Wall clock time and date at job start Tue Mar 31 2020 07:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 119.99895 * 2 1 4 4 H 1.08998 * 109.87053 * 358.99114 * 3 2 1 5 5 O 1.43746 * 110.00223 * 237.90690 * 3 2 1 6 6 C 1.44376 * 106.97799 * 267.01807 * 5 3 2 7 7 C 1.55000 * 103.48954 * 319.93874 * 6 5 3 8 8 C 1.54096 * 109.88010 * 120.00253 * 3 2 1 9 9 H 1.08999 * 110.49043 * 358.73521 * 8 3 2 10 10 C 1.50704 * 110.48609 * 236.22171 * 8 3 2 11 11 O 1.21277 * 120.00074 * 359.97438 * 10 8 3 12 12 N 1.34779 * 120.00210 * 180.02562 * 10 8 3 13 13 C 1.46931 * 120.62679 * 0.02562 * 12 10 8 14 14 C 1.53195 * 108.77307 * 126.37366 * 13 12 10 15 15 C 1.53036 * 109.31139 * 54.63314 * 14 13 12 16 16 C 1.53036 * 109.54438 * 298.63543 * 15 14 13 17 17 H 1.09005 * 109.52263 * 301.40342 * 16 15 14 18 18 N 1.46499 * 109.50545 * 181.31785 * 16 15 14 19 19 C 1.36935 * 119.99942 * 85.15814 * 18 16 15 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99548 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99577 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00184 * 23 21 19 27 27 C 1.46921 * 120.63174 * 180.02562 * 12 10 8 28 28 H 1.08006 * 119.99604 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00457 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00473 * 179.97438 * 2 1 3 31 31 H 1.08996 * 110.62111 * 78.43967 * 6 5 3 32 32 H 1.09004 * 110.61931 * 201.44235 * 6 5 3 33 33 H 1.09004 * 110.90769 * 278.82892 * 7 6 5 34 34 H 1.08995 * 110.90982 * 155.21898 * 7 6 5 35 35 H 1.08997 * 109.58833 * 246.15833 * 13 12 10 36 36 H 1.08994 * 109.58821 * 6.58861 * 13 12 10 37 37 H 1.08997 * 109.49762 * 174.58557 * 14 13 12 38 38 H 1.08998 * 109.49572 * 294.65157 * 14 13 12 39 39 H 1.09002 * 109.46038 * 178.61199 * 15 14 13 40 40 H 1.09001 * 109.46068 * 58.66021 * 15 14 13 41 41 H 0.96999 * 119.99980 * 265.16883 * 18 16 15 42 42 H 0.97000 * 120.00284 * 359.97438 * 22 21 19 43 43 H 1.09005 * 109.58925 * 113.84286 * 27 12 10 44 44 H 1.08994 * 109.70462 * 353.48184 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9308 1.3722 -1.1443 6 6 4.2193 0.8727 -0.7265 7 6 4.3942 1.4673 0.6942 8 6 2.9530 1.3967 1.2550 9 1 2.8267 0.5109 1.8776 10 6 2.6308 2.6420 2.0401 11 8 1.7705 3.4010 1.6471 12 7 3.2996 2.9128 3.1785 13 6 4.3457 2.0038 3.6664 14 6 5.6300 2.8072 3.8945 15 6 5.3326 3.9823 4.8286 16 6 4.2961 4.9025 4.1798 17 1 4.6755 5.2609 3.2229 18 7 4.0354 6.0436 5.0609 19 6 4.8464 7.1458 5.0118 20 1 5.6780 7.1741 4.3232 21 6 4.5997 8.2267 5.8470 22 7 3.5859 8.1924 6.6857 23 14 5.7056 9.7306 5.7794 24 1 5.2331 10.7371 6.7639 25 1 7.0992 9.3354 6.1065 26 1 5.6640 10.3148 4.4148 27 6 2.9965 4.1226 3.9551 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 4.2150 -0.2166 -0.6888 32 1 5.0044 1.2316 -1.3921 33 1 4.7419 2.4992 0.6439 34 1 5.0737 0.8579 1.2900 35 1 4.0271 1.5501 4.6048 36 1 4.5284 1.2256 2.9254 37 1 6.3855 2.1649 4.3470 38 1 5.9974 3.1844 2.9402 39 1 6.2501 4.5414 5.0123 40 1 4.9423 3.6051 5.7739 41 1 3.2884 6.0182 5.6791 42 1 3.0110 7.4119 6.7199 43 1 2.5679 3.8415 4.9171 44 1 2.2879 4.7434 3.4068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000237390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:04 Heat of formation + Delta-G solvation = -68.496197 kcal Electronic energy + Delta-G solvation = -24570.668193 eV Core-core repulsion = 21101.804625 eV Total energy + Delta-G solvation = -3468.863568 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95341 -40.10341 -38.68045 -36.58289 -34.70888 -34.30165 -33.16500 -32.71709 -29.99345 -29.41586 -26.74429 -25.80986 -24.34605 -23.56430 -23.10191 -21.64774 -20.93779 -20.07493 -19.35151 -18.50240 -17.71660 -17.17758 -16.91397 -16.73132 -16.11772 -15.93971 -15.66097 -15.43262 -15.16639 -14.89995 -14.71443 -14.58528 -14.19061 -13.88106 -13.66770 -13.18693 -13.06626 -12.81414 -12.76494 -12.52446 -12.34184 -12.28718 -11.99809 -11.97284 -11.92096 -11.87406 -11.67398 -11.35848 -10.94338 -10.93126 -10.70236 -10.40351 -9.79700 -9.17542 -8.43521 -5.38397 1.21111 1.43977 1.55539 1.65743 1.79302 1.82577 2.68640 3.00057 3.31377 3.36159 3.39657 3.58898 3.65246 3.86811 3.90418 4.02638 4.07107 4.13214 4.17173 4.19906 4.22532 4.24811 4.47613 4.51425 4.66787 4.68225 4.72205 4.77987 4.82524 4.87547 4.97088 5.01085 5.02097 5.09360 5.31286 5.36811 5.45318 5.56922 5.57826 5.78237 5.88922 6.31361 6.44885 6.99559 7.04556 7.92714 8.03728 9.08175 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.003472 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.826121 B = 8062.855862 C = 8272.438526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.179 4.179 3 C 0.108 3.892 4 H 0.080 0.920 5 O -0.392 6.392 6 C 0.041 3.959 7 C -0.142 4.142 8 C -0.124 4.124 9 H 0.146 0.854 10 C 0.514 3.486 11 O -0.590 6.590 12 N -0.599 5.599 13 C 0.097 3.903 14 C -0.123 4.123 15 C -0.127 4.127 16 C 0.173 3.827 17 H 0.026 0.974 18 N -0.748 5.748 19 C -0.330 4.330 20 H 0.064 0.936 21 C -0.103 4.103 22 N -0.973 5.973 23 Si 1.128 2.872 24 H -0.292 1.292 25 H -0.274 1.274 26 H -0.281 1.281 27 C 0.118 3.882 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.360 0.640 42 H 0.244 0.756 43 H 0.070 0.930 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -24.651 -11.381 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C 0.050 3.950 4 H 0.097 0.903 5 O -0.312 6.312 6 C -0.035 4.035 7 C -0.179 4.179 8 C -0.145 4.145 9 H 0.164 0.836 10 C 0.304 3.696 11 O -0.470 6.470 12 N -0.330 5.330 13 C -0.023 4.023 14 C -0.162 4.162 15 C -0.167 4.167 16 C 0.063 3.937 17 H 0.044 0.956 18 N -0.390 5.390 19 C -0.462 4.462 20 H 0.082 0.918 21 C -0.294 4.294 22 N -0.621 5.621 23 Si 0.952 3.048 24 H -0.218 1.218 25 H -0.199 1.199 26 H -0.208 1.208 27 C -0.007 4.007 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.192 0.808 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.623 -22.664 -11.312 25.588 hybrid contribution -0.960 -0.738 0.003 1.211 sum 2.663 -23.402 -11.308 26.127 Atomic orbital electron populations 1.24105 0.96093 1.02690 0.97969 1.23329 0.96470 0.98004 1.01921 1.21798 0.92207 0.96873 0.84139 0.90256 1.88959 1.23060 1.85596 1.33539 1.23865 0.85168 0.99943 0.94513 1.23342 0.93641 1.03197 0.97734 1.22716 0.98099 0.96563 0.97171 0.83639 1.21077 0.80386 0.87840 0.80337 1.90674 1.35098 1.51881 1.69382 1.48101 1.38146 1.23439 1.23355 1.22299 0.85942 0.91995 1.02095 1.21901 0.97830 0.96646 0.99813 1.22050 0.98899 0.96685 0.99108 1.20578 0.93714 0.87006 0.92356 0.95554 1.42514 1.34819 1.16258 1.45452 1.20302 1.09235 0.96487 1.20153 0.91823 1.27221 1.02061 1.04278 0.95816 1.70990 1.19054 1.31697 1.40378 0.82639 0.73732 0.72366 0.76077 1.21760 1.19939 1.20768 1.21569 0.97214 0.86444 0.95443 0.85577 0.89881 0.84251 0.88892 0.87615 0.91873 0.84796 0.89525 0.85696 0.87393 0.91817 0.93774 0.92524 0.80818 0.94569 0.91204 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 14.32 67.79 0.97 -1.96 16 2 C -0.18 -3.05 8.88 25.66 0.23 -2.83 16 3 C 0.11 2.48 3.44 30.22 0.10 2.59 16 4 H 0.08 2.47 6.11 -2.39 -0.01 2.46 16 5 O -0.39 -9.33 11.18 -148.98 -1.67 -11.00 16 6 C 0.04 0.56 7.66 72.67 0.56 1.12 16 7 C -0.14 -1.95 5.49 31.90 0.18 -1.77 16 8 C -0.12 -2.34 2.10 -10.55 -0.02 -2.36 16 9 H 0.15 1.71 7.40 -2.39 -0.02 1.70 16 10 C 0.51 15.13 6.95 87.66 0.61 15.74 16 11 O -0.59 -23.67 14.67 -3.02 -0.04 -23.72 16 12 N -0.60 -16.48 2.97 -818.84 -2.43 -18.92 16 13 C 0.10 1.68 6.00 86.36 0.52 2.20 16 14 C -0.12 -2.51 6.08 30.67 0.19 -2.33 16 15 C -0.13 -4.14 5.47 30.62 0.17 -3.97 16 16 C 0.17 7.06 2.92 45.08 0.13 7.19 16 17 H 0.03 1.19 8.08 -2.38 -0.02 1.17 16 18 N -0.75 -38.78 5.12 -322.52 -1.65 -40.43 16 19 C -0.33 -19.01 9.93 84.03 0.83 -18.18 16 20 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.10 -6.06 5.50 84.86 0.47 -5.60 16 22 N -0.97 -61.99 13.70 21.65 0.30 -61.70 16 23 Si 1.13 52.84 29.92 68.60 2.05 54.89 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 27 C 0.12 4.29 5.90 86.37 0.51 4.80 16 28 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.08 1.70 7.85 -2.91 -0.02 1.68 16 30 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 1.23 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.20 7.86 -2.38 -0.02 1.18 16 34 H 0.13 0.72 6.77 -2.39 -0.02 0.70 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.18 4.09 -2.39 -0.01 1.17 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.36 19.41 6.63 -92.71 -0.61 18.79 16 42 H 0.24 15.49 6.77 -92.71 -0.63 14.86 16 43 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 44 H 0.06 2.46 7.01 -2.39 -0.02 2.45 16 Total: -1.00 -80.12 347.18 2.51 -77.62 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.52 Total: 28.60 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.44 Total: -5.36 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.79 Total: -121.04 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.71 Total: -34.72 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 2.05 Total: 54.89 kcal Total: -80.12 2.51 -77.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000237390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.120 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds