Wall clock time and date at job start Tue Mar 31 2020 07:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00211 * 2 1 4 4 H 1.09003 * 110.67123 * 357.04266 * 3 2 1 5 5 O 1.44371 * 110.61957 * 234.07374 * 3 2 1 6 6 C 1.43750 * 106.97566 * 201.43744 * 5 3 2 7 7 C 1.54098 * 107.29191 * 26.51445 * 6 5 3 8 8 C 1.54810 * 104.18940 * 357.96914 * 7 6 5 9 9 H 1.09006 * 110.91035 * 97.34971 * 8 7 6 10 10 C 1.50701 * 110.90966 * 220.92234 * 8 7 6 11 11 O 1.21276 * 120.00166 * 118.54509 * 10 8 7 12 12 N 1.34780 * 119.99585 * 298.54464 * 10 8 7 13 13 C 1.46957 * 120.65462 * 359.81587 * 12 10 8 14 14 C 1.53197 * 108.89063 * 233.53473 * 13 12 10 15 15 C 1.53040 * 109.31110 * 305.44560 * 14 13 12 16 16 C 1.53044 * 109.53662 * 61.36306 * 15 14 13 17 17 H 1.09001 * 109.52587 * 58.60428 * 16 15 14 18 18 N 1.46499 * 109.49460 * 178.68139 * 16 15 14 19 19 C 1.36941 * 120.00314 * 274.83576 * 18 16 15 20 20 H 1.07999 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00047 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00132 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 120.00362 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47104 * 89.99513 * 23 21 19 25 25 H 1.48495 * 109.47117 * 210.00143 * 23 21 19 26 26 H 1.48500 * 109.46913 * 329.99840 * 23 21 19 27 27 C 1.46926 * 120.62730 * 180.02562 * 12 10 8 28 28 H 1.07998 * 120.00184 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99744 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99992 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.87747 * 267.09251 * 6 5 3 32 32 H 1.08999 * 109.87354 * 145.94193 * 6 5 3 33 33 H 1.09002 * 110.49056 * 239.29131 * 7 6 5 34 34 H 1.09001 * 110.48387 * 116.64463 * 7 6 5 35 35 H 1.09001 * 109.46843 * 113.75468 * 13 12 10 36 36 H 1.08997 * 109.71602 * 353.46961 * 13 12 10 37 37 H 1.08995 * 109.50005 * 185.49506 * 14 13 12 38 38 H 1.08996 * 109.49270 * 65.39471 * 14 13 12 39 39 H 1.08994 * 109.45892 * 301.34445 * 15 14 13 40 40 H 1.09001 * 109.45142 * 181.37673 * 15 14 13 41 41 H 0.97011 * 119.99958 * 94.84340 * 18 16 15 42 42 H 0.96999 * 120.00431 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.58861 * 6.60251 * 27 12 10 44 44 H 1.08996 * 109.58519 * 246.32142 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3740 2.1476 -0.0526 5 8 3.0044 1.3489 -1.0942 6 6 4.0002 2.3277 -0.7525 7 6 4.0582 2.4045 0.7855 8 6 2.9647 1.4150 1.2563 9 1 3.3985 0.4478 1.5104 10 6 2.1949 1.9793 2.4226 11 8 1.0026 2.1776 2.3232 12 7 2.8316 2.2635 3.5760 13 6 4.2752 2.0251 3.7135 14 6 4.5190 1.1593 4.9536 15 6 3.8732 1.8254 6.1708 16 6 2.3630 1.9395 5.9505 17 1 1.9423 0.9469 5.7895 18 7 1.7417 2.5485 7.1292 19 6 1.3907 1.7682 8.1985 20 1 1.5724 0.7039 8.1730 21 6 0.8016 2.3452 9.3150 22 7 0.4647 1.5954 10.3429 23 14 0.4866 4.1861 9.3588 24 1 -0.8625 4.4707 8.8074 25 1 0.5598 4.6675 10.7617 26 1 1.5124 4.8833 8.5421 27 6 2.0946 2.8135 4.7219 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.7213 3.2987 -1.1618 32 1 4.9700 2.0224 -1.1453 33 1 3.8309 3.4147 1.1259 34 1 5.0377 2.0906 1.1464 35 1 4.7917 2.9783 3.8260 36 1 4.6486 1.5094 2.8288 37 1 5.5912 1.0573 5.1210 38 1 4.0785 0.1740 4.8017 39 1 4.2964 2.8205 6.3073 40 1 4.0662 1.2237 7.0589 41 1 1.5787 3.5045 7.1522 42 1 0.0527 1.9986 11.1230 43 1 1.0270 2.8170 4.5022 44 1 2.4306 3.8317 4.9178 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000237389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:01 Heat of formation + Delta-G solvation = -41.471147 kcal Electronic energy + Delta-G solvation = -24564.737887 eV Core-core repulsion = 21097.046213 eV Total energy + Delta-G solvation = -3467.691674 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85618 -39.06302 -37.35384 -34.79208 -33.97852 -32.85304 -32.00122 -31.39253 -29.09843 -28.56951 -25.56192 -24.11032 -23.01438 -22.47154 -21.82816 -20.34970 -20.02082 -19.11403 -17.68165 -17.29279 -16.58190 -16.29670 -15.86784 -15.19961 -14.81090 -14.58948 -14.22377 -14.02243 -13.88150 -13.80803 -13.62563 -13.22826 -12.96099 -12.77182 -12.65749 -12.41191 -12.05224 -11.78484 -11.37683 -11.30352 -11.12990 -11.09534 -11.03693 -10.72847 -10.55121 -10.44774 -10.12907 -10.00126 -9.76239 -9.62708 -9.50653 -8.97264 -8.54508 -7.33343 -5.80668 -3.17603 2.06395 2.57388 2.91608 3.35100 3.38537 3.43593 3.71179 4.13622 4.32807 4.42114 4.55788 4.60999 4.79421 4.85988 4.87713 5.04436 5.08177 5.14745 5.20500 5.31431 5.36386 5.39080 5.44815 5.48923 5.56317 5.61925 5.65992 5.67937 5.80148 5.86959 5.98212 6.05580 6.25927 6.39089 6.46168 6.51495 6.53493 6.70098 6.74486 6.89797 7.42010 7.93772 8.15555 8.37613 9.15038 9.87427 10.06046 11.37413 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.003758 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.622712 B = 7448.774521 C = 7900.108390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.159 4.159 3 C 0.128 3.872 4 H 0.086 0.914 5 O -0.370 6.370 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.136 4.136 9 H 0.113 0.887 10 C 0.525 3.475 11 O -0.534 6.534 12 N -0.602 5.602 13 C 0.103 3.897 14 C -0.134 4.134 15 C -0.138 4.138 16 C 0.173 3.827 17 H 0.059 0.941 18 N -0.745 5.745 19 C -0.245 4.245 20 H 0.090 0.910 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.103 3.897 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.094 0.906 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.478 0.714 -21.902 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.177 4.177 3 C 0.070 3.930 4 H 0.104 0.896 5 O -0.289 6.289 6 C -0.029 4.029 7 C -0.186 4.186 8 C -0.158 4.158 9 H 0.131 0.869 10 C 0.312 3.688 11 O -0.411 6.411 12 N -0.335 5.335 13 C -0.020 4.020 14 C -0.173 4.173 15 C -0.178 4.178 16 C 0.063 3.937 17 H 0.077 0.923 18 N -0.388 5.388 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.020 4.020 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.763 0.517 -21.964 24.041 hybrid contribution -0.012 1.402 0.627 1.536 sum 9.750 1.919 -21.336 23.537 Atomic orbital electron populations 1.23917 0.95730 1.02380 0.96877 1.22522 0.95747 0.96702 1.02749 1.21979 0.90376 0.97284 0.83339 0.89590 1.88928 1.38510 1.60255 1.41214 1.23147 0.92946 0.92953 0.93881 1.23091 0.99073 1.00158 0.96313 1.22862 0.96964 1.01117 0.94835 0.86895 1.20117 0.87498 0.77922 0.83270 1.90707 1.14820 1.53149 1.82435 1.48045 1.09213 1.63545 1.12723 1.21939 0.80579 1.00152 0.99320 1.21941 1.00867 0.99336 0.95162 1.22248 0.98077 1.00453 0.97030 1.20436 0.91514 0.96147 0.85637 0.92312 1.42672 1.73871 1.06472 1.15745 1.19027 1.33161 0.92822 0.92438 0.89172 1.24659 1.00671 0.97288 0.96271 1.69695 1.47361 1.34330 1.06589 0.86563 0.78272 0.86880 0.76876 1.20950 1.21688 1.20347 1.21998 0.98168 0.96778 0.85030 0.87894 0.88001 0.86868 0.92089 0.89424 0.89953 0.89195 0.91342 0.89896 0.91111 0.91634 0.92578 0.91035 0.80596 0.92980 0.88785 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 14.33 29.01 0.42 -1.27 16 2 C -0.16 -1.80 9.24 -36.03 -0.33 -2.13 16 3 C 0.13 1.47 2.73 -26.83 -0.07 1.40 16 4 H 0.09 1.10 7.25 -51.93 -0.38 0.73 16 5 O -0.37 -4.13 11.21 -35.23 -0.39 -4.53 16 6 C 0.05 0.38 7.70 37.73 0.29 0.67 16 7 C -0.15 -1.14 5.23 -25.20 -0.13 -1.27 16 8 C -0.14 -1.42 1.97 -89.76 -0.18 -1.59 16 9 H 0.11 1.06 7.72 -51.93 -0.40 0.66 16 10 C 0.52 7.29 6.99 -10.98 -0.08 7.21 16 11 O -0.53 -9.35 15.21 5.56 0.08 -9.26 16 12 N -0.60 -8.05 2.98 -172.77 -0.51 -8.57 16 13 C 0.10 1.04 5.66 -3.69 -0.02 1.02 16 14 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 15 C -0.14 -2.19 5.47 -26.69 -0.15 -2.34 16 16 C 0.17 3.25 2.92 -67.83 -0.20 3.05 16 17 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 18 N -0.75 -17.30 4.93 -53.33 -0.26 -17.56 16 19 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.21 5.50 -17.44 -0.10 0.11 16 22 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 23 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 27 C 0.10 1.68 5.90 -3.73 -0.02 1.66 16 28 H 0.10 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.10 1.18 7.87 -52.48 -0.41 0.76 16 30 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 34 H 0.09 0.49 6.87 -51.93 -0.36 0.14 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.63 4.44 -51.93 -0.23 0.40 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.36 8.24 5.66 -40.82 -0.23 8.00 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.09 1.74 7.01 -51.93 -0.36 1.37 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -33.02 347.26 -7.70 -40.72 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.02 Total: 7.26 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.89 Total: -2.18 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.00 Total: -54.47 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.31 Total: -13.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.02 -7.70 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000237389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.754 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds