Wall clock time and date at job start Tue Mar 31 2020 07:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00169 * 2 1 4 4 H 1.08997 * 109.47825 * 359.97438 * 3 2 1 5 5 O 1.42905 * 109.49103 * 239.94941 * 3 2 1 6 6 C 1.42902 * 114.09583 * 178.85244 * 5 3 2 7 7 C 1.53090 * 109.41282 * 61.16326 * 6 5 3 8 8 C 1.53176 * 109.16668 * 302.38812 * 7 6 5 9 9 C 1.53096 * 109.47739 * 120.00380 * 3 2 1 10 10 H 1.09004 * 109.51858 * 57.69814 * 9 3 2 11 11 C 1.50690 * 109.52425 * 297.50892 * 9 3 2 12 12 O 1.21290 * 120.00164 * 0.02562 * 11 9 3 13 13 N 1.34774 * 120.00115 * 180.02562 * 11 9 3 14 14 C 1.46506 * 120.00097 * 179.97438 * 13 11 9 15 15 H 1.09002 * 112.84903 * 25.33347 * 14 13 11 16 16 C 1.53780 * 113.61212 * 156.52882 * 14 13 11 17 17 C 1.53786 * 87.08010 * 139.98378 * 16 14 13 18 18 H 1.08995 * 113.61691 * 219.93488 * 17 16 14 19 19 N 1.46494 * 113.61499 * 89.11478 * 17 16 14 20 20 C 1.36942 * 120.00042 * 155.00104 * 19 17 16 21 21 H 1.08003 * 119.99753 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00130 * 180.02562 * 20 19 17 23 23 N 1.31623 * 120.00053 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47252 * 89.99711 * 24 22 20 26 26 H 1.48497 * 109.46853 * 209.99890 * 24 22 20 27 27 H 1.48505 * 109.47054 * 329.99908 * 24 22 20 28 28 C 1.53786 * 113.61507 * 254.13721 * 14 13 11 29 29 H 1.08004 * 120.00391 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00010 * 359.97438 * 1 2 3 31 31 H 1.08006 * 119.99614 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47624 * 181.14087 * 6 5 3 33 33 H 1.09000 * 109.48246 * 301.17851 * 6 5 3 34 34 H 1.09005 * 109.52564 * 62.29704 * 7 6 5 35 35 H 1.08998 * 109.52249 * 182.41867 * 7 6 5 36 36 H 1.09005 * 109.54225 * 297.11519 * 8 7 6 37 37 H 1.08991 * 109.54673 * 176.84737 * 8 7 6 38 38 H 0.97000 * 120.00097 * 0.02562 * 13 11 9 39 39 H 1.09003 * 113.61433 * 254.52778 * 16 14 13 40 40 H 1.09001 * 113.61520 * 25.35316 * 16 14 13 41 41 H 0.96998 * 120.00413 * 334.99940 * 19 17 16 42 42 H 0.96991 * 119.99885 * 179.97438 * 23 22 20 43 43 H 1.08997 * 113.61251 * 334.56643 * 28 14 13 44 44 H 1.09002 * 113.60873 * 105.47228 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1336 -0.0005 5 8 2.8862 1.3807 -1.1661 6 6 3.6285 2.5966 -1.2785 7 6 4.5716 2.7296 -0.0800 8 6 3.7511 2.6875 1.2127 9 6 2.9438 1.3862 1.2499 10 1 3.6250 0.5355 1.2716 11 6 2.0742 1.3681 2.4804 12 8 0.8684 1.2968 2.3699 13 7 2.6361 1.4312 3.7038 14 6 1.7906 1.4141 4.9001 15 1 0.8309 0.9251 4.7332 16 6 2.5197 0.9254 6.1628 17 6 1.7673 2.0268 6.9282 18 1 2.3771 2.5331 7.6764 19 7 0.4680 1.5960 7.4500 20 6 -0.0768 2.2268 8.5365 21 1 0.4513 3.0423 9.0084 22 6 -1.3077 1.8183 9.0314 23 7 -1.9515 0.8248 8.4559 24 14 -2.0512 2.6793 10.5130 25 1 -2.8912 3.8152 10.0555 26 1 -2.8896 1.7188 11.2744 27 1 -0.9638 3.1884 11.3869 28 6 1.6725 2.7832 5.5906 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 4.2110 2.5828 -2.1997 33 1 2.9408 3.4421 -1.2956 34 1 5.2858 1.9061 -0.0852 35 1 5.1076 3.6767 -0.1417 36 1 3.0714 3.5392 1.2411 37 1 4.4213 2.7255 2.0714 38 1 3.6004 1.4886 3.7922 39 1 2.2411 -0.0843 6.4646 40 1 3.5989 1.0745 6.1291 41 1 -0.0064 0.8639 7.0260 42 1 -2.8114 0.5392 8.8019 43 1 2.5195 3.4424 5.4008 44 1 0.7109 3.2711 5.4311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020168055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:39 Heat of formation + Delta-G solvation = -57.302719 kcal Electronic energy + Delta-G solvation = -23975.739880 eV Core-core repulsion = 20507.361698 eV Total energy + Delta-G solvation = -3468.378182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61412 -40.25627 -39.00302 -35.80430 -35.07698 -34.87593 -33.91726 -31.76761 -31.03014 -26.60665 -26.48782 -25.99461 -25.49382 -24.01596 -22.06532 -21.05942 -20.94827 -20.22720 -19.35643 -18.38512 -17.60348 -17.12517 -16.78850 -16.60663 -16.08570 -15.81042 -15.74308 -15.33594 -15.09757 -14.90317 -14.56006 -14.25209 -14.09782 -13.61874 -13.44600 -13.30044 -13.25134 -12.82219 -12.79712 -12.62429 -12.52413 -12.17966 -12.05511 -11.89305 -11.81220 -11.70232 -11.41694 -11.31109 -10.91436 -10.76311 -10.66585 -10.11705 -9.91606 -9.03650 -7.96606 -5.26441 1.28633 1.46461 1.48795 1.57122 1.66401 2.18430 2.54602 2.96003 3.35423 3.55196 3.64505 3.67825 3.75181 3.85775 3.91472 4.00947 4.06553 4.17481 4.23287 4.30509 4.35240 4.38196 4.56008 4.67340 4.80573 4.81247 4.83115 4.88665 4.93848 5.00487 5.03483 5.08634 5.16601 5.25840 5.30586 5.33580 5.50691 5.64042 5.71312 5.83290 6.22422 6.25947 6.63693 7.30368 7.34099 8.06923 8.27920 9.26973 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.003088 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.789112 B = 9064.518187 C = 9655.583426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.163 4.163 3 C 0.145 3.855 4 H 0.048 0.952 5 O -0.387 6.387 6 C 0.046 3.954 7 C -0.146 4.146 8 C -0.113 4.113 9 C -0.124 4.124 10 H 0.123 0.877 11 C 0.512 3.488 12 O -0.575 6.575 13 N -0.700 5.700 14 C 0.134 3.866 15 H 0.067 0.933 16 C -0.138 4.138 17 C 0.150 3.850 18 H 0.078 0.922 19 N -0.724 5.724 20 C -0.244 4.244 21 H 0.082 0.918 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.296 1.296 27 H -0.264 1.264 28 C -0.170 4.170 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.416 0.584 39 H 0.059 0.941 40 H 0.126 0.874 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.105 0.895 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.904 3.011 -18.655 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.181 4.181 3 C 0.087 3.913 4 H 0.066 0.934 5 O -0.307 6.307 6 C -0.031 4.031 7 C -0.184 4.184 8 C -0.151 4.151 9 C -0.146 4.146 10 H 0.141 0.859 11 C 0.299 3.701 12 O -0.454 6.454 13 N -0.352 5.352 14 C 0.029 3.971 15 H 0.085 0.915 16 C -0.178 4.178 17 C 0.039 3.961 18 H 0.096 0.904 19 N -0.362 5.362 20 C -0.375 4.375 21 H 0.100 0.900 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.188 1.188 28 C -0.212 4.212 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.254 0.746 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.124 0.876 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.046 2.928 -18.694 26.148 hybrid contribution -1.091 0.183 0.903 1.427 sum 16.956 3.110 -17.791 24.773 Atomic orbital electron populations 1.23844 0.96089 1.01910 0.97102 1.22588 0.95723 0.97321 1.02485 1.20703 0.90340 0.95986 0.84299 0.93427 1.87971 1.60366 1.40294 1.42060 1.22900 0.93934 0.86105 1.00112 1.22176 0.98307 1.04781 0.93108 1.21663 0.98638 0.94171 1.00610 1.21912 0.98006 1.03007 0.91651 0.85938 1.20953 0.88642 0.75003 0.85542 1.90743 1.16965 1.50465 1.87222 1.45863 1.10843 1.74004 1.04474 1.22131 0.94325 0.97469 0.83194 0.91454 1.23731 1.01291 0.99172 0.93564 1.21293 0.86758 0.95102 0.92949 0.90405 1.42406 1.19523 1.39975 1.34248 1.19721 1.00954 1.11921 1.04920 0.89978 1.25645 0.98537 0.99903 1.03015 1.69839 1.16301 1.31583 1.44524 0.85100 0.78258 0.77099 0.79071 1.21699 1.22316 1.18836 1.24191 1.01081 0.96897 0.98982 0.87244 0.89642 0.86210 0.86682 0.93326 0.89737 0.88175 0.92260 0.88341 0.74637 0.92206 0.85580 0.79718 0.94052 0.87625 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 13.11 67.78 0.89 -3.19 16 2 C -0.16 -4.12 8.05 25.65 0.21 -3.92 16 3 C 0.14 3.37 2.17 29.88 0.06 3.44 16 4 H 0.05 1.29 7.68 -2.39 -0.02 1.27 16 5 O -0.39 -8.13 10.39 -148.98 -1.55 -9.68 16 6 C 0.05 0.62 6.84 72.01 0.49 1.11 16 7 C -0.15 -1.43 6.14 30.68 0.19 -1.25 16 8 C -0.11 -1.51 5.19 30.71 0.16 -1.35 16 9 C -0.12 -2.38 2.22 -11.45 -0.03 -2.41 16 10 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 11 C 0.51 13.86 6.89 87.65 0.60 14.46 16 12 O -0.58 -21.46 13.64 -3.06 -0.04 -21.50 16 13 N -0.70 -16.41 5.27 -440.02 -2.32 -18.73 16 14 C 0.13 4.29 4.09 45.52 0.19 4.47 16 15 H 0.07 2.82 7.50 -2.39 -0.02 2.80 16 16 C -0.14 -4.01 7.58 31.12 0.24 -3.77 16 17 C 0.15 5.64 4.57 45.58 0.21 5.85 16 18 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 19 N -0.72 -36.95 5.31 -320.16 -1.70 -38.65 16 20 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -61.12 13.06 21.65 0.28 -60.83 16 24 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 28 C -0.17 -5.72 7.69 31.18 0.24 -5.49 16 29 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.09 2.46 7.83 -2.91 -0.02 2.43 16 31 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.10 0.88 7.69 -2.39 -0.02 0.86 16 38 H 0.42 6.18 8.22 -92.71 -0.76 5.42 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.13 2.49 8.11 -2.39 -0.02 2.47 16 41 H 0.37 20.81 7.90 -92.71 -0.73 20.08 16 42 H 0.25 15.30 8.31 -92.72 -0.77 14.53 16 43 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.25 357.10 0.95 -73.30 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.50 Total: 36.39 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.75 Total: -8.94 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -3.73 Total: -118.22 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.59 Total: -31.18 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -74.25 0.95 -73.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020168055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.994 kcal (2) G-P(sol) polarization free energy of solvation -74.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds