Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99807 * 2 1 4 4 C 1.50702 * 120.00240 * 180.02562 * 2 1 3 5 5 H 1.08997 * 110.32956 * 346.46400 * 4 2 1 6 6 O 1.44427 * 110.46631 * 224.14330 * 4 2 1 7 7 C 1.44416 * 105.27251 * 200.60917 * 6 4 2 8 8 C 1.54481 * 104.80620 * 40.51400 * 7 6 4 9 9 C 1.54484 * 110.36992 * 108.70958 * 4 2 1 10 10 H 1.08997 * 110.51052 * 261.70126 * 9 4 2 11 11 C 1.50695 * 110.51365 * 24.27698 * 9 4 2 12 12 O 1.21281 * 120.00134 * 257.55899 * 11 9 4 13 13 N 1.34781 * 120.00051 * 77.55482 * 11 9 4 14 14 C 1.46498 * 119.99840 * 175.09433 * 13 11 9 15 15 H 1.08993 * 110.78440 * 36.78635 * 14 13 11 16 16 C 1.55154 * 110.71814 * 160.02819 * 14 13 11 17 17 C 1.55133 * 101.48874 * 82.69479 * 16 14 13 18 18 N 1.47430 * 104.71956 * 37.29489 * 17 16 14 19 19 C 1.36934 * 125.64638 * 155.82167 * 18 17 16 20 20 H 1.08004 * 120.00112 * 179.69101 * 19 18 17 21 21 C 1.38809 * 120.00208 * 359.68807 * 19 18 17 22 22 N 1.31619 * 119.99980 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00163 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46958 * 180.02562 * 23 21 19 25 25 H 1.48493 * 109.47059 * 300.00081 * 23 21 19 26 26 H 1.48498 * 109.46812 * 60.00246 * 23 21 19 27 27 C 1.47018 * 108.70502 * 335.55374 * 18 17 16 28 28 H 1.08003 * 120.00069 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00267 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47267 * 275.63685 * 3 2 1 31 31 H 1.09003 * 109.46722 * 35.64326 * 3 2 1 32 32 H 1.09006 * 109.47118 * 155.63790 * 3 2 1 33 33 H 1.08998 * 110.37467 * 159.34556 * 7 6 4 34 34 H 1.08998 * 110.37527 * 281.57034 * 7 6 4 35 35 H 1.08997 * 110.51283 * 217.37406 * 8 7 6 36 36 H 1.09000 * 110.50929 * 94.66298 * 8 7 6 37 37 H 0.97000 * 119.99692 * 355.10107 * 13 11 9 38 38 H 1.09000 * 111.00194 * 200.93225 * 16 14 13 39 39 H 1.08994 * 111.00722 * 324.74768 * 16 14 13 40 40 H 1.08999 * 110.49575 * 278.45865 * 17 16 14 41 41 H 1.08997 * 110.34479 * 156.05567 * 17 16 14 42 42 H 0.97005 * 120.00168 * 179.97438 * 22 21 19 43 43 H 1.08995 * 109.88340 * 120.70082 * 27 18 17 44 44 H 1.09000 * 109.88258 * 241.87282 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3923 -2.1300 0.2383 6 8 3.1569 -1.2573 0.9418 7 6 4.0682 -2.2952 0.5201 8 6 4.0838 -2.2043 -1.0219 9 6 2.7347 -1.5379 -1.3724 10 1 2.1268 -2.2016 -1.9873 11 6 2.9614 -0.2261 -2.0787 12 8 2.2211 0.1149 -2.9768 13 7 3.9869 0.5681 -1.7124 14 6 4.2727 1.7904 -2.4677 15 1 3.3493 2.2646 -2.7999 16 6 5.1207 2.7743 -1.6192 17 6 6.5520 2.2179 -1.8394 18 7 6.5712 1.7800 -3.2470 19 6 7.6880 1.6599 -4.0302 20 1 7.5969 1.3247 -5.0529 21 6 8.9372 1.9690 -3.5099 22 7 9.0483 2.3770 -2.2635 23 14 10.4607 1.8059 -4.5785 24 1 11.6600 2.1927 -3.7930 25 1 10.5990 0.3986 -5.0317 26 1 10.3340 2.6963 -5.7602 27 6 5.1935 1.4874 -3.6686 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 2.1577 1.6703 -1.0226 31 1 1.5217 2.0374 0.5989 32 1 3.0559 1.1518 0.4239 33 1 5.0648 -2.1111 0.9212 34 1 3.7055 -3.2719 0.8406 35 1 4.1442 -3.1994 -1.4626 36 1 4.9148 -1.5850 -1.3595 37 1 4.5356 0.3303 -0.9487 38 1 5.0316 3.7929 -1.9969 39 1 4.8409 2.7241 -0.5670 40 1 6.7391 1.3729 -1.1767 41 1 7.2923 3.0008 -1.6756 42 1 9.9213 2.5927 -1.8997 43 1 4.9218 2.1208 -4.5130 44 1 5.1061 0.4372 -3.9470 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015826301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -44.412222 kcal Electronic energy + Delta-G solvation = -25476.612270 eV Core-core repulsion = 22008.793062 eV Total energy + Delta-G solvation = -3467.819209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96755 -39.87787 -38.66705 -36.03701 -35.49037 -33.93369 -32.95644 -30.91231 -29.74588 -28.99890 -28.03770 -26.51044 -24.77083 -23.27962 -22.12039 -21.86029 -21.03776 -19.87660 -18.92189 -17.88400 -17.77323 -17.11626 -16.82350 -16.65140 -16.15534 -15.97877 -15.63079 -15.36146 -14.78365 -14.48000 -14.39491 -14.10160 -13.82417 -13.62794 -13.41258 -13.38653 -13.02693 -12.91314 -12.77399 -12.63111 -12.43694 -12.33050 -12.11854 -12.09126 -12.02520 -11.87403 -11.79978 -11.44713 -10.87283 -10.74538 -10.69134 -10.09939 -9.87439 -8.89273 -7.77508 -5.21591 1.17727 1.46870 1.49170 1.55780 1.59642 2.21919 2.49469 2.97554 3.32194 3.45072 3.53194 3.68410 3.74493 3.79523 3.98466 4.07012 4.08575 4.14382 4.25745 4.30114 4.50002 4.60211 4.64095 4.72161 4.73215 4.81296 4.85927 4.89059 4.90380 4.96903 5.01656 5.02352 5.04093 5.18277 5.43961 5.58816 5.62586 5.63106 5.72927 5.80618 5.91941 6.31537 6.58706 7.11371 7.24227 7.77290 8.40881 9.23443 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023296 B = 0.004449 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.647986 B = 6291.878746 C = 6602.891567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 C -0.120 4.120 4 C 0.129 3.871 5 H 0.109 0.891 6 O -0.378 6.378 7 C 0.044 3.956 8 C -0.154 4.154 9 C -0.135 4.135 10 H 0.127 0.873 11 C 0.534 3.466 12 O -0.583 6.583 13 N -0.700 5.700 14 C 0.147 3.853 15 H 0.094 0.906 16 C -0.133 4.133 17 C 0.157 3.843 18 N -0.619 5.619 19 C -0.244 4.244 20 H 0.073 0.927 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.978 3.022 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.127 3.873 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.406 0.594 38 H 0.081 0.919 39 H 0.093 0.907 40 H -0.005 1.005 41 H 0.076 0.924 42 H 0.248 0.752 43 H 0.025 0.975 44 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 -8.570 8.376 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.177 4.177 4 C 0.071 3.929 5 H 0.126 0.874 6 O -0.297 6.297 7 C -0.033 4.033 8 C -0.192 4.192 9 C -0.157 4.157 10 H 0.145 0.855 11 C 0.322 3.678 12 O -0.463 6.463 13 N -0.351 5.351 14 C 0.041 3.959 15 H 0.112 0.888 16 C -0.172 4.172 17 C 0.033 3.967 18 N -0.346 5.346 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.593 5.593 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.206 1.206 27 C 0.001 3.999 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.013 0.987 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -14.893 -8.151 7.924 18.736 hybrid contribution 1.351 -0.228 -0.687 1.533 sum -13.542 -8.378 7.237 17.492 Atomic orbital electron populations 1.23879 0.94479 1.03363 0.98802 1.21636 0.95832 0.94976 1.02307 1.21072 1.00611 0.94390 1.01642 1.21984 0.89230 0.96308 0.85342 0.87375 1.89190 1.33374 1.56222 1.50901 1.23621 0.95061 0.92375 0.92215 1.23158 0.95041 1.03036 0.97929 1.22957 0.99804 0.94217 0.98694 0.85494 1.20529 0.79291 0.85827 0.82150 1.90665 1.47322 1.75362 1.32980 1.46029 1.32345 1.23791 1.32931 1.21676 0.97082 0.85529 0.91573 0.88828 1.23199 0.95535 0.98321 1.00134 1.21779 0.94254 0.97146 0.83556 1.44732 1.01266 1.78307 1.10265 1.19344 0.85454 1.37980 0.94480 0.90956 1.25523 1.00008 1.01795 0.97791 1.70004 1.22669 1.52215 1.14386 0.85172 0.78739 0.77833 0.77672 1.21598 1.20709 1.20573 1.21769 0.85428 0.96712 0.96018 0.86429 0.87390 0.92319 0.91451 0.91557 0.88042 0.89197 0.87267 0.91648 0.75702 0.90058 0.88823 0.98673 0.90605 0.94193 0.95725 0.97168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 13.93 67.79 0.94 -2.28 16 2 C -0.15 -3.33 4.49 -16.48 -0.07 -3.41 16 3 C -0.12 -2.98 7.96 71.24 0.57 -2.42 16 4 C 0.13 2.61 3.43 30.35 0.10 2.71 16 5 H 0.11 1.65 7.90 -2.39 -0.02 1.63 16 6 O -0.38 -8.25 10.55 -148.98 -1.57 -9.82 16 7 C 0.04 0.74 7.63 72.49 0.55 1.29 16 8 C -0.15 -3.02 6.29 31.61 0.20 -2.82 16 9 C -0.14 -3.04 3.47 -10.53 -0.04 -3.07 16 10 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 11 C 0.53 16.39 3.87 87.65 0.34 16.73 16 12 O -0.58 -21.98 16.58 -3.03 -0.05 -22.03 16 13 N -0.70 -21.80 2.51 -436.92 -1.10 -22.90 16 14 C 0.15 5.21 2.59 46.18 0.12 5.33 16 15 H 0.09 3.26 7.31 -2.39 -0.02 3.25 16 16 C -0.13 -4.71 6.65 32.06 0.21 -4.50 16 17 C 0.16 7.41 5.88 86.93 0.51 7.92 16 18 N -0.62 -31.85 3.39 -691.53 -2.35 -34.19 16 19 C -0.24 -13.77 10.27 84.03 0.86 -12.90 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 22 N -0.94 -54.74 10.08 21.65 0.22 -54.52 16 23 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 C 0.13 5.61 6.98 86.73 0.61 6.21 16 28 H 0.12 1.73 7.91 -2.91 -0.02 1.71 16 29 H 0.11 1.93 8.05 -2.91 -0.02 1.91 16 30 H 0.06 1.68 5.07 -2.39 -0.01 1.67 16 31 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 32 H 0.07 1.70 6.47 -2.38 -0.02 1.69 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.64 6.55 -2.39 -0.02 1.63 16 37 H 0.41 12.21 6.94 -92.71 -0.64 11.57 16 38 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.08 4.11 5.86 -2.39 -0.01 4.09 16 42 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 43 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.01 0.48 8.04 -2.39 -0.02 0.46 16 Total: -1.00 -67.99 342.39 2.91 -65.09 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.35 Total: 24.96 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.37 Total: 6.01 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.22 Total: -111.61 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.62 Total: -31.86 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.99 2.91 -65.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015826301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.673 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds