Wall clock time and date at job start Tue Mar 31 2020 07:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99700 * 2 1 4 4 C 1.50697 * 119.99958 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.41594 * 127.32342 * 4 2 1 6 6 O 1.44428 * 110.37419 * 5.01563 * 4 2 1 7 7 C 1.44423 * 105.27602 * 200.65282 * 6 4 2 8 8 C 1.54479 * 104.80116 * 40.50735 * 7 6 4 9 9 C 1.54479 * 110.37828 * 249.63071 * 4 2 1 10 10 H 1.09000 * 110.51146 * 261.46137 * 9 4 2 11 11 C 1.50702 * 110.62235 * 24.10940 * 9 4 2 12 12 O 1.21280 * 120.00217 * 58.81963 * 11 9 4 13 13 N 1.34779 * 119.99832 * 238.80870 * 11 9 4 14 14 C 1.47018 * 125.64882 * 359.70186 * 13 11 9 15 15 C 1.54333 * 107.26852 * 178.84493 * 14 13 11 16 16 C 1.55156 * 103.01853 * 338.14072 * 15 14 13 17 17 H 1.09000 * 111.00355 * 277.23362 * 16 15 14 18 18 N 1.46503 * 111.00686 * 153.38100 * 16 15 14 19 19 C 1.36931 * 119.99913 * 92.80019 * 18 16 15 20 20 H 1.08004 * 120.00309 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00158 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99695 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00460 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47169 * 89.99601 * 23 21 19 25 25 H 1.48493 * 109.47396 * 209.99991 * 23 21 19 26 26 H 1.48503 * 109.47158 * 330.00298 * 23 21 19 27 27 C 1.47425 * 125.64760 * 180.02562 * 13 11 9 28 28 H 1.08001 * 120.00065 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00115 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46722 * 241.10027 * 3 2 1 31 31 H 1.08992 * 109.47654 * 1.10522 * 3 2 1 32 32 H 1.09006 * 109.47003 * 121.11133 * 3 2 1 33 33 H 1.08998 * 110.36987 * 281.67715 * 7 6 4 34 34 H 1.09001 * 110.46692 * 159.39087 * 7 6 4 35 35 H 1.09001 * 110.50839 * 217.37147 * 8 7 6 36 36 H 1.09004 * 110.62146 * 94.72883 * 8 7 6 37 37 H 1.09007 * 109.88269 * 298.39009 * 14 13 11 38 38 H 1.09004 * 109.88357 * 59.55164 * 14 13 11 39 39 H 1.08997 * 110.85059 * 219.67156 * 15 14 13 40 40 H 1.08999 * 110.66643 * 96.52010 * 15 14 13 41 41 H 0.96995 * 119.99537 * 272.80331 * 18 16 15 42 42 H 0.97001 * 120.00358 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.36892 * 322.93368 * 27 13 11 44 44 H 1.09001 * 110.36409 * 85.25720 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.7901 -1.3251 -0.8118 6 8 1.1469 -2.4150 -0.1173 7 6 1.8708 -3.5609 0.3812 8 6 2.6393 -3.0364 1.6144 9 6 2.7690 -1.5183 1.3582 10 1 3.8182 -1.2302 1.2929 11 6 2.0754 -0.7382 2.4451 12 8 0.9043 -0.9427 2.6855 13 7 2.7565 0.1867 3.1503 14 6 4.1745 0.5295 2.9687 15 6 4.5059 1.6549 3.9714 16 6 3.1150 2.2703 4.2783 17 1 2.8275 2.9885 3.5105 18 7 3.0957 2.8885 5.6063 19 6 3.3816 4.2204 5.7457 20 1 3.6209 4.8152 4.8766 21 6 3.3638 4.8062 7.0041 22 7 3.0717 4.0814 8.0632 23 14 3.7531 6.6232 7.1942 24 1 2.5000 7.4123 7.0822 25 1 4.3705 6.8607 8.5237 26 1 4.6981 7.0412 6.1277 27 6 2.2046 1.0174 4.2360 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.6752 1.3714 -0.8997 31 1 1.3554 2.1335 0.0198 32 1 2.7050 1.3543 0.8799 33 1 2.5677 -3.9269 -0.3728 34 1 1.1791 -4.3513 0.6730 35 1 3.6244 -3.4990 1.6757 36 1 2.0735 -3.2228 2.5272 37 1 4.7957 -0.3434 3.1697 38 1 4.3436 0.8809 1.9508 39 1 5.1643 2.3964 3.5188 40 1 4.9541 1.2444 4.8762 41 1 2.8805 2.3544 6.3868 42 1 3.0589 4.4907 8.9426 43 1 1.1770 1.3027 4.0106 44 1 2.2513 0.4821 5.1844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019498770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:04 Heat of formation + Delta-G solvation = -40.666755 kcal Electronic energy + Delta-G solvation = -24795.619028 eV Core-core repulsion = 21327.962235 eV Total energy + Delta-G solvation = -3467.656793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77964 -38.85797 -37.02169 -35.04783 -34.15788 -32.54533 -31.38808 -29.56263 -28.98246 -27.74648 -27.08629 -24.45118 -23.39625 -22.84518 -21.77478 -20.11490 -19.40056 -18.27580 -17.38910 -17.37516 -16.28365 -16.15490 -15.72469 -15.55213 -14.71211 -14.47246 -14.23673 -13.90481 -13.56387 -13.29591 -13.17239 -13.02093 -12.82296 -12.47845 -12.38398 -12.08948 -11.86326 -11.79105 -11.60135 -11.35989 -11.32500 -11.18996 -10.95322 -10.84603 -10.73664 -10.30831 -10.09553 -10.01970 -9.80086 -9.52349 -8.99434 -8.95751 -8.35713 -7.08129 -5.85150 -3.15858 2.29290 2.75608 3.12605 3.39175 3.44554 3.46073 3.64893 4.26367 4.46662 4.52258 4.61063 4.84874 4.87744 5.01132 5.03943 5.11158 5.16135 5.23409 5.28579 5.37096 5.45830 5.50517 5.54921 5.56162 5.57618 5.70204 5.75145 5.79757 5.94748 6.03334 6.07058 6.12193 6.24561 6.34822 6.50045 6.54249 6.61323 6.71047 6.87120 7.00765 7.62377 7.75821 8.31934 8.39021 9.43816 9.97791 10.32598 11.37018 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.003545 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.019274 B = 7896.833812 C = 8185.389903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C -0.116 4.116 4 C 0.136 3.864 5 H 0.082 0.918 6 O -0.358 6.358 7 C 0.049 3.951 8 C -0.139 4.139 9 C -0.136 4.136 10 H 0.100 0.900 11 C 0.541 3.459 12 O -0.529 6.529 13 N -0.613 5.613 14 C 0.099 3.901 15 C -0.156 4.156 16 C 0.173 3.827 17 H 0.066 0.934 18 N -0.714 5.714 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.099 3.901 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.075 0.925 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -13.173 -17.186 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C -0.173 4.173 4 C 0.078 3.922 5 H 0.100 0.900 6 O -0.277 6.277 7 C -0.028 4.028 8 C -0.177 4.177 9 C -0.157 4.157 10 H 0.118 0.882 11 C 0.329 3.671 12 O -0.404 6.404 13 N -0.348 5.348 14 C -0.024 4.024 15 C -0.197 4.197 16 C 0.061 3.939 17 H 0.084 0.916 18 N -0.354 5.354 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.025 4.025 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.643 -13.126 -17.158 21.666 hybrid contribution 0.594 0.775 0.632 1.163 sum 2.236 -12.351 -16.526 20.753 Atomic orbital electron populations 1.23681 0.95251 1.01991 0.96616 1.21346 0.95909 0.93576 1.04743 1.20848 1.00509 0.93857 1.02058 1.21538 0.90289 0.86518 0.93887 0.90041 1.89151 1.37067 1.16838 1.84614 1.23359 0.95607 0.89866 0.93972 1.22909 1.01754 0.92429 1.00650 1.22733 1.01205 0.96502 0.95299 0.88208 1.19666 0.86565 0.79253 0.81651 1.90707 1.15741 1.66174 1.67824 1.48477 1.11725 1.38275 1.36288 1.22122 0.81745 0.98571 0.99980 1.23424 1.01651 0.96348 0.98272 1.21284 0.90946 0.91436 0.90234 0.91613 1.42264 1.82891 1.08268 1.01939 1.19222 1.40029 0.85454 0.92966 0.90973 1.24771 1.02126 0.98176 0.95512 1.69662 1.54842 1.35125 0.98107 0.86173 0.77910 0.84930 0.77037 1.21596 1.21719 1.20670 1.22574 0.98815 0.91788 0.89277 0.88737 0.87448 0.91899 0.91511 0.91240 0.92137 0.88793 0.89824 0.89719 0.92188 0.91974 0.90720 0.90634 0.77945 0.93330 0.90682 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 12.92 29.01 0.37 -1.53 16 2 C -0.16 -1.99 3.71 -101.07 -0.38 -2.37 16 3 C -0.12 -1.31 9.96 36.00 0.36 -0.96 16 4 C 0.14 1.57 3.50 -27.11 -0.09 1.48 16 5 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 6 O -0.36 -4.56 9.81 -35.23 -0.35 -4.91 16 7 C 0.05 0.46 7.63 37.93 0.29 0.75 16 8 C -0.14 -1.37 6.64 -25.17 -0.17 -1.53 16 9 C -0.14 -1.54 3.18 -90.21 -0.29 -1.83 16 10 H 0.10 0.91 6.71 -51.93 -0.35 0.56 16 11 C 0.54 8.22 4.59 -10.98 -0.05 8.17 16 12 O -0.53 -10.01 15.76 5.56 0.09 -9.92 16 13 N -0.61 -9.16 2.80 -170.50 -0.48 -9.64 16 14 C 0.10 1.24 5.53 -3.06 -0.02 1.22 16 15 C -0.16 -2.42 6.64 -24.89 -0.17 -2.58 16 16 C 0.17 3.26 3.72 -65.77 -0.24 3.01 16 17 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 18 N -0.71 -17.13 5.24 -51.34 -0.27 -17.40 16 19 C -0.25 -6.55 9.96 -15.06 -0.15 -6.70 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 23 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.10 1.74 6.55 -2.52 -0.02 1.73 16 28 H 0.09 1.20 7.83 -52.49 -0.41 0.79 16 29 H 0.11 1.58 6.90 -52.49 -0.36 1.22 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 32 H 0.07 0.83 5.34 -51.93 -0.28 0.56 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.99 7.57 -51.93 -0.39 0.60 16 37 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 38 H 0.06 0.66 6.79 -51.93 -0.35 0.30 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.39 9.94 7.76 -40.82 -0.32 9.63 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 44 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -31.70 349.64 -7.72 -39.42 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.04 Total: 8.62 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.64 Total: -1.50 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.02 Total: -53.73 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.26 Total: -14.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.70 -7.72 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019498770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.248 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds