Wall clock time and date at job start Tue Mar 31 2020 07:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00211 * 2 1 4 4 H 1.09003 * 110.67123 * 357.04266 * 3 2 1 5 5 O 1.44371 * 110.61957 * 234.07374 * 3 2 1 6 6 C 1.43750 * 106.97566 * 201.43744 * 5 3 2 7 7 C 1.54098 * 107.29191 * 26.51445 * 6 5 3 8 8 C 1.54810 * 104.18940 * 357.96914 * 7 6 5 9 9 H 1.09006 * 110.91035 * 97.34971 * 8 7 6 10 10 C 1.50701 * 110.90966 * 220.92234 * 8 7 6 11 11 O 1.21276 * 120.00166 * 118.54509 * 10 8 7 12 12 N 1.34780 * 119.99585 * 298.54464 * 10 8 7 13 13 C 1.46957 * 120.65462 * 359.81587 * 12 10 8 14 14 C 1.53197 * 108.89063 * 233.53473 * 13 12 10 15 15 C 1.53040 * 109.31110 * 305.44560 * 14 13 12 16 16 C 1.53044 * 109.53662 * 61.36306 * 15 14 13 17 17 H 1.09001 * 109.52587 * 58.60428 * 16 15 14 18 18 N 1.46499 * 109.49460 * 178.68139 * 16 15 14 19 19 C 1.36941 * 120.00314 * 274.83576 * 18 16 15 20 20 H 1.07999 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00047 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00132 * 180.02562 * 21 19 18 23 23 Si 1.86809 * 120.00362 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47104 * 89.99513 * 23 21 19 25 25 H 1.48495 * 109.47117 * 210.00143 * 23 21 19 26 26 H 1.48500 * 109.46913 * 329.99840 * 23 21 19 27 27 C 1.46926 * 120.62730 * 180.02562 * 12 10 8 28 28 H 1.07998 * 120.00184 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99744 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99992 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.87747 * 267.09251 * 6 5 3 32 32 H 1.08999 * 109.87354 * 145.94193 * 6 5 3 33 33 H 1.09002 * 110.49056 * 239.29131 * 7 6 5 34 34 H 1.09001 * 110.48387 * 116.64463 * 7 6 5 35 35 H 1.09001 * 109.46843 * 113.75468 * 13 12 10 36 36 H 1.08997 * 109.71602 * 353.46961 * 13 12 10 37 37 H 1.08995 * 109.50005 * 185.49506 * 14 13 12 38 38 H 1.08996 * 109.49270 * 65.39471 * 14 13 12 39 39 H 1.08994 * 109.45892 * 301.34445 * 15 14 13 40 40 H 1.09001 * 109.45142 * 181.37673 * 15 14 13 41 41 H 0.97011 * 119.99958 * 94.84340 * 18 16 15 42 42 H 0.96999 * 120.00431 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.58861 * 6.60251 * 27 12 10 44 44 H 1.08996 * 109.58519 * 246.32142 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3740 2.1476 -0.0526 5 8 3.0044 1.3489 -1.0942 6 6 4.0002 2.3277 -0.7525 7 6 4.0582 2.4045 0.7855 8 6 2.9647 1.4150 1.2563 9 1 3.3985 0.4478 1.5104 10 6 2.1949 1.9793 2.4226 11 8 1.0026 2.1776 2.3232 12 7 2.8316 2.2635 3.5760 13 6 4.2752 2.0251 3.7135 14 6 4.5190 1.1593 4.9536 15 6 3.8732 1.8254 6.1708 16 6 2.3630 1.9395 5.9505 17 1 1.9423 0.9469 5.7895 18 7 1.7417 2.5485 7.1292 19 6 1.3907 1.7682 8.1985 20 1 1.5724 0.7039 8.1730 21 6 0.8016 2.3452 9.3150 22 7 0.4647 1.5954 10.3429 23 14 0.4866 4.1861 9.3588 24 1 -0.8625 4.4707 8.8074 25 1 0.5598 4.6675 10.7617 26 1 1.5124 4.8833 8.5421 27 6 2.0946 2.8135 4.7219 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.7213 3.2987 -1.1618 32 1 4.9700 2.0224 -1.1453 33 1 3.8309 3.4147 1.1259 34 1 5.0377 2.0906 1.1464 35 1 4.7917 2.9783 3.8260 36 1 4.6486 1.5094 2.8288 37 1 5.5912 1.0573 5.1210 38 1 4.0785 0.1740 4.8017 39 1 4.2964 2.8205 6.3073 40 1 4.0662 1.2237 7.0589 41 1 1.5787 3.5045 7.1522 42 1 0.0527 1.9986 11.1230 43 1 1.0270 2.8170 4.5022 44 1 2.4306 3.8317 4.9178 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000237389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:01 Heat of formation + Delta-G solvation = -64.534609 kcal Electronic energy + Delta-G solvation = -24565.737994 eV Core-core repulsion = 21097.046213 eV Total energy + Delta-G solvation = -3468.691781 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82559 -40.03426 -38.60716 -36.39013 -34.81540 -34.21425 -33.15447 -32.93890 -30.50486 -29.49117 -26.66241 -25.73949 -24.12429 -23.47958 -22.91884 -21.53320 -21.06476 -20.29008 -19.57573 -18.26114 -17.48451 -17.28177 -16.76216 -16.65368 -16.18197 -15.79626 -15.46673 -15.33896 -15.14103 -14.69490 -14.62636 -14.59301 -14.16909 -14.11460 -13.90007 -13.58066 -13.05306 -12.96347 -12.85938 -12.55975 -12.34663 -12.22351 -12.05843 -11.91251 -11.89052 -11.84220 -11.76722 -11.62675 -10.98000 -10.86884 -10.70940 -10.38032 -9.72728 -9.33784 -8.05349 -5.40200 1.20714 1.35632 1.40209 1.46601 1.52122 1.85756 2.46030 2.93154 3.25713 3.38485 3.51257 3.55801 3.63864 3.88732 3.96611 4.05260 4.08270 4.13318 4.19079 4.25068 4.28017 4.32737 4.40957 4.57539 4.71300 4.74200 4.78514 4.82255 4.85242 4.91256 4.99423 5.02519 5.06401 5.14619 5.38530 5.43775 5.51821 5.59820 5.73344 5.73766 5.90441 6.17842 6.38002 7.02895 7.09039 7.77588 7.97374 9.16125 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.003758 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.622712 B = 7448.774521 C = 7900.108390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.167 4.167 3 C 0.126 3.874 4 H 0.063 0.937 5 O -0.385 6.385 6 C 0.041 3.959 7 C -0.141 4.141 8 C -0.129 4.129 9 H 0.132 0.868 10 C 0.520 3.480 11 O -0.579 6.579 12 N -0.600 5.600 13 C 0.101 3.899 14 C -0.127 4.127 15 C -0.130 4.130 16 C 0.169 3.831 17 H 0.029 0.971 18 N -0.750 5.750 19 C -0.231 4.231 20 H 0.053 0.947 21 C -0.061 4.061 22 N -0.984 5.984 23 Si 0.955 3.045 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.247 1.247 27 C 0.115 3.885 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.366 0.634 42 H 0.259 0.741 43 H 0.065 0.935 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.517 2.063 -24.012 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.185 4.185 3 C 0.068 3.932 4 H 0.081 0.919 5 O -0.304 6.304 6 C -0.036 4.036 7 C -0.178 4.178 8 C -0.150 4.150 9 H 0.150 0.850 10 C 0.309 3.691 11 O -0.459 6.459 12 N -0.333 5.333 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.170 4.170 16 C 0.060 3.940 17 H 0.047 0.953 18 N -0.393 5.393 19 C -0.362 4.362 20 H 0.071 0.929 21 C -0.253 4.253 22 N -0.634 5.634 23 Si 0.782 3.218 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.171 1.171 27 C -0.009 4.009 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.147 0.853 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.871 1.868 -24.139 27.420 hybrid contribution -0.954 0.880 1.220 1.781 sum 11.917 2.748 -22.919 25.978 Atomic orbital electron populations 1.24035 0.96091 1.02567 0.97327 1.22763 0.95933 0.97417 1.02390 1.21862 0.90552 0.96459 0.84318 0.91910 1.88917 1.39047 1.61209 1.41266 1.23399 0.93252 0.92617 0.94299 1.23152 0.99476 0.99298 0.95909 1.22848 0.97163 1.02507 0.92508 0.85036 1.20786 0.87186 0.77066 0.84046 1.90694 1.17045 1.54924 1.83246 1.48114 1.10570 1.63055 1.11531 1.22264 0.78358 1.01554 0.99848 1.21912 1.02331 0.98655 0.93628 1.22066 0.95673 1.01097 0.98172 1.20609 0.93159 0.94942 0.85265 0.95302 1.42645 1.74437 1.06376 1.15862 1.18940 1.31782 0.91744 0.93699 0.92870 1.25493 1.01262 1.02600 0.95947 1.69879 1.49261 1.36697 1.07544 0.85418 0.78717 0.80715 0.76979 1.20858 1.22027 1.17149 1.21610 0.97272 0.97071 0.84953 0.86342 0.89337 0.85337 0.91862 0.86843 0.90088 0.85696 0.88855 0.86356 0.87735 0.92483 0.91440 0.94066 0.80033 0.93262 0.91612 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 14.33 67.78 0.97 -2.69 16 2 C -0.17 -3.66 9.24 25.64 0.24 -3.42 16 3 C 0.13 2.76 2.73 30.53 0.08 2.84 16 4 H 0.06 1.65 7.25 -2.39 -0.02 1.63 16 5 O -0.38 -7.76 11.21 -148.98 -1.67 -9.43 16 6 C 0.04 0.50 7.70 72.35 0.56 1.06 16 7 C -0.14 -1.54 5.23 31.58 0.17 -1.37 16 8 C -0.13 -2.32 1.97 -10.24 -0.02 -2.34 16 9 H 0.13 1.92 7.72 -2.38 -0.02 1.90 16 10 C 0.52 13.70 6.99 87.66 0.61 14.31 16 11 O -0.58 -20.57 15.21 -3.02 -0.05 -20.62 16 12 N -0.60 -14.67 2.98 -818.91 -2.44 -17.11 16 13 C 0.10 1.56 5.66 86.36 0.49 2.05 16 14 C -0.13 -2.50 6.08 30.67 0.19 -2.32 16 15 C -0.13 -3.95 5.47 30.62 0.17 -3.79 16 16 C 0.17 6.36 2.92 45.06 0.13 6.49 16 17 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 18 N -0.75 -35.00 4.93 -322.64 -1.59 -36.59 16 19 C -0.23 -13.27 10.41 84.03 0.88 -12.39 16 20 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 21 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 22 N -0.98 -63.56 13.97 21.65 0.30 -63.26 16 23 Si 0.95 45.59 27.74 68.60 1.90 47.50 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 27 C 0.11 3.65 5.90 86.35 0.51 4.16 16 28 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.09 2.18 7.87 -2.91 -0.02 2.16 16 30 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.96 7.85 -2.39 -0.02 0.94 16 34 H 0.12 0.53 6.87 -2.39 -0.02 0.51 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.12 1.06 4.44 -2.39 -0.01 1.05 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.37 16.27 5.66 -92.70 -0.52 15.74 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.07 2.47 7.01 -2.39 -0.02 2.45 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -76.78 347.26 2.29 -74.49 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.40 Total: 25.63 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 5.43 Total: -0.61 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -3.73 Total: -116.96 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.72 Total: -30.05 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.50 kcal Total: -76.78 2.29 -74.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000237389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.952 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds