Wall clock time and date at job start Tue Mar 31 2020 07:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 119.99664 * 2 1 4 4 H 1.08988 * 110.68096 * 357.03094 * 3 2 1 5 5 O 1.44380 * 110.61667 * 234.06320 * 3 2 1 6 6 C 1.43740 * 106.97833 * 201.43734 * 5 3 2 7 7 C 1.54101 * 107.29213 * 26.52139 * 6 5 3 8 8 C 1.54806 * 104.18682 * 357.96581 * 7 6 5 9 9 H 1.09001 * 110.90773 * 97.35651 * 8 7 6 10 10 C 1.50700 * 110.90809 * 220.92305 * 8 7 6 11 11 O 1.21288 * 120.00149 * 118.54836 * 10 8 7 12 12 N 1.34774 * 120.00344 * 298.54972 * 10 8 7 13 13 C 1.46501 * 120.00288 * 179.97438 * 12 10 8 14 14 H 1.09003 * 109.52330 * 34.91980 * 13 12 10 15 15 C 1.53039 * 109.49636 * 154.99840 * 13 12 10 16 16 C 1.53042 * 109.53618 * 181.31672 * 15 13 12 17 17 C 1.53187 * 109.31412 * 298.63748 * 16 15 13 18 18 N 1.46927 * 108.77707 * 54.63025 * 17 16 15 19 19 C 1.36939 * 120.62547 * 126.37221 * 18 17 16 20 20 H 1.07999 * 119.99940 * 207.69033 * 19 18 17 21 21 C 1.38807 * 120.00306 * 27.69141 * 19 18 17 22 22 N 1.31622 * 120.00399 * 17.35694 * 21 19 18 23 23 Si 1.86806 * 120.00130 * 197.36036 * 21 19 18 24 24 H 1.48504 * 109.47203 * 59.99822 * 23 21 19 25 25 H 1.48498 * 109.47147 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46877 * 300.00014 * 23 21 19 27 27 C 1.46918 * 118.74019 * 306.39609 * 18 17 16 28 28 H 1.08003 * 120.00184 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00065 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99766 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.88224 * 267.09109 * 6 5 3 32 32 H 1.09003 * 110.00492 * 146.01162 * 6 5 3 33 33 H 1.09005 * 110.48173 * 239.29348 * 7 6 5 34 34 H 1.08998 * 110.49445 * 116.64348 * 7 6 5 35 35 H 0.96995 * 119.99668 * 359.97438 * 12 10 8 36 36 H 1.08998 * 109.45984 * 61.29617 * 15 13 12 37 37 H 1.09002 * 109.46257 * 301.33400 * 15 13 12 38 38 H 1.09002 * 109.49805 * 178.68095 * 16 15 13 39 39 H 1.09001 * 109.50070 * 58.58814 * 16 15 13 40 40 H 1.08998 * 109.58821 * 174.42657 * 17 16 15 41 41 H 1.09003 * 109.58790 * 294.84776 * 17 16 15 42 42 H 0.96996 * 120.00742 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.58627 * 293.81655 * 27 18 17 44 44 H 1.08999 * 109.70353 * 173.46619 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3739 2.1476 -0.0528 5 8 3.0044 1.3489 -1.0941 6 6 4.0000 2.3277 -0.7525 7 6 4.0580 2.4046 0.7855 8 6 2.9645 1.4152 1.2563 9 1 3.3983 0.4481 1.5105 10 6 2.1946 1.9795 2.4225 11 8 1.0022 2.1778 2.3231 12 7 2.8311 2.2640 3.5759 13 6 2.0828 2.8131 4.7094 14 1 1.0819 2.3817 4.7285 15 6 2.8096 2.4752 6.0131 16 6 2.0117 3.0201 7.2000 17 6 1.9090 4.5441 7.0846 18 7 1.3437 4.8820 5.7712 19 6 0.2434 5.6912 5.6726 20 1 -0.4253 5.5931 4.8302 21 6 -0.0126 6.6375 6.6553 22 7 0.9431 7.0007 7.4842 23 14 -1.7137 7.3955 6.8016 24 1 -2.7109 6.3269 7.0641 25 1 -1.7267 8.3700 7.9220 26 1 -2.0559 8.0916 5.5353 27 6 1.9811 4.3349 4.5658 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 3.7212 3.2986 -1.1620 32 1 4.9707 2.0250 -1.1453 33 1 3.8305 3.4149 1.1257 34 1 5.0374 2.0909 1.1466 35 1 3.7846 2.1051 3.6556 36 1 3.8012 2.9276 6.0038 37 1 2.9051 1.3933 6.1058 38 1 2.5177 2.7587 8.1293 39 1 1.0115 2.5868 7.1956 40 1 1.2595 4.9272 7.8716 41 1 2.9012 4.9854 7.1798 42 1 0.7644 7.6622 8.1707 43 1 2.9790 4.7590 4.4556 44 1 1.3811 4.5799 3.6894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008558526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:17 Heat of formation + Delta-G solvation = -65.918476 kcal Electronic energy + Delta-G solvation = -24472.292736 eV Core-core repulsion = 21003.540946 eV Total energy + Delta-G solvation = -3468.751790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57450 -39.98357 -38.75827 -35.97118 -34.79799 -34.29334 -33.20996 -32.35413 -30.33411 -29.34293 -27.27287 -25.08787 -23.89388 -23.44488 -22.96560 -21.31670 -21.07061 -20.78415 -18.74049 -18.47439 -17.38422 -17.09151 -16.88653 -16.67336 -16.12971 -15.82079 -15.64106 -15.24305 -14.87417 -14.64500 -14.55543 -14.47142 -14.17183 -14.03984 -13.59186 -13.36077 -13.05432 -12.89072 -12.75256 -12.56559 -12.42670 -12.15239 -12.04259 -11.97898 -11.87509 -11.74664 -11.57011 -11.32070 -10.89434 -10.69935 -10.62496 -10.37369 -10.10928 -8.71114 -7.92423 -5.37691 1.21591 1.42998 1.45164 1.52548 1.60451 2.08819 2.48929 2.97751 3.21728 3.45503 3.53403 3.68156 3.79505 3.89647 4.06599 4.10605 4.11753 4.23087 4.26247 4.29403 4.41741 4.47539 4.57548 4.74188 4.79957 4.82429 4.88050 4.90823 4.98319 5.01382 5.05616 5.11957 5.16667 5.26704 5.46614 5.55778 5.59526 5.61256 5.74705 5.75258 5.89861 6.34791 6.59141 7.11093 7.28924 7.81066 8.30386 9.13007 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.003833 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.407113 B = 7303.136580 C = 7742.939769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.163 4.163 3 C 0.122 3.878 4 H 0.056 0.944 5 O -0.384 6.384 6 C 0.041 3.959 7 C -0.142 4.142 8 C -0.126 4.126 9 H 0.141 0.859 10 C 0.519 3.481 11 O -0.578 6.578 12 N -0.704 5.704 13 C 0.142 3.858 14 H 0.055 0.945 15 C -0.104 4.104 16 C -0.131 4.131 17 C 0.171 3.829 18 N -0.607 5.607 19 C -0.270 4.270 20 H 0.051 0.949 21 C -0.041 4.041 22 N -0.928 5.928 23 Si 0.964 3.036 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.279 1.279 27 C 0.146 3.854 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.006 0.994 42 H 0.253 0.747 43 H 0.022 0.978 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.438 -15.310 -11.016 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.064 3.936 4 H 0.074 0.926 5 O -0.303 6.303 6 C -0.035 4.035 7 C -0.180 4.180 8 C -0.148 4.148 9 H 0.159 0.841 10 C 0.305 3.695 11 O -0.457 6.457 12 N -0.356 5.356 13 C 0.035 3.965 14 H 0.073 0.927 15 C -0.142 4.142 16 C -0.170 4.170 17 C 0.046 3.954 18 N -0.331 5.331 19 C -0.400 4.400 20 H 0.069 0.931 21 C -0.237 4.237 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.205 1.205 27 C 0.019 3.981 28 H 0.101 0.899 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.589 -15.150 -11.151 21.114 hybrid contribution -0.817 1.155 0.435 1.480 sum 8.772 -13.995 -10.716 19.689 Atomic orbital electron populations 1.24036 0.96116 1.02507 0.97361 1.22733 0.95822 0.97168 1.02348 1.21904 0.90581 0.96660 0.84449 0.92619 1.88898 1.38976 1.60997 1.41450 1.23355 0.93339 0.92491 0.94338 1.23015 0.99889 0.99102 0.95988 1.22863 0.96734 1.02657 0.92533 0.84146 1.20758 0.87447 0.77053 0.84196 1.90734 1.17364 1.54479 1.83117 1.45874 1.13024 1.64432 1.12287 1.21234 0.95500 0.93635 0.86115 0.92661 1.21606 0.98967 1.01619 0.91971 1.22022 0.99703 0.96822 0.98457 1.20723 0.95623 0.91680 0.87356 1.44213 1.32359 1.55374 1.01190 1.19342 1.00412 1.11638 1.08656 0.93098 1.25684 1.00952 0.97241 0.99838 1.70151 1.31962 1.33467 1.21759 0.85411 0.80357 0.77836 0.77277 1.20596 1.21108 1.20503 1.21194 0.95180 0.92587 0.89092 0.89913 0.85848 0.84743 0.92438 0.86682 0.91058 0.85781 0.74666 0.90441 0.89436 0.89694 0.93582 0.92773 0.97611 0.93809 0.96043 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 14.33 67.79 0.97 -2.78 16 2 C -0.16 -3.63 9.24 25.65 0.24 -3.39 16 3 C 0.12 2.96 2.73 30.53 0.08 3.04 16 4 H 0.06 1.69 7.24 -2.39 -0.02 1.67 16 5 O -0.38 -8.75 11.21 -148.98 -1.67 -10.42 16 6 C 0.04 0.67 7.70 72.35 0.56 1.22 16 7 C -0.14 -2.13 6.55 31.58 0.21 -1.92 16 8 C -0.13 -2.50 2.94 -10.24 -0.03 -2.53 16 9 H 0.14 1.99 8.05 -2.39 -0.02 1.97 16 10 C 0.52 14.65 7.02 87.66 0.62 15.26 16 11 O -0.58 -22.44 15.46 -3.05 -0.05 -22.49 16 12 N -0.70 -17.82 5.03 -442.16 -2.22 -20.04 16 13 C 0.14 4.85 2.60 45.07 0.12 4.97 16 14 H 0.06 2.27 7.58 -2.39 -0.02 2.26 16 15 C -0.10 -2.95 5.35 30.62 0.16 -2.79 16 16 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 17 C 0.17 8.14 5.31 86.36 0.46 8.60 16 18 N -0.61 -31.64 2.99 -699.14 -2.09 -33.73 16 19 C -0.27 -15.77 9.59 84.03 0.81 -14.96 16 20 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 21 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 22 N -0.93 -55.09 11.19 21.65 0.24 -54.85 16 23 Si 0.96 46.34 29.59 68.60 2.03 48.37 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 C 0.15 6.42 6.09 86.36 0.53 6.95 16 28 H 0.08 2.20 7.87 -2.91 -0.02 2.18 16 29 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.29 7.85 -2.38 -0.02 1.27 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.42 7.02 8.60 -92.71 -0.80 6.22 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 2.94 6.03 -2.39 -0.01 2.92 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.03 1.31 7.94 -2.39 -0.02 1.29 16 Total: -1.00 -73.90 353.99 1.73 -72.17 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.18 Total: 15.70 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.31 Total: 5.31 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.07 Total: -108.62 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.72 Total: -32.92 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.90 1.73 -72.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008558526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.247 kcal (2) G-P(sol) polarization free energy of solvation -73.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds