Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99807 * 2 1 4 4 C 1.50702 * 120.00240 * 180.02562 * 2 1 3 5 5 H 1.08997 * 110.32956 * 346.46400 * 4 2 1 6 6 O 1.44427 * 110.46631 * 224.14330 * 4 2 1 7 7 C 1.44416 * 105.27251 * 200.60917 * 6 4 2 8 8 C 1.54481 * 104.80620 * 40.51400 * 7 6 4 9 9 C 1.54484 * 110.36992 * 108.70958 * 4 2 1 10 10 H 1.08997 * 110.51052 * 261.70126 * 9 4 2 11 11 C 1.50695 * 110.51365 * 24.27698 * 9 4 2 12 12 O 1.21281 * 120.00134 * 257.55899 * 11 9 4 13 13 N 1.34781 * 120.00051 * 77.55482 * 11 9 4 14 14 C 1.46498 * 119.99840 * 175.09433 * 13 11 9 15 15 H 1.08993 * 110.78440 * 36.78635 * 14 13 11 16 16 C 1.55154 * 110.71814 * 160.02819 * 14 13 11 17 17 C 1.55133 * 101.48874 * 82.69479 * 16 14 13 18 18 N 1.47430 * 104.71956 * 37.29489 * 17 16 14 19 19 C 1.36934 * 125.64638 * 155.82167 * 18 17 16 20 20 H 1.08004 * 120.00112 * 179.69101 * 19 18 17 21 21 C 1.38809 * 120.00208 * 359.68807 * 19 18 17 22 22 N 1.31619 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00163 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46958 * 180.02562 * 23 21 19 25 25 H 1.48493 * 109.47059 * 300.00081 * 23 21 19 26 26 H 1.48498 * 109.46812 * 60.00246 * 23 21 19 27 27 C 1.47018 * 108.70502 * 335.55374 * 18 17 16 28 28 H 1.08003 * 120.00069 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00267 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47267 * 275.63685 * 3 2 1 31 31 H 1.09003 * 109.46722 * 35.64326 * 3 2 1 32 32 H 1.09006 * 109.47118 * 155.63790 * 3 2 1 33 33 H 1.08998 * 110.37467 * 159.34556 * 7 6 4 34 34 H 1.08998 * 110.37527 * 281.57034 * 7 6 4 35 35 H 1.08997 * 110.51283 * 217.37406 * 8 7 6 36 36 H 1.09000 * 110.50929 * 94.66298 * 8 7 6 37 37 H 0.97000 * 119.99692 * 355.10107 * 13 11 9 38 38 H 1.09000 * 111.00194 * 200.93225 * 16 14 13 39 39 H 1.08994 * 111.00722 * 324.74768 * 16 14 13 40 40 H 1.08999 * 110.49575 * 278.45865 * 17 16 14 41 41 H 1.08997 * 110.34479 * 156.05567 * 17 16 14 42 42 H 0.97005 * 120.00168 * 179.97438 * 22 21 19 43 43 H 1.08995 * 109.88340 * 120.70082 * 27 18 17 44 44 H 1.09000 * 109.88258 * 241.87282 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3923 -2.1300 0.2383 6 8 3.1569 -1.2573 0.9418 7 6 4.0682 -2.2952 0.5201 8 6 4.0838 -2.2043 -1.0219 9 6 2.7347 -1.5379 -1.3724 10 1 2.1268 -2.2016 -1.9873 11 6 2.9614 -0.2261 -2.0787 12 8 2.2211 0.1149 -2.9768 13 7 3.9869 0.5681 -1.7124 14 6 4.2727 1.7904 -2.4677 15 1 3.3493 2.2646 -2.7999 16 6 5.1207 2.7743 -1.6192 17 6 6.5520 2.2179 -1.8394 18 7 6.5712 1.7800 -3.2470 19 6 7.6880 1.6599 -4.0302 20 1 7.5969 1.3247 -5.0529 21 6 8.9372 1.9690 -3.5099 22 7 9.0483 2.3770 -2.2635 23 14 10.4607 1.8059 -4.5785 24 1 11.6600 2.1927 -3.7930 25 1 10.5990 0.3986 -5.0317 26 1 10.3340 2.6963 -5.7602 27 6 5.1935 1.4874 -3.6686 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 2.1577 1.6703 -1.0226 31 1 1.5217 2.0374 0.5989 32 1 3.0559 1.1518 0.4239 33 1 5.0648 -2.1111 0.9212 34 1 3.7055 -3.2719 0.8406 35 1 4.1442 -3.1994 -1.4626 36 1 4.9148 -1.5850 -1.3595 37 1 4.5356 0.3303 -0.9487 38 1 5.0316 3.7929 -1.9969 39 1 4.8409 2.7241 -0.5670 40 1 6.7391 1.3729 -1.1767 41 1 7.2923 3.0008 -1.6756 42 1 9.9213 2.5927 -1.8997 43 1 4.9218 2.1208 -4.5130 44 1 5.1061 0.4372 -3.9470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015826301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -24.843488 kcal Electronic energy + Delta-G solvation = -25475.763706 eV Core-core repulsion = 22008.793062 eV Total energy + Delta-G solvation = -3466.970645 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88712 -38.65758 -37.09874 -35.15345 -33.85307 -32.61442 -31.45527 -29.17978 -28.82490 -27.49099 -26.89225 -24.61329 -23.72309 -22.37585 -20.60875 -20.20027 -19.65578 -18.89716 -17.05994 -16.82336 -16.59264 -16.00095 -15.67740 -15.14313 -14.83655 -14.69254 -14.01916 -13.88135 -13.78663 -13.25844 -13.03147 -12.70082 -12.54354 -12.32052 -12.14672 -11.89912 -11.74798 -11.60678 -11.48139 -11.32525 -11.05344 -10.97378 -10.87156 -10.72893 -10.37085 -10.15543 -10.03151 -9.88651 -9.59733 -9.45027 -9.14528 -8.69602 -8.52199 -6.84697 -5.66882 -3.08074 2.03212 2.80939 3.39548 3.43996 3.45028 3.46634 3.78987 4.32262 4.47995 4.55889 4.63554 4.80657 4.90121 4.99149 5.08261 5.26858 5.39975 5.44115 5.48120 5.52258 5.55423 5.64345 5.67638 5.74394 5.79335 5.86576 5.89315 5.92528 6.11791 6.28897 6.38388 6.46448 6.51142 6.57150 6.58108 6.71719 6.77772 7.07434 7.42858 7.61003 7.80321 7.87799 8.34011 8.50640 9.21018 9.81712 10.46345 11.36915 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.004449 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.647986 B = 6291.878746 C = 6602.891567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.118 4.118 3 C -0.125 4.125 4 C 0.124 3.876 5 H 0.083 0.917 6 O -0.360 6.360 7 C 0.042 3.958 8 C -0.157 4.157 9 C -0.138 4.138 10 H 0.114 0.886 11 C 0.534 3.466 12 O -0.547 6.547 13 N -0.706 5.706 14 C 0.131 3.869 15 H 0.087 0.913 16 C -0.153 4.153 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.286 1.286 26 H -0.285 1.285 27 C 0.128 3.872 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.402 0.598 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.010 0.990 41 H 0.108 0.892 42 H 0.252 0.748 43 H 0.030 0.970 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 -7.357 7.642 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.118 4.118 3 C -0.181 4.181 4 C 0.066 3.934 5 H 0.101 0.899 6 O -0.279 6.279 7 C -0.034 4.034 8 C -0.195 4.195 9 C -0.160 4.160 10 H 0.132 0.868 11 C 0.320 3.680 12 O -0.425 6.425 13 N -0.357 5.357 14 C 0.026 3.974 15 H 0.105 0.895 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.213 1.213 26 H -0.212 1.212 27 C 0.001 3.999 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -13.763 -6.925 7.176 16.997 hybrid contribution 1.045 -0.601 -0.442 1.284 sum -12.718 -7.527 6.734 16.241 Atomic orbital electron populations 1.23616 0.94820 1.02105 1.01147 1.21506 0.95127 0.94929 1.00272 1.21171 1.00611 0.93410 1.02940 1.21908 0.89188 0.95931 0.86342 0.89942 1.89203 1.32800 1.55233 1.50674 1.23493 0.95030 0.91622 0.93284 1.23175 0.96929 1.02611 0.96820 1.22924 0.98598 0.96296 0.98145 0.86766 1.19901 0.80347 0.85025 0.82756 1.90688 1.46183 1.74357 1.31285 1.46117 1.32131 1.24313 1.33171 1.21968 0.97873 0.84667 0.92895 0.89542 1.23375 0.99164 0.98379 0.98314 1.21988 0.91962 0.98659 0.84631 1.44498 1.00568 1.78175 1.09626 1.19038 0.84120 1.37734 0.94055 0.90648 1.24752 0.97456 1.01860 0.96507 1.69765 1.22507 1.51773 1.13182 0.86157 0.82382 0.77773 0.79219 1.21574 1.21311 1.21167 1.21686 0.86062 0.97753 0.94402 0.88455 0.87800 0.90247 0.92290 0.90775 0.88194 0.91895 0.89429 0.89037 0.76163 0.90659 0.91662 0.97228 0.87388 0.93718 0.95198 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 13.93 29.02 0.40 -1.55 16 2 C -0.12 -1.45 4.49 -101.06 -0.45 -1.91 16 3 C -0.12 -1.62 7.96 36.01 0.29 -1.33 16 4 C 0.12 1.42 3.43 -27.10 -0.09 1.32 16 5 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 6 O -0.36 -4.33 10.55 -35.23 -0.37 -4.70 16 7 C 0.04 0.41 7.63 37.93 0.29 0.70 16 8 C -0.16 -1.68 6.29 -25.16 -0.16 -1.84 16 9 C -0.14 -1.68 3.47 -90.21 -0.31 -1.99 16 10 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.53 8.38 3.87 -10.99 -0.04 8.33 16 12 O -0.55 -10.42 16.58 5.56 0.09 -10.33 16 13 N -0.71 -11.09 2.51 -52.03 -0.13 -11.22 16 14 C 0.13 2.33 2.59 -66.09 -0.17 2.16 16 15 H 0.09 1.53 7.31 -51.93 -0.38 1.15 16 16 C -0.15 -2.75 6.65 -24.46 -0.16 -2.91 16 17 C 0.15 3.52 5.88 -2.40 -0.01 3.50 16 18 N -0.60 -15.14 3.39 -169.93 -0.58 -15.72 16 19 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 20 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.29 10.08 55.49 0.56 -25.73 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.13 2.77 6.98 -3.06 -0.02 2.74 16 28 H 0.10 0.89 7.91 -52.48 -0.42 0.47 16 29 H 0.10 1.04 8.05 -52.49 -0.42 0.62 16 30 H 0.08 1.17 5.07 -51.93 -0.26 0.90 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.17 6.55 -51.93 -0.34 0.83 16 37 H 0.40 6.09 6.94 -40.82 -0.28 5.81 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.11 2.85 5.86 -51.93 -0.30 2.54 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -31.15 342.39 -7.91 -39.07 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.92 Total: 6.02 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.70 Total: 0.56 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.15 Total: -52.67 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.28 Total: -15.03 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.15 -7.91 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015826301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.223 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds