Wall clock time and date at job start Tue Mar 31 2020 07:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99420 * 2 1 4 4 H 1.09005 * 110.67349 * 357.03298 * 3 2 1 5 5 O 1.44379 * 110.61620 * 234.06960 * 3 2 1 6 6 C 1.43741 * 106.97511 * 201.43846 * 5 3 2 7 7 C 1.54103 * 107.29194 * 26.51558 * 6 5 3 8 8 C 1.54801 * 104.18863 * 357.96731 * 7 6 5 9 9 H 1.09005 * 110.91181 * 97.35548 * 8 7 6 10 10 C 1.50704 * 110.91175 * 220.92472 * 8 7 6 11 11 O 1.21278 * 120.00499 * 118.54621 * 10 8 7 12 12 N 1.34780 * 119.99421 * 298.55050 * 10 8 7 13 13 C 1.46497 * 119.99649 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.50012 * 325.06418 * 13 12 10 15 15 C 1.53040 * 109.49928 * 204.99764 * 13 12 10 16 16 C 1.53043 * 109.54073 * 178.68513 * 15 13 12 17 17 C 1.53191 * 109.31275 * 61.36384 * 16 15 13 18 18 N 1.46924 * 108.77764 * 305.36724 * 17 16 15 19 19 C 1.36938 * 120.63197 * 233.58904 * 18 17 16 20 20 H 1.07998 * 119.99543 * 27.68331 * 19 18 17 21 21 C 1.38812 * 120.00013 * 207.68563 * 19 18 17 22 22 N 1.31621 * 119.99982 * 17.36165 * 21 19 18 23 23 Si 1.86804 * 119.99799 * 197.36735 * 21 19 18 24 24 H 1.48499 * 109.47175 * 90.00066 * 23 21 19 25 25 H 1.48499 * 109.46899 * 209.99920 * 23 21 19 26 26 H 1.48494 * 109.47098 * 329.99517 * 23 21 19 27 27 C 1.46926 * 118.74001 * 53.60564 * 18 17 16 28 28 H 1.08009 * 119.99561 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00778 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00304 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.88018 * 267.08620 * 6 5 3 32 32 H 1.09000 * 109.87923 * 145.93545 * 6 5 3 33 33 H 1.09005 * 110.48145 * 239.29286 * 7 6 5 34 34 H 1.09001 * 110.48740 * 116.64960 * 7 6 5 35 35 H 0.97003 * 120.00218 * 359.97438 * 12 10 8 36 36 H 1.08996 * 109.45929 * 298.70509 * 15 13 12 37 37 H 1.09000 * 109.45871 * 58.67779 * 15 13 12 38 38 H 1.09001 * 109.49475 * 181.31814 * 16 15 13 39 39 H 1.08999 * 109.49373 * 301.37930 * 16 15 13 40 40 H 1.08998 * 109.58627 * 65.15196 * 17 16 15 41 41 H 1.08996 * 109.58569 * 185.57656 * 17 16 15 42 42 H 0.97002 * 119.99890 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.58831 * 186.60277 * 27 18 17 44 44 H 1.09005 * 109.58563 * 66.17834 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3737 2.1477 -0.0528 5 8 3.0043 1.3491 -1.0942 6 6 4.0000 2.3279 -0.7526 7 6 4.0579 2.4048 0.7855 8 6 2.9645 1.4153 1.2563 9 1 3.3983 0.4482 1.5105 10 6 2.1945 1.9796 2.4225 11 8 1.0022 2.1778 2.3231 12 7 2.8311 2.2640 3.5759 13 6 2.0828 2.8130 4.7094 14 1 1.2962 3.4716 4.3413 15 6 3.0314 3.6052 5.6121 16 6 2.2445 4.2065 6.7790 17 6 1.6212 3.0771 7.6052 18 7 0.8222 2.2248 6.7143 19 6 -0.4896 1.9542 6.9989 20 1 -1.0747 2.6595 7.5704 21 6 -1.0674 0.7735 6.5530 22 7 -0.3048 -0.2273 6.1664 23 14 -2.9271 0.6049 6.5014 24 1 -3.4288 1.0587 5.1794 25 1 -3.3012 -0.8167 6.7114 26 1 -3.5295 1.4387 7.5723 27 6 1.4576 1.6679 5.5122 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 3.7211 3.2988 -1.1620 32 1 4.9699 2.0227 -1.1452 33 1 3.8304 3.4151 1.1257 34 1 5.0374 2.0911 1.1465 35 1 3.7848 2.1052 3.6555 36 1 3.8038 2.9406 5.9992 37 1 3.4961 4.4059 5.0368 38 1 2.9165 4.7898 7.4085 39 1 1.4565 4.8524 6.3918 40 1 2.4104 2.4841 8.0674 41 1 0.9797 3.5008 8.3778 42 1 -0.7086 -1.0526 5.8551 43 1 0.7081 1.1617 4.9039 44 1 2.2335 0.9599 5.8037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008558523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:14 Heat of formation + Delta-G solvation = -66.529884 kcal Electronic energy + Delta-G solvation = -24826.810202 eV Core-core repulsion = 21358.031899 eV Total energy + Delta-G solvation = -3468.778302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55158 -39.96106 -38.72728 -35.84609 -34.83057 -34.49320 -33.34789 -31.88904 -30.44470 -29.37805 -27.25390 -25.09877 -23.94038 -23.39578 -22.86960 -21.33258 -21.11004 -20.71822 -18.75406 -18.48942 -17.35905 -17.11589 -16.96689 -16.63425 -16.05508 -15.84126 -15.49115 -15.23709 -14.85120 -14.69560 -14.57389 -14.43947 -14.15379 -13.97797 -13.64447 -13.39387 -12.95706 -12.91518 -12.71347 -12.48494 -12.43103 -12.24637 -12.06078 -12.04553 -11.87157 -11.69295 -11.58778 -11.26837 -10.86500 -10.69992 -10.57910 -10.39185 -10.07154 -8.70597 -7.90904 -5.36371 1.18226 1.38917 1.44313 1.49970 1.64560 2.14054 2.47550 2.96931 3.25148 3.45212 3.54143 3.70080 3.82117 3.95853 4.04344 4.12263 4.14393 4.22538 4.27225 4.31506 4.40241 4.48530 4.63086 4.71722 4.81732 4.82385 4.86276 4.91687 4.96796 5.06700 5.08579 5.19842 5.23024 5.33579 5.47021 5.52578 5.56332 5.60737 5.70442 5.78315 5.88325 6.34926 6.62987 7.10645 7.33809 7.84088 8.32475 9.13621 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.005299 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.002643 B = 5282.753147 C = 6843.454634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.165 4.165 3 C 0.127 3.873 4 H 0.062 0.938 5 O -0.384 6.384 6 C 0.041 3.959 7 C -0.136 4.136 8 C -0.131 4.131 9 H 0.127 0.873 10 C 0.517 3.483 11 O -0.579 6.579 12 N -0.705 5.705 13 C 0.131 3.869 14 H 0.049 0.951 15 C -0.106 4.106 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.610 5.610 19 C -0.266 4.266 20 H 0.067 0.933 21 C -0.047 4.047 22 N -0.929 5.929 23 Si 0.959 3.041 24 H -0.295 1.295 25 H -0.290 1.290 26 H -0.262 1.262 27 C 0.178 3.822 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.414 0.586 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.022 0.978 41 H 0.053 0.947 42 H 0.247 0.753 43 H 0.043 0.957 44 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.296 6.374 -10.253 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C 0.070 3.930 4 H 0.080 0.920 5 O -0.304 6.304 6 C -0.036 4.036 7 C -0.174 4.174 8 C -0.153 4.153 9 H 0.145 0.855 10 C 0.303 3.697 11 O -0.458 6.458 12 N -0.356 5.356 13 C 0.025 3.975 14 H 0.067 0.933 15 C -0.144 4.144 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.334 5.334 19 C -0.396 4.396 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.222 1.222 25 H -0.217 1.217 26 H -0.186 1.186 27 C 0.051 3.949 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 13.398 6.264 -10.520 18.150 hybrid contribution -1.122 -0.571 0.316 1.298 sum 12.276 5.693 -10.204 16.948 Atomic orbital electron populations 1.24001 0.96257 1.02392 0.97621 1.22756 0.95823 0.97581 1.02132 1.21825 0.90560 0.96213 0.84432 0.91962 1.88901 1.39040 1.61295 1.41176 1.23407 0.93213 0.92658 0.94279 1.22998 0.99313 0.99116 0.95967 1.22864 0.97174 1.02527 0.92706 0.85527 1.20749 0.87398 0.77150 0.84371 1.90733 1.17243 1.54142 1.83701 1.45859 1.12727 1.65074 1.11961 1.21479 0.94306 0.95759 0.85952 0.93273 1.21637 0.97119 0.99450 0.96173 1.21905 0.99425 0.97632 0.97193 1.21181 0.93794 0.91573 0.92448 1.44260 1.08925 1.57633 1.22615 1.19506 0.87534 1.00039 1.32534 0.91499 1.25740 1.01835 0.94760 1.01993 1.70163 1.34978 1.03515 1.48819 0.85392 0.81257 0.76817 0.77840 1.22232 1.21680 1.18617 1.20803 0.94564 0.92136 0.87367 0.86604 0.89506 0.85394 0.91646 0.86775 0.89971 0.85998 0.74938 0.90652 0.89434 0.88420 0.93153 0.96017 0.92793 0.94395 0.93846 0.98282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.06 14.33 67.78 0.97 -4.09 16 2 C -0.16 -4.82 9.24 25.65 0.24 -4.58 16 3 C 0.13 3.60 2.73 30.53 0.08 3.68 16 4 H 0.06 2.04 7.25 -2.38 -0.02 2.02 16 5 O -0.38 -9.65 11.21 -148.98 -1.67 -11.32 16 6 C 0.04 0.67 7.70 72.36 0.56 1.23 16 7 C -0.14 -2.14 6.55 31.58 0.21 -1.93 16 8 C -0.13 -3.21 2.94 -10.24 -0.03 -3.24 16 9 H 0.13 2.75 8.05 -2.38 -0.02 2.73 16 10 C 0.52 17.44 7.02 87.66 0.62 18.06 16 11 O -0.58 -26.09 15.46 -3.02 -0.05 -26.13 16 12 N -0.70 -21.28 5.03 -442.16 -2.22 -23.50 16 13 C 0.13 4.97 2.61 45.07 0.12 5.09 16 14 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 15 C -0.11 -2.97 5.35 30.62 0.16 -2.81 16 16 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 17 C 0.13 5.43 6.52 86.36 0.56 5.99 16 18 N -0.61 -31.52 3.00 -699.10 -2.09 -33.62 16 19 C -0.27 -15.33 9.59 84.03 0.81 -14.53 16 20 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 21 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 22 N -0.93 -57.77 11.19 21.65 0.24 -57.53 16 23 Si 0.96 47.84 29.59 68.60 2.03 49.87 16 24 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 27 C 0.18 8.89 4.89 86.36 0.42 9.31 16 28 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.09 2.85 7.87 -2.91 -0.02 2.83 16 30 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.31 7.85 -2.38 -0.02 1.29 16 34 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.41 8.82 8.60 -92.71 -0.80 8.03 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.04 2.62 6.04 -2.39 -0.01 2.60 16 44 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 Total: -1.00 -77.34 353.98 1.73 -75.61 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.18 Total: 20.36 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.31 Total: 6.27 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.08 Total: -114.65 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.72 Total: -37.45 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -77.34 1.73 -75.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008558523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.076 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds