Wall clock time and date at job start Tue Mar 31 2020 07:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00169 * 2 1 4 4 H 1.08997 * 109.47825 * 359.97438 * 3 2 1 5 5 O 1.42905 * 109.49103 * 239.94941 * 3 2 1 6 6 C 1.42902 * 114.09583 * 178.85244 * 5 3 2 7 7 C 1.53090 * 109.41282 * 61.16326 * 6 5 3 8 8 C 1.53176 * 109.16668 * 302.38812 * 7 6 5 9 9 C 1.53096 * 109.47739 * 120.00380 * 3 2 1 10 10 H 1.09004 * 109.51858 * 57.69814 * 9 3 2 11 11 C 1.50690 * 109.52425 * 297.50892 * 9 3 2 12 12 O 1.21290 * 120.00164 * 0.02562 * 11 9 3 13 13 N 1.34774 * 120.00115 * 180.02562 * 11 9 3 14 14 C 1.46506 * 120.00097 * 179.97438 * 13 11 9 15 15 H 1.09002 * 112.84903 * 25.33347 * 14 13 11 16 16 C 1.53780 * 113.61212 * 156.52882 * 14 13 11 17 17 C 1.53786 * 87.08010 * 139.98378 * 16 14 13 18 18 H 1.08995 * 113.61691 * 219.93488 * 17 16 14 19 19 N 1.46494 * 113.61499 * 89.11478 * 17 16 14 20 20 C 1.36942 * 120.00042 * 155.00104 * 19 17 16 21 21 H 1.08003 * 119.99753 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00130 * 180.02562 * 20 19 17 23 23 N 1.31623 * 120.00053 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47252 * 89.99711 * 24 22 20 26 26 H 1.48497 * 109.46853 * 209.99890 * 24 22 20 27 27 H 1.48505 * 109.47054 * 329.99908 * 24 22 20 28 28 C 1.53786 * 113.61507 * 254.13721 * 14 13 11 29 29 H 1.08004 * 120.00391 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00010 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99614 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47624 * 181.14087 * 6 5 3 33 33 H 1.09000 * 109.48246 * 301.17851 * 6 5 3 34 34 H 1.09005 * 109.52564 * 62.29704 * 7 6 5 35 35 H 1.08998 * 109.52249 * 182.41867 * 7 6 5 36 36 H 1.09005 * 109.54225 * 297.11519 * 8 7 6 37 37 H 1.08991 * 109.54673 * 176.84737 * 8 7 6 38 38 H 0.97000 * 120.00097 * 0.02562 * 13 11 9 39 39 H 1.09003 * 113.61433 * 254.52778 * 16 14 13 40 40 H 1.09001 * 113.61520 * 25.35316 * 16 14 13 41 41 H 0.96998 * 120.00413 * 334.99940 * 19 17 16 42 42 H 0.96991 * 119.99885 * 179.97438 * 23 22 20 43 43 H 1.08997 * 113.61251 * 334.56643 * 28 14 13 44 44 H 1.09002 * 113.60873 * 105.47228 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1336 -0.0005 5 8 2.8862 1.3807 -1.1661 6 6 3.6285 2.5966 -1.2785 7 6 4.5716 2.7296 -0.0800 8 6 3.7511 2.6875 1.2127 9 6 2.9438 1.3862 1.2499 10 1 3.6250 0.5355 1.2716 11 6 2.0742 1.3681 2.4804 12 8 0.8684 1.2968 2.3699 13 7 2.6361 1.4312 3.7038 14 6 1.7906 1.4141 4.9001 15 1 0.8309 0.9251 4.7332 16 6 2.5197 0.9254 6.1628 17 6 1.7673 2.0268 6.9282 18 1 2.3771 2.5331 7.6764 19 7 0.4680 1.5960 7.4500 20 6 -0.0768 2.2268 8.5365 21 1 0.4513 3.0423 9.0084 22 6 -1.3077 1.8183 9.0314 23 7 -1.9515 0.8248 8.4559 24 14 -2.0512 2.6793 10.5130 25 1 -2.8912 3.8152 10.0555 26 1 -2.8896 1.7188 11.2744 27 1 -0.9638 3.1884 11.3869 28 6 1.6725 2.7832 5.5906 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 4.2110 2.5828 -2.1997 33 1 2.9408 3.4421 -1.2956 34 1 5.2858 1.9061 -0.0852 35 1 5.1076 3.6767 -0.1417 36 1 3.0714 3.5392 1.2411 37 1 4.4213 2.7255 2.0714 38 1 3.6004 1.4886 3.7922 39 1 2.2411 -0.0843 6.4646 40 1 3.5989 1.0745 6.1291 41 1 -0.0064 0.8639 7.0260 42 1 -2.8114 0.5392 8.8019 43 1 2.5195 3.4424 5.4008 44 1 0.7109 3.2711 5.4311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020168055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:40 Heat of formation + Delta-G solvation = -34.607959 kcal Electronic energy + Delta-G solvation = -23974.755762 eV Core-core repulsion = 20507.361698 eV Total energy + Delta-G solvation = -3467.394064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59599 -39.09762 -37.75749 -34.48339 -33.94691 -33.77364 -32.49455 -30.45077 -29.58592 -25.35792 -25.11665 -25.10284 -23.91804 -22.61366 -21.15493 -20.09124 -19.99062 -18.79511 -17.42494 -17.31558 -16.52389 -16.17575 -15.66343 -15.10795 -14.95834 -14.74458 -14.45392 -14.11691 -13.98324 -13.59928 -13.26445 -13.00570 -12.72388 -12.67947 -12.12381 -12.00237 -11.93100 -11.77160 -11.61209 -11.37057 -11.15951 -10.87819 -10.80310 -10.60263 -10.26212 -10.16976 -9.90607 -9.85423 -9.72814 -9.63158 -9.12218 -8.91435 -8.66187 -7.01118 -5.79727 -3.09870 2.26098 2.76114 3.26048 3.42675 3.47434 3.49422 3.77960 4.38409 4.43163 4.50486 4.55632 4.65495 4.85590 4.95568 5.01599 5.10195 5.21403 5.23251 5.25085 5.38990 5.39955 5.46906 5.48112 5.54404 5.62858 5.66951 5.87016 5.88309 5.96104 5.99841 6.08139 6.22738 6.37647 6.62058 6.64856 6.72528 6.78102 6.79032 7.01362 7.03753 7.67281 7.69884 8.38380 8.39660 9.49181 10.05540 10.39487 11.42463 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.003088 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.789112 B = 9064.518187 C = 9655.583426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.144 3.856 4 H 0.069 0.931 5 O -0.375 6.375 6 C 0.057 3.943 7 C -0.154 4.154 8 C -0.114 4.114 9 C -0.136 4.136 10 H 0.103 0.897 11 C 0.516 3.484 12 O -0.528 6.528 13 N -0.717 5.717 14 C 0.127 3.873 15 H 0.112 0.888 16 C -0.164 4.164 17 C 0.172 3.828 18 H 0.068 0.932 19 N -0.705 5.705 20 C -0.246 4.246 21 H 0.073 0.927 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.183 4.183 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.394 0.606 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.067 0.933 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.266 2.004 -18.445 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.086 3.914 4 H 0.087 0.913 5 O -0.294 6.294 6 C -0.020 4.020 7 C -0.192 4.192 8 C -0.152 4.152 9 C -0.158 4.158 10 H 0.121 0.879 11 C 0.301 3.699 12 O -0.403 6.403 13 N -0.367 5.367 14 C 0.023 3.977 15 H 0.130 0.870 16 C -0.204 4.204 17 C 0.058 3.942 18 H 0.086 0.914 19 N -0.344 5.344 20 C -0.377 4.377 21 H 0.091 0.909 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.226 4.226 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.228 0.772 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.302 1.882 -18.468 23.435 hybrid contribution -0.036 0.448 0.937 1.040 sum 14.266 2.330 -17.531 22.722 Atomic orbital electron populations 1.23777 0.95590 1.01973 0.96048 1.22323 0.95620 0.96313 1.03382 1.20844 0.90207 0.97235 0.83119 0.91309 1.87989 1.60185 1.38668 1.42540 1.22602 0.93716 0.87365 0.98282 1.22203 0.98829 1.03145 0.95030 1.21598 0.98680 0.96337 0.98581 1.21966 0.98579 1.00695 0.94543 0.87890 1.20280 0.88857 0.76277 0.84459 1.90746 1.14578 1.48468 1.86556 1.46133 1.10110 1.74622 1.05871 1.22615 0.95188 0.98523 0.81388 0.86993 1.23889 0.99192 1.01349 0.96015 1.20942 0.88490 0.92810 0.91910 0.91424 1.42199 1.17459 1.40253 1.34484 1.19269 1.01066 1.12460 1.04880 0.90945 1.24786 0.97602 0.98649 0.99721 1.69667 1.16024 1.29463 1.42591 0.86163 0.78998 0.78560 0.82284 1.21635 1.21729 1.20688 1.24334 1.01589 0.96306 1.00363 0.88243 0.88334 0.87356 0.88704 0.93085 0.90739 0.90414 0.91051 0.90679 0.77230 0.90903 0.90403 0.77972 0.93355 0.91404 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 13.11 29.01 0.38 -1.36 16 2 C -0.16 -1.99 8.05 -36.03 -0.29 -2.28 16 3 C 0.14 1.71 2.17 -27.83 -0.06 1.64 16 4 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 5 O -0.37 -4.19 10.39 -35.23 -0.37 -4.56 16 6 C 0.06 0.46 6.84 37.20 0.25 0.71 16 7 C -0.15 -1.05 6.14 -26.59 -0.16 -1.21 16 8 C -0.11 -0.95 5.19 -26.55 -0.14 -1.08 16 9 C -0.14 -1.44 2.22 -91.63 -0.20 -1.65 16 10 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 11 C 0.52 7.22 6.89 -10.99 -0.08 7.15 16 12 O -0.53 -9.53 13.64 5.55 0.08 -9.45 16 13 N -0.72 -9.23 5.27 -53.01 -0.28 -9.51 16 14 C 0.13 2.07 4.09 -67.11 -0.27 1.80 16 15 H 0.11 2.24 7.50 -51.93 -0.39 1.85 16 16 C -0.16 -2.58 7.58 -25.92 -0.20 -2.78 16 17 C 0.17 3.34 4.57 -67.03 -0.31 3.03 16 18 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 19 N -0.71 -17.68 5.31 -52.55 -0.28 -17.96 16 20 C -0.25 -6.81 9.97 -15.06 -0.15 -6.96 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C -0.18 -3.20 7.69 -25.82 -0.20 -3.40 16 29 H 0.10 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.10 1.29 7.83 -52.49 -0.41 0.88 16 31 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.52 7.69 -51.93 -0.40 0.12 16 38 H 0.39 3.81 8.22 -40.82 -0.34 3.47 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.39 10.36 7.90 -40.82 -0.32 10.04 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -32.40 357.10 -8.58 -40.98 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.29 Total: 12.10 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.52 Total: -6.80 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.17 Total: -55.01 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.29 Total: -14.01 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.40 -8.58 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020168055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.369 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds