 109.47331 * 303.90605 * 3 2 1 34 34 H 1.09000 * 109.47054 * 63.90533 * 3 2 1 35 35 H 1.09005 * 110.49695 * 160.35241 * 4 2 1 36 36 H 1.08994 * 110.34432 * 37.95685 * 4 2 1 37 37 H 1.08994 * 110.37350 * 79.96458 * 12 10 8 38 38 H 1.09001 * 110.37399 * 202.30489 * 12 10 8 39 39 H 1.08996 * 110.36965 * 281.67960 * 14 13 12 40 40 H 1.08997 * 110.37283 * 159.34497 * 14 13 12 41 41 H 1.09007 * 109.87868 * 120.70627 * 17 5 4 42 42 H 1.09001 * 109.88570 * 241.87004 * 17 5 4 43 43 H 0.96995 * 119.99957 * 93.53908 * 20 18 17 44 44 H 0.97002 * 119.99664 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0908 -0.8069 -1.2004 5 7 2.0139 -2.2159 -0.7734 6 6 1.9472 -3.2828 -1.5942 7 8 1.9421 -3.1237 -2.7964 8 6 1.8790 -4.6736 -1.0179 9 1 2.4417 -4.8280 -0.0973 10 6 0.5633 -5.4385 -1.1764 11 1 -0.2999 -4.9451 -1.6230 12 6 0.3139 -6.6540 -0.2562 13 8 1.5967 -7.3097 -0.1552 14 6 2.1586 -7.2534 -1.4845 15 6 1.8043 -5.8419 -2.0030 16 1 1.8784 -5.6531 -3.0740 17 6 2.0286 -2.2647 0.6959 18 6 2.0862 -0.8080 1.2022 19 1 1.4524 -0.6793 2.0795 20 7 3.4667 -0.4156 1.4961 21 6 4.0066 -0.6806 2.7264 22 1 3.4146 -1.1785 3.4800 23 6 5.3149 -0.3092 3.0047 24 7 6.0362 0.2980 2.0864 25 14 6.0512 -0.6700 4.6833 26 1 5.0415 -1.3548 5.5299 27 1 7.2395 -1.5463 4.5244 28 1 6.4580 0.6036 5.3295 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6705 1.9732 -0.8529 34 1 1.7837 1.9299 0.9229 35 1 3.1254 -0.5266 -1.3988 36 1 1.4765 -0.6448 -2.0861 37 1 -0.0217 -6.3233 0.7266 38 1 -0.4205 -7.3240 -0.7033 39 1 1.7070 -8.0153 -2.1198 40 1 3.2401 -7.3832 -1.4451 41 1 1.1219 -2.7480 1.0598 42 1 2.9064 -2.8117 1.0399 43 1 3.9983 0.0318 0.8194 44 1 6.9503 0.5578 2.2812 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996156989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:56 Heat of formation + Delta-G solvation = -50.289255 kcal Electronic energy + Delta-G solvation = -24717.329266 eV Core-core repulsion = 21249.255210 eV Total energy + Delta-G solvation = -3468.074056 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.92866 -40.83335 -39.14869 -35.74828 -35.39849 -34.55804 -32.61574 -29.69056 -29.47509 -28.65533 -28.02050 -26.54478 -25.65862 -23.33694 -22.40642 -21.69887 -20.37027 -19.84852 -19.10809 -18.42411 -17.34739 -17.11416 -16.81784 -16.51403 -16.08179 -15.84499 -15.77092 -15.43349 -15.02419 -14.65877 -14.24667 -14.22904 -13.74793 -13.54001 -13.45165 -13.25561 -13.07812 -12.86255 -12.79257 -12.76804 -12.69465 -12.58416 -12.15570 -12.02937 -11.86392 -11.47626 -11.39711 -11.32702 -11.22450 -11.08309 -10.91208 -10.60761 -9.68090 -9.01892 -7.93023 -5.21330 1.30340 1.48721 1.49922 1.58848 1.86955 2.50053 2.56924 2.88590 3.32952 3.38753 3.56279 3.57205 3.70080 3.79467 3.82981 3.87824 4.02930 4.06890 4.27161 4.30868 4.46158 4.49025 4.58031 4.63240 4.67862 4.75033 4.77485 4.80248 4.85050 4.88371 4.89939 4.92700 5.02550 5.08195 5.10164 5.25377 5.32310 5.39098 5.54020 5.59667 5.74049 6.28473 6.48922 7.03515 7.36118 8.09855 8.32778 9.30540 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.004896 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.317627 B = 5717.184568 C = 7009.023919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.120 4.120 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.554 3.446 7 O -0.586 6.586 8 C -0.158 4.158 9 H 0.117 0.883 10 C -0.153 4.153 11 H 0.136 0.864 12 C 0.073 3.927 13 O -0.395 6.395 14 C 0.074 3.926 15 C -0.169 4.169 16 H 0.129 0.871 17 C 0.085 3.915 18 C 0.169 3.831 19 H 0.081 0.919 20 N -0.724 5.724 21 C -0.234 4.234 22 H 0.082 0.918 23 C -0.072 4.072 24 N -0.970 5.970 25 Si 0.966 3.034 26 H -0.262 1.262 27 H -0.301 1.301 28 H -0.296 1.296 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.375 0.625 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 -10.126 -5.682 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.178 4.178 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.344 3.656 7 O -0.468 6.468 8 C -0.179 4.179 9 H 0.135 0.865 10 C -0.172 4.172 11 H 0.154 0.846 12 C -0.003 4.003 13 O -0.315 6.315 14 C -0.002 4.002 15 C -0.188 4.188 16 H 0.146 0.854 17 C -0.040 4.040 18 C 0.059 3.941 19 H 0.099 0.901 20 N -0.363 5.363 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.796 3.204 26 H -0.186 1.186 27 H -0.229 1.229 28 H -0.224 1.224 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.208 0.792 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.668 -10.262 -5.946 19.651 hybrid contribution 1.478 0.446 0.328 1.578 sum -14.190 -9.816 -5.618 18.146 Atomic orbital electron populations 1.21631 0.90992 1.02197 1.03077 1.22007 0.97303 0.95111 0.93248 1.21512 1.00043 0.94145 1.02086 1.22316 0.99759 0.80161 0.98059 1.48367 1.70667 1.06025 1.07959 1.19545 0.75372 0.85464 0.85229 1.90629 1.53479 1.86783 1.15892 1.21924 1.04428 0.89155 1.02376 0.86503 1.24119 0.91521 0.99291 1.02278 0.84584 1.23173 0.86266 0.90055 1.00777 1.89172 1.33612 1.79135 1.29533 1.23104 1.00510 0.92890 0.83691 1.24093 1.02664 0.93424 0.98584 0.85356 1.23049 1.01162 1.01471 0.78339 1.21494 0.86430 0.90273 0.95918 0.90117 1.42628 1.10104 1.69956 1.13653 1.19667 0.95350 1.30072 0.91442 0.89974 1.25472 0.97727 1.02212 1.01040 1.69823 1.09433 1.47737 1.35050 0.85173 0.78142 0.76750 0.80303 1.18638 1.22857 1.22379 0.90960 0.91187 0.92514 0.94491 0.91033 0.92236 0.93925 0.90408 0.87410 0.88097 0.88144 0.88355 0.89538 0.93163 0.79169 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 8.59 71.98 0.62 -2.11 16 2 C -0.08 -2.24 0.83 -50.71 -0.04 -2.28 16 3 C -0.12 -3.70 8.22 71.98 0.59 -3.11 16 4 C 0.12 3.99 5.82 86.93 0.51 4.50 16 5 N -0.60 -20.19 3.31 -811.35 -2.69 -22.87 16 6 C 0.55 18.93 7.63 87.66 0.67 19.60 16 7 O -0.59 -23.22 16.60 -3.02 -0.05 -23.27 16 8 C -0.16 -4.36 4.90 -11.54 -0.06 -4.41 16 9 H 0.12 3.45 7.66 -2.39 -0.02 3.43 16 10 C -0.15 -3.10 6.95 -9.79 -0.07 -3.17 16 11 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 12 C 0.07 1.20 7.53 72.49 0.55 1.75 16 13 O -0.40 -8.72 11.31 -148.98 -1.69 -10.40 16 14 C 0.07 1.38 7.54 72.49 0.55 1.93 16 15 C -0.17 -3.85 6.68 -9.79 -0.07 -3.92 16 16 H 0.13 3.10 7.81 -2.39 -0.02 3.08 16 17 C 0.09 2.81 5.71 86.73 0.49 3.31 16 18 C 0.17 5.98 2.86 46.18 0.13 6.12 16 19 H 0.08 2.72 8.03 -2.39 -0.02 2.70 16 20 N -0.72 -33.79 4.61 -317.34 -1.46 -35.25 16 21 C -0.23 -12.13 9.98 84.03 0.84 -11.29 16 22 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 24 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 25 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.25 7.91 -2.39 -0.02 1.23 16 32 H 0.04 1.38 6.38 -2.39 -0.02 1.37 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.65 7.99 -2.38 -0.02 1.63 16 36 H 0.08 2.46 7.95 -2.39 -0.02 2.44 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.05 1.94 7.96 -2.39 -0.02 1.92 16 43 H 0.37 19.34 6.10 -92.71 -0.57 18.77 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -67.39 353.85 2.02 -65.37 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.42 Total: 33.97 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.18 Total: 3.37 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.87 Total: -116.10 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.74 Total: -33.68 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.39 2.02 -65.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996156989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.076 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds