Wall clock time and date at job start Tue Mar 31 2020 07:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 119.99895 * 2 1 4 4 H 1.08998 * 109.87053 * 358.99114 * 3 2 1 5 5 O 1.43746 * 110.00223 * 237.90690 * 3 2 1 6 6 C 1.44376 * 106.97799 * 267.01807 * 5 3 2 7 7 C 1.55000 * 103.48954 * 319.93874 * 6 5 3 8 8 C 1.54096 * 109.88010 * 120.00253 * 3 2 1 9 9 H 1.08999 * 110.49043 * 358.73521 * 8 3 2 10 10 C 1.50704 * 110.48609 * 236.22171 * 8 3 2 11 11 O 1.21277 * 120.00074 * 359.97438 * 10 8 3 12 12 N 1.34779 * 120.00210 * 180.02562 * 10 8 3 13 13 C 1.46931 * 120.62679 * 0.02562 * 12 10 8 14 14 C 1.53195 * 108.77307 * 126.37366 * 13 12 10 15 15 C 1.53036 * 109.31139 * 54.63314 * 14 13 12 16 16 C 1.53036 * 109.54438 * 298.63543 * 15 14 13 17 17 H 1.09005 * 109.52263 * 301.40342 * 16 15 14 18 18 N 1.46499 * 109.50545 * 181.31785 * 16 15 14 19 19 C 1.36935 * 119.99942 * 85.15814 * 18 16 15 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99548 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99577 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00184 * 23 21 19 27 27 C 1.46921 * 120.63174 * 180.02562 * 12 10 8 28 28 H 1.08006 * 119.99604 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00457 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00473 * 179.97438 * 2 1 3 31 31 H 1.08996 * 110.62111 * 78.43967 * 6 5 3 32 32 H 1.09004 * 110.61931 * 201.44235 * 6 5 3 33 33 H 1.09004 * 110.90769 * 278.82892 * 7 6 5 34 34 H 1.08995 * 110.90982 * 155.21898 * 7 6 5 35 35 H 1.08997 * 109.58833 * 246.15833 * 13 12 10 36 36 H 1.08994 * 109.58821 * 6.58861 * 13 12 10 37 37 H 1.08997 * 109.49762 * 174.58557 * 14 13 12 38 38 H 1.08998 * 109.49572 * 294.65157 * 14 13 12 39 39 H 1.09002 * 109.46038 * 178.61199 * 15 14 13 40 40 H 1.09001 * 109.46068 * 58.66021 * 15 14 13 41 41 H 0.96999 * 119.99980 * 265.16883 * 18 16 15 42 42 H 0.97000 * 120.00284 * 359.97438 * 22 21 19 43 43 H 1.09005 * 109.58925 * 113.84286 * 27 12 10 44 44 H 1.08994 * 109.70462 * 353.48184 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9308 1.3722 -1.1443 6 6 4.2193 0.8727 -0.7265 7 6 4.3942 1.4673 0.6942 8 6 2.9530 1.3967 1.2550 9 1 2.8267 0.5109 1.8776 10 6 2.6308 2.6420 2.0401 11 8 1.7705 3.4010 1.6471 12 7 3.2996 2.9128 3.1785 13 6 4.3457 2.0038 3.6664 14 6 5.6300 2.8072 3.8945 15 6 5.3326 3.9823 4.8286 16 6 4.2961 4.9025 4.1798 17 1 4.6755 5.2609 3.2229 18 7 4.0354 6.0436 5.0609 19 6 4.8464 7.1458 5.0118 20 1 5.6780 7.1741 4.3232 21 6 4.5997 8.2267 5.8470 22 7 3.5859 8.1924 6.6857 23 14 5.7056 9.7306 5.7794 24 1 5.2331 10.7371 6.7639 25 1 7.0992 9.3354 6.1065 26 1 5.6640 10.3148 4.4148 27 6 2.9965 4.1226 3.9551 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.2150 -0.2166 -0.6888 32 1 5.0044 1.2316 -1.3921 33 1 4.7419 2.4992 0.6439 34 1 5.0737 0.8579 1.2900 35 1 4.0271 1.5501 4.6048 36 1 4.5284 1.2256 2.9254 37 1 6.3855 2.1649 4.3470 38 1 5.9974 3.1844 2.9402 39 1 6.2501 4.5414 5.0123 40 1 4.9423 3.6051 5.7739 41 1 3.2884 6.0182 5.6791 42 1 3.0110 7.4119 6.7199 43 1 2.5679 3.8415 4.9171 44 1 2.2879 4.7434 3.4068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000237390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:05 Heat of formation + Delta-G solvation = -44.802374 kcal Electronic energy + Delta-G solvation = -24569.640752 eV Core-core repulsion = 21101.804625 eV Total energy + Delta-G solvation = -3467.836127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91630 -39.05873 -37.33090 -34.85514 -33.97038 -32.90509 -32.05977 -31.18956 -28.89654 -28.02892 -25.55856 -24.01210 -23.21254 -22.30216 -22.19634 -20.38101 -20.05820 -18.84758 -17.50737 -17.34612 -16.82164 -16.14116 -15.69390 -15.50262 -14.82093 -14.64509 -14.30849 -14.00427 -13.88790 -13.62329 -13.49348 -13.32781 -13.17617 -12.83866 -12.48650 -12.20101 -11.96607 -11.73576 -11.55586 -11.27227 -11.15886 -10.96904 -10.82877 -10.57891 -10.44517 -10.34216 -10.00163 -9.95078 -9.84458 -9.59170 -9.23445 -8.94614 -8.51623 -7.08975 -6.12700 -3.13742 1.92692 2.58401 2.94566 3.50825 3.54527 3.71830 3.76710 4.17645 4.26183 4.39197 4.64366 4.73145 4.79762 4.85715 4.88789 4.94743 5.03561 5.17216 5.21347 5.32059 5.41645 5.42264 5.49897 5.56207 5.58638 5.67428 5.68171 5.69053 5.81803 5.90615 6.02542 6.09726 6.26645 6.29794 6.42081 6.47982 6.56599 6.63593 6.76334 6.92513 7.44450 7.77691 8.16668 8.72496 9.17926 10.04301 10.18130 11.35437 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.003472 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.826121 B = 8062.855862 C = 8272.438526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.121 0.879 5 O -0.361 6.361 6 C 0.045 3.955 7 C -0.146 4.146 8 C -0.135 4.135 9 H 0.109 0.891 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.601 5.601 13 C 0.101 3.899 14 C -0.133 4.133 15 C -0.137 4.137 16 C 0.174 3.826 17 H 0.051 0.949 18 N -0.733 5.733 19 C -0.332 4.332 20 H 0.065 0.935 21 C -0.043 4.043 22 N -0.942 5.942 23 Si 1.080 2.920 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 C 0.105 3.895 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.367 0.633 42 H 0.255 0.745 43 H 0.063 0.937 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -21.093 -10.905 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.054 3.946 4 H 0.139 0.861 5 O -0.280 6.280 6 C -0.032 4.032 7 C -0.184 4.184 8 C -0.157 4.157 9 H 0.127 0.873 10 C 0.309 3.691 11 O -0.414 6.414 12 N -0.334 5.334 13 C -0.022 4.022 14 C -0.172 4.172 15 C -0.177 4.177 16 C 0.063 3.937 17 H 0.069 0.931 18 N -0.375 5.375 19 C -0.462 4.462 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.587 5.587 23 Si 0.911 3.089 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.222 1.222 27 C -0.018 4.018 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.200 0.800 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.351 -19.028 -10.807 21.924 hybrid contribution -0.240 -1.828 -0.056 1.845 sum 1.111 -20.856 -10.863 23.542 Atomic orbital electron populations 1.23942 0.95835 1.02323 0.98257 1.23273 0.96472 0.98245 1.01705 1.21902 0.92290 0.96870 0.83536 0.86106 1.88992 1.21277 1.84802 1.32924 1.23586 0.86681 0.98214 0.94671 1.23279 0.94587 1.03613 0.96899 1.22665 0.97006 0.98076 0.97919 0.87260 1.20190 0.81389 0.86939 0.80545 1.90688 1.32720 1.49781 1.68170 1.48018 1.37270 1.24316 1.23760 1.21938 0.88030 0.92278 0.99937 1.21929 0.96108 0.98139 1.00986 1.22259 1.01615 0.95732 0.98115 1.20410 0.91641 0.87487 0.94128 0.93110 1.42318 1.35266 1.15187 1.44710 1.20000 1.09466 0.95652 1.21123 0.91746 1.25783 1.01219 1.01177 0.95902 1.70883 1.17640 1.31715 1.38472 0.83246 0.74369 0.75604 0.75728 1.20995 1.22266 1.22204 1.22024 0.99298 0.85252 0.95212 0.88082 0.88004 0.87246 0.91950 0.88557 0.89526 0.88999 0.91374 0.89819 0.91213 0.91767 0.91468 0.92621 0.79954 0.93365 0.91835 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.32 29.02 0.42 -1.11 16 2 C -0.18 -1.73 8.88 -36.02 -0.32 -2.05 16 3 C 0.11 1.33 3.44 -27.31 -0.09 1.24 16 4 H 0.12 1.75 6.11 -51.93 -0.32 1.44 16 5 O -0.36 -4.51 11.18 -35.23 -0.39 -4.90 16 6 C 0.05 0.39 7.66 38.21 0.29 0.68 16 7 C -0.15 -1.28 5.49 -24.72 -0.14 -1.42 16 8 C -0.14 -1.45 2.10 -90.24 -0.19 -1.64 16 9 H 0.11 0.93 7.40 -51.93 -0.38 0.54 16 10 C 0.52 7.75 6.95 -10.98 -0.08 7.68 16 11 O -0.54 -10.14 14.67 5.56 0.08 -10.05 16 12 N -0.60 -8.60 2.97 -172.75 -0.51 -9.11 16 13 C 0.10 1.08 6.00 -3.71 -0.02 1.06 16 14 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 15 C -0.14 -2.29 5.47 -26.69 -0.15 -2.43 16 16 C 0.17 3.47 2.92 -67.80 -0.20 3.27 16 17 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 18 N -0.73 -18.24 5.12 -53.29 -0.27 -18.52 16 19 C -0.33 -9.29 9.93 -15.06 -0.15 -9.44 16 20 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 22 N -0.94 -29.13 13.70 55.49 0.76 -28.37 16 23 Si 1.08 25.97 29.92 -169.99 -5.09 20.89 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.10 1.85 5.90 -3.70 -0.02 1.83 16 28 H 0.10 0.72 8.06 -52.48 -0.42 0.30 16 29 H 0.10 0.99 7.85 -52.49 -0.41 0.58 16 30 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.09 0.56 6.77 -51.93 -0.35 0.20 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.66 4.09 -51.93 -0.21 0.45 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.37 9.41 6.63 -40.82 -0.27 9.14 16 42 H 0.26 7.75 6.77 -40.82 -0.28 7.48 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.87 7.01 -51.93 -0.36 1.50 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -33.82 347.18 -7.95 -41.76 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.85 Total: 8.50 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.90 Total: -5.43 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.03 Total: -55.99 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.31 Total: -14.95 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.09 Total: 20.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.82 -7.95 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000237390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds