Wall clock time and date at job start Tue Mar 31 2020 07:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99420 * 2 1 4 4 H 1.09005 * 110.67349 * 357.03298 * 3 2 1 5 5 O 1.44379 * 110.61620 * 234.06960 * 3 2 1 6 6 C 1.43741 * 106.97511 * 201.43846 * 5 3 2 7 7 C 1.54103 * 107.29194 * 26.51558 * 6 5 3 8 8 C 1.54801 * 104.18863 * 357.96731 * 7 6 5 9 9 H 1.09005 * 110.91181 * 97.35548 * 8 7 6 10 10 C 1.50704 * 110.91175 * 220.92472 * 8 7 6 11 11 O 1.21278 * 120.00499 * 118.54621 * 10 8 7 12 12 N 1.34780 * 119.99421 * 298.55050 * 10 8 7 13 13 C 1.46497 * 119.99649 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.50012 * 325.06418 * 13 12 10 15 15 C 1.53040 * 109.49928 * 204.99764 * 13 12 10 16 16 C 1.53043 * 109.54073 * 178.68513 * 15 13 12 17 17 C 1.53191 * 109.31275 * 61.36384 * 16 15 13 18 18 N 1.46924 * 108.77764 * 305.36724 * 17 16 15 19 19 C 1.36938 * 120.63197 * 233.58904 * 18 17 16 20 20 H 1.07998 * 119.99543 * 27.68331 * 19 18 17 21 21 C 1.38812 * 120.00013 * 207.68563 * 19 18 17 22 22 N 1.31621 * 119.99982 * 17.36165 * 21 19 18 23 23 Si 1.86804 * 119.99799 * 197.36735 * 21 19 18 24 24 H 1.48499 * 109.47175 * 90.00066 * 23 21 19 25 25 H 1.48499 * 109.46899 * 209.99920 * 23 21 19 26 26 H 1.48494 * 109.47098 * 329.99517 * 23 21 19 27 27 C 1.46926 * 118.74001 * 53.60564 * 18 17 16 28 28 H 1.08009 * 119.99561 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00778 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00304 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.88018 * 267.08620 * 6 5 3 32 32 H 1.09000 * 109.87923 * 145.93545 * 6 5 3 33 33 H 1.09005 * 110.48145 * 239.29286 * 7 6 5 34 34 H 1.09001 * 110.48740 * 116.64960 * 7 6 5 35 35 H 0.97003 * 120.00218 * 359.97438 * 12 10 8 36 36 H 1.08996 * 109.45929 * 298.70509 * 15 13 12 37 37 H 1.09000 * 109.45871 * 58.67779 * 15 13 12 38 38 H 1.09001 * 109.49475 * 181.31814 * 16 15 13 39 39 H 1.08999 * 109.49373 * 301.37930 * 16 15 13 40 40 H 1.08998 * 109.58627 * 65.15196 * 17 16 15 41 41 H 1.08996 * 109.58569 * 185.57656 * 17 16 15 42 42 H 0.97002 * 119.99890 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.58831 * 186.60277 * 27 18 17 44 44 H 1.09005 * 109.58563 * 66.17834 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3737 2.1477 -0.0528 5 8 3.0043 1.3491 -1.0942 6 6 4.0000 2.3279 -0.7526 7 6 4.0579 2.4048 0.7855 8 6 2.9645 1.4153 1.2563 9 1 3.3983 0.4482 1.5105 10 6 2.1945 1.9796 2.4225 11 8 1.0022 2.1778 2.3231 12 7 2.8311 2.2640 3.5759 13 6 2.0828 2.8130 4.7094 14 1 1.2962 3.4716 4.3413 15 6 3.0314 3.6052 5.6121 16 6 2.2445 4.2065 6.7790 17 6 1.6212 3.0771 7.6052 18 7 0.8222 2.2248 6.7143 19 6 -0.4896 1.9542 6.9989 20 1 -1.0747 2.6595 7.5704 21 6 -1.0674 0.7735 6.5530 22 7 -0.3048 -0.2273 6.1664 23 14 -2.9271 0.6049 6.5014 24 1 -3.4288 1.0587 5.1794 25 1 -3.3012 -0.8167 6.7114 26 1 -3.5295 1.4387 7.5723 27 6 1.4576 1.6679 5.5122 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 3.7211 3.2988 -1.1620 32 1 4.9699 2.0227 -1.1452 33 1 3.8304 3.4151 1.1257 34 1 5.0374 2.0911 1.1465 35 1 3.7848 2.1052 3.6555 36 1 3.8038 2.9406 5.9992 37 1 3.4961 4.4059 5.0368 38 1 2.9165 4.7898 7.4085 39 1 1.4565 4.8524 6.3918 40 1 2.4104 2.4841 8.0674 41 1 0.9797 3.5008 8.3778 42 1 -0.7086 -1.0526 5.8551 43 1 0.7081 1.1617 4.9039 44 1 2.2335 0.9599 5.8037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008558523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:14 Heat of formation + Delta-G solvation = -43.417110 kcal Electronic energy + Delta-G solvation = -24825.807957 eV Core-core repulsion = 21358.031899 eV Total energy + Delta-G solvation = -3467.776057 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35591 -38.66650 -37.16244 -34.22037 -33.67899 -32.82286 -32.20914 -30.03402 -29.03341 -28.24648 -25.27237 -23.82880 -22.45236 -22.14300 -21.51463 -19.99416 -19.85642 -19.23503 -17.29887 -16.76263 -16.27996 -15.73849 -15.68739 -15.07183 -14.74313 -14.20243 -13.96502 -13.71045 -13.56878 -13.51316 -13.32660 -12.99279 -12.51458 -12.39323 -12.29566 -11.89064 -11.85774 -11.56942 -11.08428 -11.01460 -10.88300 -10.74286 -10.72725 -10.49517 -10.24361 -9.98573 -9.94364 -9.84043 -9.53241 -9.41841 -9.20349 -8.54539 -8.42576 -6.66105 -5.75343 -3.18651 2.31737 2.97528 3.41076 3.45133 3.50074 3.50751 3.97266 4.38811 4.54379 4.55638 4.69873 4.97972 5.08480 5.19705 5.30915 5.34782 5.37642 5.40968 5.53174 5.53939 5.60129 5.62710 5.69463 5.75650 5.90149 6.04910 6.06845 6.12598 6.31983 6.40445 6.48494 6.68330 6.70070 6.73615 6.76246 6.92424 6.93725 6.95430 7.29371 7.72528 7.82972 7.91602 8.48027 8.62443 9.23270 9.87251 10.41884 11.32607 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.005299 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.002643 B = 5282.753147 C = 6843.454634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.160 4.160 3 C 0.129 3.871 4 H 0.086 0.914 5 O -0.372 6.372 6 C 0.049 3.951 7 C -0.147 4.147 8 C -0.138 4.138 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.526 6.526 12 N -0.719 5.719 13 C 0.117 3.883 14 H 0.081 0.919 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.142 3.858 18 N -0.589 5.589 19 C -0.258 4.258 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.167 3.833 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.253 0.747 43 H 0.095 0.905 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 5.065 -10.211 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.178 4.178 3 C 0.071 3.929 4 H 0.104 0.896 5 O -0.291 6.291 6 C -0.028 4.028 7 C -0.185 4.185 8 C -0.160 4.160 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.401 6.401 12 N -0.369 5.369 13 C 0.011 3.989 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.016 3.984 18 N -0.311 5.311 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.040 3.960 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.224 0.776 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.526 4.924 -10.495 15.658 hybrid contribution -0.280 -0.195 0.287 0.446 sum 10.246 4.729 -10.208 15.217 Atomic orbital electron populations 1.23902 0.95753 1.02353 0.96604 1.22478 0.95705 0.96612 1.02998 1.21975 0.90308 0.97309 0.83265 0.89602 1.88915 1.38554 1.60207 1.41416 1.23114 0.92874 0.92897 0.93961 1.22952 0.99123 1.00111 0.96319 1.22902 0.96834 1.01076 0.95201 0.87041 1.19997 0.87817 0.78247 0.83341 1.90747 1.14617 1.52005 1.82729 1.46069 1.11854 1.65780 1.13202 1.21975 0.93630 0.98059 0.85196 0.90065 1.21672 0.97987 0.98698 0.97006 1.22003 0.98988 0.99191 0.96903 1.20953 0.94102 0.91025 0.92336 1.43973 1.09053 1.56971 1.21148 1.19162 0.85772 1.00355 1.33407 0.91580 1.25020 0.98034 0.94737 1.01376 1.70018 1.33664 1.03270 1.47313 0.86307 0.85659 0.76809 0.78107 1.21239 1.21764 1.20410 1.21093 0.96476 0.90788 0.87648 0.87975 0.88027 0.86968 0.92222 0.89635 0.90066 0.89580 0.77552 0.92295 0.93181 0.92647 0.92142 0.96432 0.92627 0.93669 0.88668 0.96603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 14.33 29.01 0.42 -1.75 16 2 C -0.16 -2.30 9.24 -36.02 -0.33 -2.63 16 3 C 0.13 1.82 2.73 -26.83 -0.07 1.75 16 4 H 0.09 1.33 7.25 -51.93 -0.38 0.96 16 5 O -0.37 -4.94 11.21 -35.23 -0.39 -5.33 16 6 C 0.05 0.47 7.70 37.73 0.29 0.77 16 7 C -0.15 -1.41 6.55 -25.21 -0.17 -1.57 16 8 C -0.14 -1.79 2.94 -89.77 -0.26 -2.06 16 9 H 0.11 1.34 8.05 -51.93 -0.42 0.92 16 10 C 0.52 8.82 7.02 -10.98 -0.08 8.74 16 11 O -0.53 -11.29 15.46 5.56 0.09 -11.21 16 12 N -0.72 -11.32 5.03 -53.69 -0.27 -11.59 16 13 C 0.12 2.24 2.61 -67.81 -0.18 2.06 16 14 H 0.08 1.79 7.58 -51.93 -0.39 1.39 16 15 C -0.12 -1.82 5.35 -26.69 -0.14 -1.96 16 16 C -0.13 -2.19 6.08 -26.61 -0.16 -2.36 16 17 C 0.14 2.94 6.52 -3.71 -0.02 2.92 16 18 N -0.59 -14.96 3.00 -172.32 -0.52 -15.48 16 19 C -0.26 -7.25 9.59 -15.06 -0.14 -7.40 16 20 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 21 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 22 N -0.90 -26.84 11.19 55.49 0.62 -26.22 16 23 Si 0.90 22.58 29.59 -169.99 -5.03 17.55 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 27 C 0.17 4.05 4.89 -3.71 -0.02 4.04 16 28 H 0.10 1.31 8.06 -52.48 -0.42 0.88 16 29 H 0.10 1.53 7.87 -52.49 -0.41 1.11 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.39 4.79 8.60 -40.82 -0.35 4.44 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.10 2.73 6.04 -51.93 -0.31 2.42 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -33.11 353.98 -8.41 -41.52 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.28 Total: 4.76 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.96 Total: 0.67 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.17 Total: -53.29 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.31 Total: -16.54 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.11 -8.41 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008558523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.897 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds