Wall clock time and date at job start Tue Mar 31 2020 07:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00079 * 2 1 4 4 H 1.09000 * 109.48530 * 359.96103 * 3 2 1 5 5 O 1.42903 * 109.47449 * 239.94101 * 3 2 1 6 6 C 1.42907 * 114.09613 * 178.86020 * 5 3 2 7 7 C 1.53091 * 109.41701 * 61.15126 * 6 5 3 8 8 C 1.53178 * 109.16378 * 302.39381 * 7 6 5 9 9 C 1.53083 * 109.48332 * 119.99723 * 3 2 1 10 10 H 1.09007 * 109.57539 * 57.65223 * 9 3 2 11 11 C 1.50706 * 109.52136 * 297.49688 * 9 3 2 12 12 O 1.21271 * 119.99784 * 0.31066 * 11 9 3 13 13 N 1.34779 * 119.99752 * 180.31835 * 11 9 3 14 14 C 1.46504 * 119.99563 * 180.02562 * 13 11 9 15 15 H 1.09003 * 112.90322 * 313.68471 * 14 13 11 16 16 C 1.53776 * 113.61789 * 84.93541 * 14 13 11 17 17 C 1.53784 * 87.08167 * 89.11432 * 16 14 13 18 18 H 1.08990 * 113.61685 * 139.97982 * 17 16 14 19 19 N 1.46507 * 113.61621 * 270.88966 * 17 16 14 20 20 C 1.36939 * 119.99704 * 202.42517 * 19 17 16 21 21 H 1.07995 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99602 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00216 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99749 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47566 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47514 * 119.99975 * 24 22 20 27 27 H 1.48511 * 109.46828 * 239.99822 * 24 22 20 28 28 C 1.53785 * 113.61136 * 182.43767 * 14 13 11 29 29 H 1.08002 * 119.99941 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99888 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99888 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47787 * 301.17162 * 6 5 3 33 33 H 1.09001 * 109.49467 * 181.14349 * 6 5 3 34 34 H 1.09003 * 109.52402 * 182.48864 * 7 6 5 35 35 H 1.08999 * 109.56981 * 62.33150 * 7 6 5 36 36 H 1.08994 * 109.54463 * 297.11318 * 8 7 6 37 37 H 1.09003 * 109.61429 * 176.88915 * 8 7 6 38 38 H 0.96996 * 120.00052 * 359.97438 * 13 11 9 39 39 H 1.09003 * 113.61499 * 334.57117 * 16 14 13 40 40 H 1.08991 * 113.61777 * 203.66188 * 16 14 13 41 41 H 0.96996 * 119.99950 * 22.41775 * 19 17 16 42 42 H 0.96994 * 120.00158 * 180.02562 * 23 22 20 43 43 H 1.08993 * 113.60958 * 156.33590 * 28 14 13 44 44 H 1.08995 * 113.61280 * 25.42732 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1338 -0.0007 5 8 2.8862 1.3803 -1.1661 6 6 3.6288 2.5960 -1.2788 7 6 4.5718 2.7294 -0.0802 8 6 3.7510 2.6878 1.2124 9 6 2.9437 1.3865 1.2499 10 1 3.6247 0.5357 1.2730 11 6 2.0738 1.3688 2.4804 12 8 0.8685 1.2924 2.3699 13 7 2.6354 1.4381 3.7036 14 6 1.7897 1.4203 4.8999 15 1 0.9357 2.0936 4.8257 16 6 1.4187 0.0043 5.3710 17 6 2.7039 0.0334 6.2150 18 1 2.5880 -0.4129 7.2025 19 7 3.8855 -0.4584 5.5020 20 6 4.9646 -0.9241 6.2048 21 1 4.9448 -0.9284 7.2845 22 6 6.0840 -1.3906 5.5292 23 7 6.1079 -1.3857 4.2132 24 14 7.5557 -2.0264 6.4877 25 1 7.2793 -1.9263 7.9433 26 1 7.8058 -3.4452 6.1274 27 1 8.7525 -1.2127 6.1545 28 6 2.5769 1.5660 6.2129 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 2.9412 3.4416 -1.2962 33 1 4.2114 2.5823 -2.2000 34 1 5.1071 3.6769 -0.1415 35 1 5.2865 1.9064 -0.0846 36 1 3.0715 3.5395 1.2404 37 1 4.4201 2.7266 2.0721 38 1 3.5994 1.4990 3.7920 39 1 1.4362 -0.7396 4.5745 40 1 0.5064 -0.0328 5.9662 41 1 3.9034 -0.4543 4.5322 42 1 6.8898 -1.7120 3.7411 43 1 1.9811 1.9558 7.0381 44 1 3.5293 2.0829 6.0959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022099879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:43 Heat of formation + Delta-G solvation = -32.017891 kcal Electronic energy + Delta-G solvation = -24913.302671 eV Core-core repulsion = 21446.020921 eV Total energy + Delta-G solvation = -3467.281750 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40808 -39.07755 -37.54565 -34.15131 -33.69476 -33.54569 -32.33381 -30.22356 -29.71261 -25.24904 -25.02305 -24.85406 -24.04640 -22.46758 -20.84450 -19.82827 -19.70307 -18.74400 -17.45279 -17.04474 -16.22418 -15.90504 -15.46622 -15.01624 -14.80547 -14.49558 -14.34530 -14.09556 -13.86049 -13.51808 -13.24617 -12.95195 -12.73667 -12.42819 -11.97381 -11.81534 -11.70678 -11.48670 -11.42584 -11.05893 -10.94068 -10.90711 -10.82332 -10.39153 -10.31878 -10.18381 -9.84137 -9.65433 -9.55606 -9.46730 -8.99841 -8.91824 -8.47107 -7.07397 -5.87744 -3.16744 2.45249 3.00405 3.37014 3.43565 3.45415 3.48056 4.01839 4.50620 4.68395 4.75626 4.82490 4.95284 5.06534 5.13831 5.21852 5.24543 5.30697 5.41545 5.46197 5.50763 5.52525 5.68470 5.73592 5.82449 5.84858 5.92253 5.96211 5.99187 6.13239 6.15071 6.25069 6.31881 6.40202 6.62848 6.67456 6.82630 6.83666 6.97215 7.11739 7.25963 7.64474 7.95895 8.31755 8.62633 9.43004 9.99308 10.34695 11.34552 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.005036 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.157344 B = 5558.830973 C = 6549.294070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.146 3.854 4 H 0.065 0.935 5 O -0.374 6.374 6 C 0.059 3.941 7 C -0.155 4.155 8 C -0.112 4.112 9 C -0.137 4.137 10 H 0.113 0.887 11 C 0.525 3.475 12 O -0.542 6.542 13 N -0.700 5.700 14 C 0.129 3.871 15 H 0.078 0.922 16 C -0.167 4.167 17 C 0.164 3.836 18 H 0.063 0.937 19 N -0.706 5.706 20 C -0.243 4.243 21 H 0.073 0.927 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.180 4.180 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.409 0.591 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.081 0.919 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 9.357 -7.252 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.088 3.912 4 H 0.083 0.917 5 O -0.293 6.293 6 C -0.017 4.017 7 C -0.193 4.193 8 C -0.150 4.150 9 C -0.159 4.159 10 H 0.131 0.869 11 C 0.311 3.689 12 O -0.420 6.420 13 N -0.353 5.353 14 C 0.024 3.976 15 H 0.096 0.904 16 C -0.207 4.207 17 C 0.052 3.948 18 H 0.081 0.919 19 N -0.346 5.346 20 C -0.374 4.374 21 H 0.091 0.909 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.221 4.221 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.643 9.074 -7.335 13.948 hybrid contribution 1.454 -0.161 0.543 1.561 sum -6.188 8.913 -6.792 12.801 Atomic orbital electron populations 1.23658 0.95531 1.01491 0.97726 1.22409 0.95613 0.96698 1.01806 1.20813 0.90124 0.96829 0.83411 0.91661 1.87987 1.60176 1.38765 1.42400 1.22585 0.93620 0.87126 0.98409 1.22201 0.98955 1.03325 0.94818 1.21567 0.98619 0.95825 0.98983 1.21959 0.98665 1.01413 0.93870 0.86910 1.20218 0.88565 0.75743 0.84379 1.90659 1.14705 1.49737 1.86891 1.45829 1.11033 1.73721 1.04685 1.21673 0.93566 0.97705 0.84640 0.90448 1.23820 0.99079 0.97107 1.00675 1.21182 0.87160 0.91235 0.95238 0.91933 1.42267 1.12783 1.73679 1.05855 1.19344 0.92925 1.34066 0.91100 0.90914 1.24746 0.98520 1.01873 0.95592 1.69649 1.30022 1.52692 1.05552 0.86104 0.82751 0.78297 0.78924 1.20538 1.21840 1.21856 1.24142 1.00014 1.02712 0.95263 0.88501 0.88651 0.87124 0.93391 0.88811 0.90587 0.90270 0.91610 0.90354 0.75443 0.91349 0.89929 0.77973 0.93448 0.90003 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 13.11 29.02 0.38 -1.68 16 2 C -0.15 -2.23 8.04 -36.02 -0.29 -2.52 16 3 C 0.15 2.13 2.17 -27.84 -0.06 2.07 16 4 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 5 O -0.37 -5.32 10.39 -35.23 -0.37 -5.68 16 6 C 0.06 0.65 6.84 37.20 0.25 0.90 16 7 C -0.16 -1.69 6.14 -26.59 -0.16 -1.85 16 8 C -0.11 -1.39 5.18 -26.55 -0.14 -1.53 16 9 C -0.14 -2.04 2.22 -91.63 -0.20 -2.25 16 10 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 11 C 0.53 8.84 6.90 -10.98 -0.08 8.76 16 12 O -0.54 -10.13 13.95 5.57 0.08 -10.05 16 13 N -0.70 -11.74 4.23 -53.01 -0.22 -11.96 16 14 C 0.13 2.13 4.00 -67.12 -0.27 1.86 16 15 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 16 C -0.17 -2.91 7.62 -25.92 -0.20 -3.10 16 17 C 0.16 3.17 4.55 -67.11 -0.31 2.87 16 18 H 0.06 1.21 8.11 -51.93 -0.42 0.78 16 19 N -0.71 -16.77 5.02 -52.63 -0.26 -17.04 16 20 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 24 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 C -0.18 -2.92 7.57 -25.91 -0.20 -3.12 16 29 H 0.10 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.10 1.31 7.83 -52.49 -0.41 0.89 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 38 H 0.41 7.11 7.31 -40.82 -0.30 6.82 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.39 9.58 6.36 -40.82 -0.26 9.32 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -29.67 354.04 -8.47 -38.15 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -7.22 Total: 17.05 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.51 Total: -6.59 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.24 Total: -54.82 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.29 Total: -15.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.67 -8.47 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022099879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.128 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds