Wall clock time and date at job start Tue Mar 31 2020 07:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99838 * 2 1 4 4 H 1.08995 * 109.48448 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47821 * 239.94129 * 3 2 1 6 6 C 1.42909 * 114.09383 * 178.86295 * 5 3 2 7 7 C 1.53088 * 109.41572 * 61.15973 * 6 5 3 8 8 C 1.53181 * 109.16279 * 302.38830 * 7 6 5 9 9 C 1.53101 * 109.47889 * 120.00227 * 3 2 1 10 10 H 1.08996 * 109.51906 * 57.62071 * 9 3 2 11 11 C 1.50698 * 109.52160 * 297.49575 * 9 3 2 12 12 O 1.21287 * 119.99893 * 359.97438 * 11 9 3 13 13 N 1.34770 * 119.99907 * 179.97438 * 11 9 3 14 14 C 1.46503 * 120.00081 * 179.97438 * 13 11 9 15 15 H 1.09002 * 110.88221 * 31.12006 * 14 13 11 16 16 C 1.55151 * 111.00484 * 154.99980 * 14 13 11 17 17 C 1.54328 * 102.94209 * 82.61374 * 16 14 13 18 18 N 1.47018 * 107.27117 * 22.19095 * 17 16 14 19 19 C 1.36927 * 125.65134 * 181.02114 * 18 17 16 20 20 H 1.08000 * 120.00869 * 185.84546 * 19 18 17 21 21 C 1.38818 * 119.99641 * 5.84658 * 19 18 17 22 22 N 1.31620 * 120.00120 * 7.32245 * 21 19 18 23 23 Si 1.86806 * 119.99723 * 187.31583 * 21 19 18 24 24 H 1.48497 * 109.47369 * 265.01302 * 23 21 19 25 25 H 1.48495 * 109.47152 * 25.01770 * 23 21 19 26 26 H 1.48503 * 109.46604 * 145.01510 * 23 21 19 27 27 C 1.47428 * 108.69935 * 1.29214 * 18 17 16 28 28 H 1.07991 * 119.99991 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99655 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99655 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47401 * 181.14241 * 6 5 3 32 32 H 1.09003 * 109.47771 * 301.17372 * 6 5 3 33 33 H 1.08998 * 109.52467 * 62.29596 * 7 6 5 34 34 H 1.09000 * 109.52034 * 182.42455 * 7 6 5 35 35 H 1.08996 * 109.54607 * 297.11527 * 8 7 6 36 36 H 1.09006 * 109.54209 * 176.84673 * 8 7 6 37 37 H 0.96999 * 120.00462 * 359.97438 * 13 11 9 38 38 H 1.09005 * 110.72276 * 324.24990 * 16 14 13 39 39 H 1.09008 * 110.72240 * 200.97688 * 16 14 13 40 40 H 1.09001 * 109.88089 * 262.77285 * 17 16 14 41 41 H 1.08994 * 109.88037 * 141.61029 * 17 16 14 42 42 H 0.96998 * 119.99403 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.37011 * 94.48185 * 27 18 17 44 44 H 1.09008 * 110.35833 * 216.80471 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1337 -0.0005 5 8 2.8862 1.3804 -1.1661 6 6 3.6288 2.5962 -1.2787 7 6 4.5719 2.7293 -0.0801 8 6 3.7511 2.6876 1.2126 9 6 2.9438 1.3864 1.2500 10 1 3.6240 0.5350 1.2724 11 6 2.0740 1.3686 2.4805 12 8 0.8683 1.2983 2.3698 13 7 2.6360 1.4307 3.7038 14 6 1.7904 1.4140 4.9001 15 1 0.8850 0.8320 4.7278 16 6 2.5729 0.8752 6.1267 17 6 3.3428 2.1188 6.6190 18 7 2.6301 3.3015 6.1144 19 6 3.0031 4.6037 6.3144 20 1 2.3613 5.4065 5.9826 21 6 4.2064 4.8922 6.9437 22 7 5.0541 3.9235 7.2184 23 14 4.6224 6.6551 7.4003 24 1 5.4460 7.2639 6.3250 25 1 3.3683 7.4332 7.5639 26 1 5.3838 6.6696 8.6753 27 6 1.4435 2.8533 5.3630 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 4.2113 2.5823 -2.1998 32 1 2.9412 3.4418 -1.2959 33 1 5.2858 1.9057 -0.0851 34 1 5.1079 3.6764 -0.1419 35 1 3.0716 3.5393 1.2408 36 1 4.4214 2.7256 2.0714 37 1 3.6003 1.4866 3.7924 38 1 3.2641 0.0872 5.8276 39 1 1.8872 0.5171 6.8948 40 1 4.3600 2.1040 6.2276 41 1 3.3629 2.1350 7.7087 42 1 5.8947 4.1252 7.6585 43 1 0.5658 2.8454 6.0092 44 1 1.2748 3.4984 4.5005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014464116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:35 Heat of formation + Delta-G solvation = -40.977483 kcal Electronic energy + Delta-G solvation = -24855.405360 eV Core-core repulsion = 21387.735093 eV Total energy + Delta-G solvation = -3467.670267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39482 -38.70645 -37.13199 -34.27930 -33.78940 -33.45738 -31.75655 -30.25073 -29.13549 -27.26562 -25.06544 -24.75493 -24.04234 -21.30111 -20.24829 -20.05944 -19.90034 -19.62214 -17.42339 -16.82089 -16.33774 -16.08144 -15.44982 -14.90726 -14.75425 -14.60928 -14.18841 -14.01106 -13.84052 -13.51130 -13.33022 -12.82040 -12.56665 -12.33972 -11.95757 -11.80200 -11.77337 -11.61387 -11.13159 -11.03832 -10.98477 -10.86831 -10.72374 -10.46835 -10.35183 -10.14807 -9.98101 -9.74266 -9.70873 -9.56665 -9.03811 -8.72185 -8.51719 -6.83951 -5.74025 -3.09133 2.31803 2.93267 3.36392 3.43089 3.44843 3.45732 3.92692 4.47349 4.61072 4.69012 4.75162 4.86531 5.04030 5.14052 5.18923 5.32507 5.35607 5.39419 5.44622 5.47755 5.62753 5.70140 5.75959 5.76930 5.83057 5.83397 5.93527 6.02562 6.17385 6.21651 6.35644 6.47443 6.52987 6.67027 6.67682 6.84775 7.06402 7.15121 7.42475 7.58806 7.75450 7.92035 8.22675 8.57275 9.18001 9.78892 10.44965 11.35501 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.004528 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.060604 B = 6182.809855 C = 7162.744390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 C 0.143 3.857 4 H 0.069 0.931 5 O -0.376 6.376 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.115 4.115 9 C -0.134 4.134 10 H 0.102 0.898 11 C 0.521 3.479 12 O -0.543 6.543 13 N -0.701 5.701 14 C 0.129 3.871 15 H 0.089 0.911 16 C -0.153 4.153 17 C 0.169 3.831 18 N -0.602 5.602 19 C -0.225 4.225 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.125 3.875 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.251 0.749 43 H 0.027 0.973 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -7.254 -13.744 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C 0.086 3.914 4 H 0.086 0.914 5 O -0.295 6.295 6 C -0.018 4.018 7 C -0.191 4.191 8 C -0.153 4.153 9 C -0.155 4.155 10 H 0.120 0.880 11 C 0.306 3.694 12 O -0.421 6.421 13 N -0.351 5.351 14 C 0.023 3.977 15 H 0.107 0.893 16 C -0.192 4.192 17 C 0.045 3.955 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.217 1.217 27 C -0.002 4.002 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.010 -7.331 -13.837 15.946 hybrid contribution 0.897 1.231 0.781 1.712 sum -2.113 -6.100 -13.056 14.565 Atomic orbital electron populations 1.23713 0.95583 1.01692 0.97026 1.22353 0.95599 0.96432 1.02503 1.20838 0.90279 0.96977 0.83333 0.91358 1.87962 1.60220 1.38883 1.42474 1.22608 0.93720 0.87168 0.98353 1.22195 0.98785 1.03237 0.94931 1.21601 0.98894 0.96000 0.98808 1.21925 0.98483 1.00932 0.94198 0.88024 1.20204 0.88682 0.76097 0.84398 1.90674 1.14583 1.50047 1.86757 1.45825 1.10829 1.73400 1.05085 1.22137 0.93650 0.98065 0.83844 0.89327 1.23194 0.99714 0.99846 0.96414 1.21247 0.95038 0.82180 0.97083 1.44461 1.25322 1.02304 1.60766 1.19039 1.01658 0.81822 1.32781 0.90665 1.24764 0.96376 0.97533 1.01718 1.69938 1.09731 1.29915 1.47297 0.86143 0.77972 0.84160 0.77766 1.21728 1.20697 1.21656 1.21989 0.90969 0.92674 0.94552 0.88489 0.88407 0.87432 0.88793 0.93122 0.90806 0.90331 0.91041 0.90071 0.76303 0.91618 0.91147 0.91941 0.95273 0.93847 0.95535 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 13.12 29.01 0.38 -1.40 16 2 C -0.15 -1.95 8.05 -36.03 -0.29 -2.24 16 3 C 0.14 1.90 2.17 -27.83 -0.06 1.84 16 4 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 5 O -0.38 -4.79 10.39 -35.23 -0.37 -5.16 16 6 C 0.06 0.59 6.84 37.20 0.25 0.85 16 7 C -0.15 -1.56 6.14 -26.59 -0.16 -1.72 16 8 C -0.12 -1.43 5.19 -26.55 -0.14 -1.56 16 9 C -0.13 -1.74 2.22 -91.63 -0.20 -1.95 16 10 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 11 C 0.52 8.25 6.89 -10.99 -0.08 8.17 16 12 O -0.54 -9.86 13.67 5.55 0.08 -9.78 16 13 N -0.70 -11.41 5.11 -51.62 -0.26 -11.67 16 14 C 0.13 2.28 3.43 -65.67 -0.23 2.05 16 15 H 0.09 1.54 7.54 -51.93 -0.39 1.14 16 16 C -0.15 -2.68 6.54 -24.90 -0.16 -2.85 16 17 C 0.17 3.88 5.44 -3.06 -0.02 3.86 16 18 N -0.60 -14.85 3.39 -169.94 -0.58 -15.43 16 19 C -0.22 -6.14 10.26 -15.06 -0.15 -6.30 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 21 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 22 N -0.92 -26.10 10.46 55.49 0.58 -25.52 16 23 Si 0.91 21.78 29.56 -169.99 -5.02 16.75 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.13 2.64 6.95 -2.41 -0.02 2.62 16 28 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.10 1.25 7.83 -52.48 -0.41 0.84 16 30 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 37 H 0.40 6.35 8.18 -40.82 -0.33 6.02 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 40 H 0.06 1.57 6.88 -51.93 -0.36 1.21 16 41 H 0.03 0.74 7.98 -51.93 -0.41 0.33 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -30.47 350.04 -8.59 -39.06 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.33 Total: 5.40 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.97 Total: 1.08 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.26 Total: -52.62 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.29 Total: -14.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.47 -8.59 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014464116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.917 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds