Wall clock time and date at job start Tue Mar 31 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 120.00095 * 2 1 4 4 H 1.09004 * 109.48503 * 359.97404 * 3 2 1 5 5 O 1.42899 * 109.48432 * 239.94868 * 3 2 1 6 6 C 1.42895 * 114.09923 * 178.85910 * 5 3 2 7 7 C 1.53093 * 109.41541 * 61.15490 * 6 5 3 8 8 C 1.53173 * 109.16452 * 302.39206 * 7 6 5 9 9 C 1.53086 * 109.47846 * 120.00139 * 3 2 1 10 10 H 1.08992 * 109.57724 * 57.65808 * 9 3 2 11 11 C 1.50706 * 109.52540 * 297.49852 * 9 3 2 12 12 O 1.21279 * 119.99507 * 0.31794 * 11 9 3 13 13 N 1.34774 * 120.00020 * 180.31484 * 11 9 3 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 9 15 15 H 1.09002 * 110.89047 * 328.87833 * 14 13 11 16 16 C 1.55163 * 111.00134 * 204.99900 * 14 13 11 17 17 C 1.54323 * 102.94494 * 277.42846 * 16 14 13 18 18 N 1.47022 * 107.26836 * 337.80554 * 17 16 14 19 19 C 1.36940 * 125.64811 * 178.89096 * 18 17 16 20 20 H 1.08000 * 119.99839 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00069 * 0.02921 * 19 18 17 22 22 N 1.31624 * 120.00036 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47253 * 59.99895 * 23 21 19 25 25 H 1.48502 * 109.46900 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47174 * 299.99690 * 23 21 19 27 27 C 1.47427 * 108.70606 * 358.94132 * 18 17 16 28 28 H 1.07998 * 119.99969 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.99778 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00244 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47905 * 301.17421 * 6 5 3 32 32 H 1.09005 * 109.48160 * 181.13946 * 6 5 3 33 33 H 1.09002 * 109.52113 * 182.48571 * 7 6 5 34 34 H 1.08996 * 109.57287 * 62.33326 * 7 6 5 35 35 H 1.09006 * 109.54583 * 297.11406 * 8 7 6 36 36 H 1.08998 * 109.62034 * 176.89107 * 8 7 6 37 37 H 0.96994 * 119.99756 * 0.02562 * 13 11 9 38 38 H 1.09003 * 110.72156 * 35.79077 * 16 14 13 39 39 H 1.09006 * 110.72026 * 158.88415 * 16 14 13 40 40 H 1.08992 * 109.88328 * 97.22070 * 17 16 14 41 41 H 1.08996 * 109.88391 * 218.39335 * 17 16 14 42 42 H 0.96996 * 120.00487 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.36841 * 265.28858 * 27 18 17 44 44 H 1.09002 * 110.36693 * 142.96457 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3554 2.1338 -0.0005 5 8 2.8861 1.3806 -1.1661 6 6 3.6286 2.5963 -1.2787 7 6 4.5718 2.7294 -0.0801 8 6 3.7512 2.6876 1.2126 9 6 2.9438 1.3864 1.2499 10 1 3.6248 0.5357 1.2729 11 6 2.0740 1.3685 2.4805 12 8 0.8687 1.2920 2.3700 13 7 2.6356 1.4376 3.7037 14 6 1.7901 1.4197 4.8999 15 1 0.8237 1.8823 4.6997 16 6 2.5008 2.1106 6.0936 17 6 3.4095 0.9934 6.6486 18 7 2.8412 -0.2896 6.2099 19 6 3.3643 -1.5269 6.4760 20 1 2.8696 -2.4131 6.1068 21 6 4.5302 -1.6420 7.2204 22 7 5.1333 -0.5619 7.6700 23 14 5.2434 -3.3297 7.5840 24 1 5.5635 -4.0174 6.3073 25 1 6.4814 -3.1806 8.3905 26 1 4.2520 -4.1328 8.3439 27 6 1.6155 -0.0236 5.4350 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 2.9410 3.4419 -1.2958 32 1 4.2112 2.5825 -2.1999 33 1 5.1070 3.6770 -0.1413 34 1 5.2865 1.9065 -0.0847 35 1 3.0715 3.5393 1.2408 36 1 4.4202 2.7263 2.0722 37 1 3.5996 1.4991 3.7919 38 1 3.0960 2.9570 5.7507 39 1 1.7755 2.4291 6.8424 40 1 4.4190 1.1061 6.2535 41 1 3.4282 1.0375 7.7375 42 1 5.9483 -0.6422 8.1898 43 1 0.7384 -0.0858 6.0791 44 1 1.5299 -0.7273 4.6070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014464112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:31 Heat of formation + Delta-G solvation = -60.096790 kcal Electronic energy + Delta-G solvation = -24761.698408 eV Core-core repulsion = 21293.199065 eV Total energy + Delta-G solvation = -3468.499342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55397 -39.95260 -38.66427 -35.56422 -34.88766 -34.79269 -33.44302 -31.37337 -30.80348 -28.93257 -26.54866 -25.97938 -25.28726 -22.50467 -21.90988 -21.38522 -20.96416 -20.90880 -18.99715 -18.35129 -17.54282 -17.14884 -16.77904 -16.59021 -16.07655 -15.74441 -15.63841 -15.30562 -15.09999 -14.85705 -14.53509 -14.05093 -13.87971 -13.77790 -13.56705 -13.41212 -12.89820 -12.80089 -12.75828 -12.56484 -12.27405 -12.10464 -12.05193 -12.03739 -11.87333 -11.80586 -11.59554 -11.38484 -10.80321 -10.71784 -10.64252 -10.08711 -9.99463 -8.86238 -7.85455 -5.19510 1.32624 1.45436 1.47354 1.53825 1.68082 2.20340 2.48936 2.98823 3.33423 3.58176 3.66175 3.69264 3.76414 3.84023 4.00660 4.07612 4.09702 4.19683 4.25748 4.33260 4.39463 4.56763 4.68115 4.69416 4.75305 4.80980 4.87614 4.90538 4.96776 4.99806 5.03271 5.04142 5.11904 5.29759 5.43673 5.60221 5.68077 5.70216 5.76975 5.85580 6.19846 6.25431 6.61695 7.11720 7.28351 7.77309 8.41344 9.24221 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.004110 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.376770 B = 6810.844789 C = 6888.872386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.170 4.170 3 C 0.150 3.850 4 H 0.063 0.937 5 O -0.391 6.391 6 C 0.050 3.950 7 C -0.149 4.149 8 C -0.111 4.111 9 C -0.130 4.130 10 H 0.100 0.900 11 C 0.521 3.479 12 O -0.565 6.565 13 N -0.701 5.701 14 C 0.143 3.857 15 H 0.103 0.897 16 C -0.134 4.134 17 C 0.184 3.816 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.057 4.057 22 N -0.946 5.946 23 Si 0.973 3.027 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.123 3.877 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.405 0.595 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.008 0.992 42 H 0.248 0.752 43 H 0.029 0.971 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 10.172 -15.913 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.093 3.907 4 H 0.081 0.919 5 O -0.310 6.310 6 C -0.026 4.026 7 C -0.187 4.187 8 C -0.149 4.149 9 C -0.152 4.152 10 H 0.118 0.882 11 C 0.308 3.692 12 O -0.444 6.444 13 N -0.351 5.351 14 C 0.037 3.963 15 H 0.121 0.879 16 C -0.172 4.172 17 C 0.060 3.940 18 N -0.347 5.347 19 C -0.372 4.372 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.594 5.594 23 Si 0.801 3.199 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.004 4.004 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.240 0.760 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.408 9.895 -16.007 19.125 hybrid contribution 0.952 -1.087 1.011 1.763 sum -2.456 8.808 -14.997 17.565 Atomic orbital electron populations 1.23834 0.95498 1.02239 0.96408 1.22546 0.96132 0.96983 1.03130 1.20695 0.90147 0.96326 0.83576 0.91892 1.87968 1.60469 1.40524 1.42048 1.22871 0.93900 0.86341 0.99521 1.22188 0.98471 1.04409 0.93629 1.21627 0.98704 0.94533 1.00051 1.21920 0.98241 1.02337 0.92695 0.88163 1.20656 0.88651 0.75047 0.84828 1.90661 1.15837 1.50777 1.87118 1.45832 1.10869 1.73543 1.04897 1.21915 0.94830 0.95154 0.84407 0.87910 1.23072 0.99608 0.97960 0.96569 1.20948 0.94076 0.83103 0.95915 1.44696 1.25880 1.02455 1.61688 1.19306 1.05509 0.84497 1.27925 0.91018 1.25501 0.98404 1.00596 1.00561 1.70134 1.20239 1.27612 1.41457 0.85244 0.77381 0.79556 0.77679 1.20587 1.21697 1.20747 1.22053 0.89271 0.95658 0.93378 0.88470 0.87349 0.87639 0.92281 0.86836 0.87993 0.90997 0.90785 0.89877 0.75972 0.88810 0.89320 0.96123 0.97415 0.94316 0.95346 0.95541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 13.11 67.78 0.89 -2.79 16 2 C -0.17 -4.63 8.04 25.64 0.21 -4.43 16 3 C 0.15 3.79 2.17 29.88 0.06 3.86 16 4 H 0.06 1.63 7.69 -2.39 -0.02 1.61 16 5 O -0.39 -9.26 10.39 -148.98 -1.55 -10.80 16 6 C 0.05 0.80 6.84 72.01 0.49 1.29 16 7 C -0.15 -2.20 6.14 30.68 0.19 -2.01 16 8 C -0.11 -2.04 5.18 30.71 0.16 -1.88 16 9 C -0.13 -3.20 2.22 -11.45 -0.03 -3.22 16 10 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 11 C 0.52 15.76 6.90 87.66 0.60 16.37 16 12 O -0.56 -19.82 13.65 -3.02 -0.04 -19.86 16 13 N -0.70 -21.65 5.09 -435.95 -2.22 -23.87 16 14 C 0.14 4.83 3.43 46.39 0.16 4.99 16 15 H 0.10 3.29 7.54 -2.39 -0.02 3.27 16 16 C -0.13 -4.42 6.55 31.78 0.21 -4.21 16 17 C 0.18 8.55 5.36 86.73 0.47 9.02 16 18 N -0.62 -31.31 3.39 -692.00 -2.35 -33.66 16 19 C -0.24 -13.66 10.28 84.03 0.86 -12.80 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 22 N -0.95 -55.17 10.31 21.65 0.22 -54.95 16 23 Si 0.97 45.57 29.55 68.60 2.03 47.59 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C 0.12 5.20 6.93 86.86 0.60 5.80 16 28 H 0.10 2.46 7.83 -2.91 -0.02 2.43 16 29 H 0.11 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 37 H 0.41 12.05 8.15 -92.71 -0.76 11.29 16 38 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 40 H 0.02 1.05 7.38 -2.39 -0.02 1.03 16 41 H 0.01 0.40 7.51 -2.39 -0.02 0.39 16 42 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.26 349.79 1.65 -65.61 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.22 Total: 22.70 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.34 Total: 7.24 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.35 Total: -112.48 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.59 Total: -30.66 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.26 1.65 -65.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014464112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.508 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds