Wall clock time and date at job start Tue Mar 31 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 120.00095 * 2 1 4 4 H 1.09004 * 109.48503 * 359.97404 * 3 2 1 5 5 O 1.42899 * 109.48432 * 239.94868 * 3 2 1 6 6 C 1.42895 * 114.09923 * 178.85910 * 5 3 2 7 7 C 1.53093 * 109.41541 * 61.15490 * 6 5 3 8 8 C 1.53173 * 109.16452 * 302.39206 * 7 6 5 9 9 C 1.53086 * 109.47846 * 120.00139 * 3 2 1 10 10 H 1.08992 * 109.57724 * 57.65808 * 9 3 2 11 11 C 1.50706 * 109.52540 * 297.49852 * 9 3 2 12 12 O 1.21279 * 119.99507 * 0.31794 * 11 9 3 13 13 N 1.34774 * 120.00020 * 180.31484 * 11 9 3 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 9 15 15 H 1.09002 * 110.89047 * 328.87833 * 14 13 11 16 16 C 1.55163 * 111.00134 * 204.99900 * 14 13 11 17 17 C 1.54323 * 102.94494 * 277.42846 * 16 14 13 18 18 N 1.47022 * 107.26836 * 337.80554 * 17 16 14 19 19 C 1.36940 * 125.64811 * 178.89096 * 18 17 16 20 20 H 1.08000 * 119.99839 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00069 * 0.02921 * 19 18 17 22 22 N 1.31624 * 120.00036 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47253 * 59.99895 * 23 21 19 25 25 H 1.48502 * 109.46900 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47174 * 299.99690 * 23 21 19 27 27 C 1.47427 * 108.70606 * 358.94132 * 18 17 16 28 28 H 1.07998 * 119.99969 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99778 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00244 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47905 * 301.17421 * 6 5 3 32 32 H 1.09005 * 109.48160 * 181.13946 * 6 5 3 33 33 H 1.09002 * 109.52113 * 182.48571 * 7 6 5 34 34 H 1.08996 * 109.57287 * 62.33326 * 7 6 5 35 35 H 1.09006 * 109.54583 * 297.11406 * 8 7 6 36 36 H 1.08998 * 109.62034 * 176.89107 * 8 7 6 37 37 H 0.96994 * 119.99756 * 0.02562 * 13 11 9 38 38 H 1.09003 * 110.72156 * 35.79077 * 16 14 13 39 39 H 1.09006 * 110.72026 * 158.88415 * 16 14 13 40 40 H 1.08992 * 109.88328 * 97.22070 * 17 16 14 41 41 H 1.08996 * 109.88391 * 218.39335 * 17 16 14 42 42 H 0.96996 * 120.00487 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.36841 * 265.28858 * 27 18 17 44 44 H 1.09002 * 110.36693 * 142.96457 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3554 2.1338 -0.0005 5 8 2.8861 1.3806 -1.1661 6 6 3.6286 2.5963 -1.2787 7 6 4.5718 2.7294 -0.0801 8 6 3.7512 2.6876 1.2126 9 6 2.9438 1.3864 1.2499 10 1 3.6248 0.5357 1.2729 11 6 2.0740 1.3685 2.4805 12 8 0.8687 1.2920 2.3700 13 7 2.6356 1.4376 3.7037 14 6 1.7901 1.4197 4.8999 15 1 0.8237 1.8823 4.6997 16 6 2.5008 2.1106 6.0936 17 6 3.4095 0.9934 6.6486 18 7 2.8412 -0.2896 6.2099 19 6 3.3643 -1.5269 6.4760 20 1 2.8696 -2.4131 6.1068 21 6 4.5302 -1.6420 7.2204 22 7 5.1333 -0.5619 7.6700 23 14 5.2434 -3.3297 7.5840 24 1 5.5635 -4.0174 6.3073 25 1 6.4814 -3.1806 8.3905 26 1 4.2520 -4.1328 8.3439 27 6 1.6155 -0.0236 5.4350 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 2.9410 3.4419 -1.2958 32 1 4.2112 2.5825 -2.1999 33 1 5.1070 3.6770 -0.1413 34 1 5.2865 1.9065 -0.0847 35 1 3.0715 3.5393 1.2408 36 1 4.4202 2.7263 2.0722 37 1 3.5996 1.4991 3.7919 38 1 3.0960 2.9570 5.7507 39 1 1.7755 2.4291 6.8424 40 1 4.4190 1.1061 6.2535 41 1 3.4282 1.0375 7.7375 42 1 5.9483 -0.6422 8.1898 43 1 0.7384 -0.0858 6.0791 44 1 1.5299 -0.7273 4.6070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014464112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:31 Heat of formation + Delta-G solvation = -40.175240 kcal Electronic energy + Delta-G solvation = -24760.834544 eV Core-core repulsion = 21293.199065 eV Total energy + Delta-G solvation = -3467.635479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43405 -38.74071 -37.14099 -34.30872 -33.81871 -33.47750 -31.75390 -30.27021 -29.13144 -27.25844 -25.15832 -24.75206 -24.06095 -21.36716 -20.19522 -20.08369 -19.88194 -19.69130 -17.44813 -16.81394 -16.36036 -16.09363 -15.53920 -15.00761 -14.70584 -14.55398 -14.24760 -14.05874 -13.83578 -13.57308 -13.32091 -12.84500 -12.61478 -12.33409 -11.94719 -11.85888 -11.78386 -11.63474 -11.22920 -11.04110 -10.97272 -10.89814 -10.71331 -10.50149 -10.34165 -10.17247 -9.97542 -9.75530 -9.68159 -9.59527 -9.01631 -8.72671 -8.50541 -6.83551 -5.73515 -3.06084 2.35497 2.92333 3.39249 3.42203 3.44022 3.44923 3.90841 4.48994 4.54313 4.59384 4.65980 4.80422 4.99058 5.10096 5.16334 5.27913 5.35638 5.37680 5.46225 5.47703 5.53904 5.60448 5.69196 5.76324 5.77951 5.81981 5.83892 5.99886 6.08447 6.20210 6.36766 6.47858 6.52478 6.68663 6.73423 6.87165 7.05855 7.12955 7.51432 7.54152 7.77472 7.90090 8.23353 8.55380 9.20621 9.80614 10.46417 11.38370 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.004110 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.376770 B = 6810.844789 C = 6888.872386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 C 0.145 3.855 4 H 0.068 0.932 5 O -0.375 6.375 6 C 0.058 3.942 7 C -0.155 4.155 8 C -0.114 4.114 9 C -0.137 4.137 10 H 0.106 0.894 11 C 0.521 3.479 12 O -0.542 6.542 13 N -0.702 5.702 14 C 0.129 3.871 15 H 0.089 0.911 16 C -0.154 4.154 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.126 3.874 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.026 0.974 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 9.130 -14.877 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C 0.088 3.912 4 H 0.085 0.915 5 O -0.294 6.294 6 C -0.018 4.018 7 C -0.193 4.193 8 C -0.152 4.152 9 C -0.158 4.158 10 H 0.124 0.876 11 C 0.307 3.693 12 O -0.420 6.420 13 N -0.352 5.352 14 C 0.023 3.977 15 H 0.107 0.893 16 C -0.193 4.193 17 C 0.052 3.948 18 N -0.331 5.331 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.001 4.001 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.611 8.841 -14.947 17.738 hybrid contribution 1.063 -0.737 0.719 1.480 sum -2.548 8.104 -14.228 16.571 Atomic orbital electron populations 1.23696 0.95542 1.01656 0.97056 1.22365 0.95640 0.96500 1.02428 1.20824 0.90156 0.97025 0.83230 0.91460 1.87985 1.60192 1.38729 1.42492 1.22591 0.93662 0.87243 0.98334 1.22203 0.98889 1.03227 0.94955 1.21592 0.98696 0.96093 0.98770 1.21952 0.98640 1.00950 0.94291 0.87620 1.20181 0.88660 0.76137 0.84370 1.90675 1.14643 1.49861 1.86779 1.45839 1.10817 1.73459 1.05094 1.22119 0.93876 0.97856 0.83853 0.89296 1.23222 1.00127 0.99294 0.96619 1.21159 0.93822 0.81833 0.98028 1.44468 1.24785 1.02549 1.61250 1.19011 1.05173 0.83239 1.27935 0.90637 1.24763 0.97952 0.97275 1.00405 1.69938 1.20231 1.26011 1.41036 0.86212 0.78354 0.83404 0.77875 1.21240 1.21607 1.21196 1.21933 0.90558 0.93481 0.94172 0.88529 0.88404 0.87274 0.93229 0.88769 0.90468 0.90581 0.91283 0.90466 0.76393 0.91718 0.91044 0.93658 0.93820 0.93770 0.95592 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 13.11 29.01 0.38 -1.48 16 2 C -0.15 -2.08 8.04 -36.02 -0.29 -2.37 16 3 C 0.15 1.90 2.17 -27.84 -0.06 1.84 16 4 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 5 O -0.37 -4.70 10.39 -35.23 -0.37 -5.06 16 6 C 0.06 0.54 6.84 37.21 0.25 0.79 16 7 C -0.16 -1.35 6.14 -26.59 -0.16 -1.51 16 8 C -0.11 -1.17 5.18 -26.55 -0.14 -1.30 16 9 C -0.14 -1.76 2.22 -91.63 -0.20 -1.96 16 10 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 11 C 0.52 8.17 6.90 -10.98 -0.08 8.10 16 12 O -0.54 -9.77 13.65 5.56 0.08 -9.70 16 13 N -0.70 -11.31 5.09 -51.73 -0.26 -11.57 16 14 C 0.13 2.27 3.43 -65.78 -0.23 2.05 16 15 H 0.09 1.53 7.54 -51.93 -0.39 1.14 16 16 C -0.15 -2.69 6.55 -24.89 -0.16 -2.86 16 17 C 0.18 4.07 5.36 -3.06 -0.02 4.05 16 18 N -0.60 -15.08 3.39 -170.08 -0.58 -15.66 16 19 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.13 2.67 6.93 -2.53 -0.02 2.66 16 28 H 0.10 1.24 7.83 -52.49 -0.41 0.83 16 29 H 0.10 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 37 H 0.40 6.23 8.15 -40.82 -0.33 5.90 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 41 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -31.06 349.79 -8.60 -39.67 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.33 Total: 4.72 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.97 Total: 1.29 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.27 Total: -53.19 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.29 Total: -14.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.06 -8.60 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014464112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.509 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds