Wall clock time and date at job start Tue Mar 31 2020 07:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 119.99664 * 2 1 4 4 H 1.08988 * 110.68096 * 357.03094 * 3 2 1 5 5 O 1.44380 * 110.61667 * 234.06320 * 3 2 1 6 6 C 1.43740 * 106.97833 * 201.43734 * 5 3 2 7 7 C 1.54101 * 107.29213 * 26.52139 * 6 5 3 8 8 C 1.54806 * 104.18682 * 357.96581 * 7 6 5 9 9 H 1.09001 * 110.90773 * 97.35651 * 8 7 6 10 10 C 1.50700 * 110.90809 * 220.92305 * 8 7 6 11 11 O 1.21288 * 120.00149 * 118.54836 * 10 8 7 12 12 N 1.34774 * 120.00344 * 298.54972 * 10 8 7 13 13 C 1.46501 * 120.00288 * 179.97438 * 12 10 8 14 14 H 1.09003 * 109.52330 * 34.91980 * 13 12 10 15 15 C 1.53039 * 109.49636 * 154.99840 * 13 12 10 16 16 C 1.53042 * 109.53618 * 181.31672 * 15 13 12 17 17 C 1.53187 * 109.31412 * 298.63748 * 16 15 13 18 18 N 1.46927 * 108.77707 * 54.63025 * 17 16 15 19 19 C 1.36939 * 120.62547 * 126.37221 * 18 17 16 20 20 H 1.07999 * 119.99940 * 207.69033 * 19 18 17 21 21 C 1.38807 * 120.00306 * 27.69141 * 19 18 17 22 22 N 1.31622 * 120.00399 * 17.35694 * 21 19 18 23 23 Si 1.86806 * 120.00130 * 197.36036 * 21 19 18 24 24 H 1.48504 * 109.47203 * 59.99822 * 23 21 19 25 25 H 1.48498 * 109.47147 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46877 * 300.00014 * 23 21 19 27 27 C 1.46918 * 118.74019 * 306.39609 * 18 17 16 28 28 H 1.08003 * 120.00184 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00065 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99766 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.88224 * 267.09109 * 6 5 3 32 32 H 1.09003 * 110.00492 * 146.01162 * 6 5 3 33 33 H 1.09005 * 110.48173 * 239.29348 * 7 6 5 34 34 H 1.08998 * 110.49445 * 116.64348 * 7 6 5 35 35 H 0.96995 * 119.99668 * 359.97438 * 12 10 8 36 36 H 1.08998 * 109.45984 * 61.29617 * 15 13 12 37 37 H 1.09002 * 109.46257 * 301.33400 * 15 13 12 38 38 H 1.09002 * 109.49805 * 178.68095 * 16 15 13 39 39 H 1.09001 * 109.50070 * 58.58814 * 16 15 13 40 40 H 1.08998 * 109.58821 * 174.42657 * 17 16 15 41 41 H 1.09003 * 109.58790 * 294.84776 * 17 16 15 42 42 H 0.96996 * 120.00742 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.58627 * 293.81655 * 27 18 17 44 44 H 1.08999 * 109.70353 * 173.46619 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3739 2.1476 -0.0528 5 8 3.0044 1.3489 -1.0941 6 6 4.0000 2.3277 -0.7525 7 6 4.0580 2.4046 0.7855 8 6 2.9645 1.4152 1.2563 9 1 3.3983 0.4481 1.5105 10 6 2.1946 1.9795 2.4225 11 8 1.0022 2.1778 2.3231 12 7 2.8311 2.2640 3.5759 13 6 2.0828 2.8131 4.7094 14 1 1.0819 2.3817 4.7285 15 6 2.8096 2.4752 6.0131 16 6 2.0117 3.0201 7.2000 17 6 1.9090 4.5441 7.0846 18 7 1.3437 4.8820 5.7712 19 6 0.2434 5.6912 5.6726 20 1 -0.4253 5.5931 4.8302 21 6 -0.0126 6.6375 6.6553 22 7 0.9431 7.0007 7.4842 23 14 -1.7137 7.3955 6.8016 24 1 -2.7109 6.3269 7.0641 25 1 -1.7267 8.3700 7.9220 26 1 -2.0559 8.0916 5.5353 27 6 1.9811 4.3349 4.5658 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 3.7212 3.2986 -1.1620 32 1 4.9707 2.0250 -1.1453 33 1 3.8305 3.4149 1.1257 34 1 5.0374 2.0909 1.1466 35 1 3.7846 2.1051 3.6556 36 1 3.8012 2.9276 6.0038 37 1 2.9051 1.3933 6.1058 38 1 2.5177 2.7587 8.1293 39 1 1.0115 2.5868 7.1956 40 1 1.2595 4.9272 7.8716 41 1 2.9012 4.9854 7.1798 42 1 0.7644 7.6622 8.1707 43 1 2.9790 4.7590 4.4556 44 1 1.3811 4.5799 3.6894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008558526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:18 Heat of formation + Delta-G solvation = -44.086665 kcal Electronic energy + Delta-G solvation = -24471.346037 eV Core-core repulsion = 21003.540946 eV Total energy + Delta-G solvation = -3467.805091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50714 -38.80053 -37.23530 -34.41506 -33.86655 -32.81649 -32.03421 -30.47686 -29.02359 -28.25285 -25.29486 -23.94262 -22.49778 -22.14404 -21.64800 -20.18015 -19.96963 -19.32066 -17.40318 -16.80753 -16.40235 -15.84611 -15.81585 -15.07314 -14.72611 -14.49470 -14.07969 -13.82233 -13.71813 -13.50795 -13.27192 -13.18090 -12.61598 -12.43668 -12.39216 -11.97527 -11.85306 -11.63970 -11.20692 -11.09239 -11.02949 -10.89511 -10.78266 -10.28548 -10.25805 -9.98926 -9.91709 -9.88766 -9.64949 -9.58576 -9.37785 -8.84039 -8.40401 -6.68309 -5.78801 -3.20935 2.10662 2.75907 3.25331 3.41053 3.45638 3.48848 3.84906 4.29794 4.41722 4.51567 4.62631 4.86777 4.96714 5.06538 5.14826 5.22706 5.28515 5.37460 5.50527 5.52122 5.55933 5.60581 5.66525 5.70531 5.76814 5.85767 6.06139 6.13826 6.21831 6.49729 6.51433 6.58655 6.59329 6.65087 6.67230 6.76864 6.81809 6.97101 7.34498 7.63325 7.70702 7.82395 8.38916 8.46647 9.21713 9.84073 10.39541 11.29925 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.003833 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.407113 B = 7303.136580 C = 7742.939769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.127 3.873 4 H 0.088 0.912 5 O -0.371 6.371 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.138 4.138 9 H 0.110 0.890 10 C 0.521 3.479 11 O -0.529 6.529 12 N -0.720 5.720 13 C 0.125 3.875 14 H 0.086 0.914 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.167 3.833 18 N -0.587 5.587 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.144 3.856 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.016 0.984 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -13.231 -10.871 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.069 3.931 4 H 0.106 0.894 5 O -0.291 6.291 6 C -0.029 4.029 7 C -0.187 4.187 8 C -0.160 4.160 9 H 0.128 0.872 10 C 0.306 3.694 11 O -0.405 6.405 12 N -0.371 5.371 13 C 0.020 3.980 14 H 0.104 0.896 15 C -0.153 4.153 16 C -0.180 4.180 17 C 0.042 3.958 18 N -0.310 5.310 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.016 3.984 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.416 -13.046 -10.990 18.600 hybrid contribution -0.170 0.455 0.465 0.673 sum 7.246 -12.591 -10.525 17.939 Atomic orbital electron populations 1.23922 0.95761 1.02371 0.96987 1.22516 0.95719 0.96685 1.02675 1.21994 0.90463 0.97254 0.83381 0.89411 1.88909 1.38546 1.60303 1.41300 1.23127 0.92811 0.92987 0.93948 1.22974 0.98957 1.00382 0.96341 1.22892 0.96991 1.00973 0.95103 0.87202 1.20076 0.87844 0.78054 0.83452 1.90740 1.14879 1.52551 1.82332 1.46142 1.12140 1.65264 1.13520 1.21761 0.95766 0.96951 0.83536 0.89601 1.21674 0.99261 0.99358 0.94966 1.22183 0.99196 1.01029 0.95553 1.20842 0.97575 0.88201 0.89210 1.43984 1.32466 1.55140 0.99426 1.19176 0.99308 1.10903 1.08743 0.91637 1.25009 0.97735 0.96686 1.00075 1.70026 1.30459 1.32999 1.21388 0.86356 0.84414 0.78642 0.77319 1.20956 1.21617 1.20839 1.21158 0.96114 0.89678 0.91459 0.87863 0.88038 0.87025 0.91979 0.89536 0.89658 0.89507 0.77273 0.92279 0.93143 0.92718 0.92426 0.89239 0.96332 0.93599 0.96620 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 14.33 29.02 0.42 -1.34 16 2 C -0.16 -1.84 9.24 -36.03 -0.33 -2.18 16 3 C 0.13 1.57 2.73 -26.83 -0.07 1.50 16 4 H 0.09 1.25 7.24 -51.94 -0.38 0.87 16 5 O -0.37 -4.52 11.21 -35.23 -0.39 -4.91 16 6 C 0.05 0.45 7.70 37.73 0.29 0.74 16 7 C -0.15 -1.33 6.55 -25.20 -0.17 -1.49 16 8 C -0.14 -1.52 2.94 -89.76 -0.26 -1.78 16 9 H 0.11 1.02 8.05 -51.93 -0.42 0.60 16 10 C 0.52 7.60 7.02 -10.99 -0.08 7.52 16 11 O -0.53 -9.96 15.46 5.55 0.09 -9.88 16 12 N -0.72 -9.88 5.03 -53.69 -0.27 -10.15 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.02 16 14 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 15 C -0.11 -1.81 5.35 -26.69 -0.14 -1.95 16 16 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 17 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 18 N -0.59 -14.87 2.99 -172.33 -0.52 -15.39 16 19 C -0.25 -7.08 9.59 -15.06 -0.14 -7.22 16 20 H 0.07 1.86 7.89 -52.49 -0.41 1.44 16 21 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 22 N -0.90 -26.22 11.19 55.49 0.62 -25.59 16 23 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.14 3.09 6.09 -3.72 -0.02 3.07 16 28 H 0.10 1.28 7.87 -52.48 -0.41 0.86 16 29 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.39 4.12 8.60 -40.82 -0.35 3.77 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 2.36 6.03 -51.93 -0.31 2.05 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 1.32 7.94 -51.93 -0.41 0.90 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -32.06 353.99 -8.41 -40.48 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.28 Total: 3.04 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.96 Total: 0.05 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.17 Total: -51.13 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.31 Total: -14.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.06 -8.41 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008558526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.611 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds