Wall clock time and date at job start Tue Mar 31 2020 07:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99838 * 2 1 4 4 H 1.08995 * 109.48448 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47821 * 239.94129 * 3 2 1 6 6 C 1.42909 * 114.09383 * 178.86295 * 5 3 2 7 7 C 1.53088 * 109.41572 * 61.15973 * 6 5 3 8 8 C 1.53181 * 109.16279 * 302.38830 * 7 6 5 9 9 C 1.53101 * 109.47889 * 120.00227 * 3 2 1 10 10 H 1.08996 * 109.51906 * 57.62071 * 9 3 2 11 11 C 1.50698 * 109.52160 * 297.49575 * 9 3 2 12 12 O 1.21287 * 119.99893 * 359.97438 * 11 9 3 13 13 N 1.34770 * 119.99907 * 179.97438 * 11 9 3 14 14 C 1.46503 * 120.00081 * 179.97438 * 13 11 9 15 15 H 1.09002 * 110.88221 * 31.12006 * 14 13 11 16 16 C 1.55151 * 111.00484 * 154.99980 * 14 13 11 17 17 C 1.54328 * 102.94209 * 82.61374 * 16 14 13 18 18 N 1.47018 * 107.27117 * 22.19095 * 17 16 14 19 19 C 1.36927 * 125.65134 * 181.02114 * 18 17 16 20 20 H 1.08000 * 120.00869 * 185.84546 * 19 18 17 21 21 C 1.38818 * 119.99641 * 5.84658 * 19 18 17 22 22 N 1.31620 * 120.00120 * 7.32245 * 21 19 18 23 23 Si 1.86806 * 119.99723 * 187.31583 * 21 19 18 24 24 H 1.48497 * 109.47369 * 265.01302 * 23 21 19 25 25 H 1.48495 * 109.47152 * 25.01770 * 23 21 19 26 26 H 1.48503 * 109.46604 * 145.01510 * 23 21 19 27 27 C 1.47428 * 108.69935 * 1.29214 * 18 17 16 28 28 H 1.07991 * 119.99991 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99655 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99655 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47401 * 181.14241 * 6 5 3 32 32 H 1.09003 * 109.47771 * 301.17372 * 6 5 3 33 33 H 1.08998 * 109.52467 * 62.29596 * 7 6 5 34 34 H 1.09000 * 109.52034 * 182.42455 * 7 6 5 35 35 H 1.08996 * 109.54607 * 297.11527 * 8 7 6 36 36 H 1.09006 * 109.54209 * 176.84673 * 8 7 6 37 37 H 0.96999 * 120.00462 * 359.97438 * 13 11 9 38 38 H 1.09005 * 110.72276 * 324.24990 * 16 14 13 39 39 H 1.09008 * 110.72240 * 200.97688 * 16 14 13 40 40 H 1.09001 * 109.88089 * 262.77285 * 17 16 14 41 41 H 1.08994 * 109.88037 * 141.61029 * 17 16 14 42 42 H 0.96998 * 119.99403 * 180.02562 * 22 21 19 43 43 H 1.08995 * 110.37011 * 94.48185 * 27 18 17 44 44 H 1.09008 * 110.35833 * 216.80471 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1337 -0.0005 5 8 2.8862 1.3804 -1.1661 6 6 3.6288 2.5962 -1.2787 7 6 4.5719 2.7293 -0.0801 8 6 3.7511 2.6876 1.2126 9 6 2.9438 1.3864 1.2500 10 1 3.6240 0.5350 1.2724 11 6 2.0740 1.3686 2.4805 12 8 0.8683 1.2983 2.3698 13 7 2.6360 1.4307 3.7038 14 6 1.7904 1.4140 4.9001 15 1 0.8850 0.8320 4.7278 16 6 2.5729 0.8752 6.1267 17 6 3.3428 2.1188 6.6190 18 7 2.6301 3.3015 6.1144 19 6 3.0031 4.6037 6.3144 20 1 2.3613 5.4065 5.9826 21 6 4.2064 4.8922 6.9437 22 7 5.0541 3.9235 7.2184 23 14 4.6224 6.6551 7.4003 24 1 5.4460 7.2639 6.3250 25 1 3.3683 7.4332 7.5639 26 1 5.3838 6.6696 8.6753 27 6 1.4435 2.8533 5.3630 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 4.2113 2.5823 -2.1998 32 1 2.9412 3.4418 -1.2959 33 1 5.2858 1.9057 -0.0851 34 1 5.1079 3.6764 -0.1419 35 1 3.0716 3.5393 1.2408 36 1 4.4214 2.7256 2.0714 37 1 3.6003 1.4866 3.7924 38 1 3.2641 0.0872 5.8276 39 1 1.8872 0.5171 6.8948 40 1 4.3600 2.1040 6.2276 41 1 3.3629 2.1350 7.7087 42 1 5.8947 4.1252 7.6585 43 1 0.5658 2.8454 6.0092 44 1 1.2748 3.4984 4.5005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014464116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:34 Heat of formation + Delta-G solvation = -60.240489 kcal Electronic energy + Delta-G solvation = -24856.240667 eV Core-core repulsion = 21387.735093 eV Total energy + Delta-G solvation = -3468.505574 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55652 -39.95098 -38.66472 -35.55394 -34.88009 -34.80390 -33.45426 -31.38064 -30.79996 -28.93693 -26.53780 -26.00412 -25.29230 -22.49082 -21.94777 -21.42612 -20.92210 -20.88571 -18.98386 -18.36784 -17.55828 -17.14553 -16.74758 -16.56497 -16.09078 -15.81711 -15.69177 -15.25931 -15.08882 -14.84552 -14.55952 -14.09625 -13.85235 -13.79084 -13.52109 -13.45696 -12.94856 -12.79177 -12.76214 -12.56521 -12.26825 -12.11975 -12.09071 -11.97951 -11.88106 -11.82491 -11.60207 -11.40041 -10.78696 -10.73227 -10.66683 -10.12647 -9.95677 -8.84913 -7.83362 -5.20243 1.34767 1.45144 1.46579 1.55498 1.66651 2.21486 2.48979 2.96939 3.33208 3.56769 3.66737 3.68699 3.72881 3.84793 3.98084 4.07806 4.09207 4.18500 4.23849 4.33199 4.39535 4.53276 4.67792 4.69391 4.74670 4.78684 4.85157 4.90058 4.98715 4.99675 5.00910 5.03798 5.10279 5.26144 5.43369 5.60495 5.63467 5.70474 5.79682 5.89976 6.21490 6.21953 6.61608 7.11326 7.28116 7.77295 8.41891 9.23863 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.004528 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.060604 B = 6182.809855 C = 7162.744390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.163 4.163 3 C 0.147 3.853 4 H 0.051 0.949 5 O -0.384 6.384 6 C 0.052 3.948 7 C -0.147 4.147 8 C -0.114 4.114 9 C -0.125 4.125 10 H 0.119 0.881 11 C 0.520 3.480 12 O -0.565 6.565 13 N -0.701 5.701 14 C 0.142 3.858 15 H 0.102 0.898 16 C -0.133 4.133 17 C 0.177 3.823 18 N -0.618 5.618 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.970 3.030 24 H -0.285 1.285 25 H -0.275 1.275 26 H -0.293 1.293 27 C 0.123 3.877 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.037 0.963 41 H -0.005 1.005 42 H 0.247 0.753 43 H 0.031 0.969 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -7.982 -14.786 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C 0.089 3.911 4 H 0.069 0.931 5 O -0.304 6.304 6 C -0.024 4.024 7 C -0.185 4.185 8 C -0.152 4.152 9 C -0.146 4.146 10 H 0.137 0.863 11 C 0.307 3.693 12 O -0.445 6.445 13 N -0.351 5.351 14 C 0.036 3.964 15 H 0.120 0.880 16 C -0.172 4.172 17 C 0.052 3.948 18 N -0.344 5.344 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.591 5.591 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.219 1.219 27 C -0.004 4.004 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.240 0.760 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.014 0.986 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.740 -8.063 -14.901 17.163 hybrid contribution 0.763 1.500 1.083 2.002 sum -1.977 -6.562 -13.818 15.424 Atomic orbital electron populations 1.23851 0.95660 1.02147 0.96544 1.22522 0.95910 0.96723 1.02972 1.20732 0.90113 0.96676 0.83616 0.93142 1.87956 1.60308 1.40047 1.42055 1.22828 0.93761 0.86339 0.99463 1.22173 0.98533 1.04385 0.93366 1.21583 0.98612 0.95001 1.00015 1.21889 0.98225 1.01844 0.92662 0.86343 1.20672 0.88675 0.75052 0.84858 1.90663 1.15745 1.50969 1.87079 1.45827 1.10844 1.73461 1.04957 1.21950 0.94382 0.95632 0.84431 0.88015 1.23054 0.99811 0.97819 0.96490 1.21048 0.94760 0.84053 0.94934 1.44670 1.26409 1.02080 1.61251 1.19308 1.01795 0.83202 1.32767 0.91101 1.25479 0.96398 1.01081 1.01979 1.70124 1.09768 1.31426 1.47765 0.85191 0.77683 0.80087 0.77132 1.21242 1.20062 1.21930 1.22103 0.89964 0.94586 0.93703 0.86614 0.89451 0.86212 0.86322 0.93167 0.89855 0.89013 0.92723 0.90835 0.75958 0.88972 0.89311 0.94438 0.98642 0.94338 0.95118 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 13.12 67.78 0.89 -2.56 16 2 C -0.16 -4.00 8.05 25.64 0.21 -3.80 16 3 C 0.15 3.74 2.17 29.88 0.06 3.80 16 4 H 0.05 1.45 7.68 -2.39 -0.02 1.43 16 5 O -0.38 -9.15 10.39 -148.98 -1.55 -10.70 16 6 C 0.05 0.96 6.84 72.01 0.49 1.45 16 7 C -0.15 -2.69 6.14 30.68 0.19 -2.50 16 8 C -0.11 -2.73 5.19 30.71 0.16 -2.57 16 9 C -0.12 -3.10 2.22 -11.45 -0.03 -3.13 16 10 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 11 C 0.52 15.98 6.89 87.66 0.60 16.59 16 12 O -0.57 -20.09 13.67 -3.05 -0.04 -20.13 16 13 N -0.70 -22.02 5.11 -435.62 -2.22 -24.25 16 14 C 0.14 4.83 3.43 46.46 0.16 4.99 16 15 H 0.10 3.29 7.54 -2.39 -0.02 3.28 16 16 C -0.13 -4.43 6.54 31.78 0.21 -4.23 16 17 C 0.18 8.16 5.44 86.73 0.47 8.63 16 18 N -0.62 -30.80 3.39 -691.56 -2.35 -33.14 16 19 C -0.24 -13.39 10.26 84.04 0.86 -12.53 16 20 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 21 C -0.06 -3.08 5.45 84.86 0.46 -2.62 16 22 N -0.94 -54.23 10.46 21.65 0.23 -54.00 16 23 Si 0.97 45.05 29.56 68.60 2.03 47.07 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 C 0.12 5.16 6.95 86.93 0.60 5.76 16 28 H 0.12 2.24 8.06 -2.92 -0.02 2.22 16 29 H 0.09 2.23 7.83 -2.91 -0.02 2.21 16 30 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.87 7.69 -2.38 -0.02 1.85 16 37 H 0.41 12.39 8.18 -92.71 -0.76 11.64 16 38 H 0.09 2.62 8.14 -2.38 -0.02 2.61 16 39 H 0.09 2.67 8.14 -2.38 -0.02 2.66 16 40 H 0.04 1.91 6.88 -2.39 -0.02 1.89 16 41 H 0.00 -0.24 7.98 -2.39 -0.02 -0.26 16 42 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -65.60 350.04 1.65 -63.95 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.21 Total: 23.91 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 5.35 Total: 7.29 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.34 Total: -111.40 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.59 Total: -30.83 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.60 1.65 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014464116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.705 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds