Wall clock time and date at job start Tue Mar 31 2020 07:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 120.00079 * 2 1 4 4 H 1.09000 * 109.48530 * 359.96103 * 3 2 1 5 5 O 1.42903 * 109.47449 * 239.94101 * 3 2 1 6 6 C 1.42907 * 114.09613 * 178.86020 * 5 3 2 7 7 C 1.53091 * 109.41701 * 61.15126 * 6 5 3 8 8 C 1.53178 * 109.16378 * 302.39381 * 7 6 5 9 9 C 1.53083 * 109.48332 * 119.99723 * 3 2 1 10 10 H 1.09007 * 109.57539 * 57.65223 * 9 3 2 11 11 C 1.50706 * 109.52136 * 297.49688 * 9 3 2 12 12 O 1.21271 * 119.99784 * 0.31066 * 11 9 3 13 13 N 1.34779 * 119.99752 * 180.31835 * 11 9 3 14 14 C 1.46504 * 119.99563 * 180.02562 * 13 11 9 15 15 H 1.09003 * 112.90322 * 313.68471 * 14 13 11 16 16 C 1.53776 * 113.61789 * 84.93541 * 14 13 11 17 17 C 1.53784 * 87.08167 * 89.11432 * 16 14 13 18 18 H 1.08990 * 113.61685 * 139.97982 * 17 16 14 19 19 N 1.46507 * 113.61621 * 270.88966 * 17 16 14 20 20 C 1.36939 * 119.99704 * 202.42517 * 19 17 16 21 21 H 1.07995 * 119.99880 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99602 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00216 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99749 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47566 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47514 * 119.99975 * 24 22 20 27 27 H 1.48511 * 109.46828 * 239.99822 * 24 22 20 28 28 C 1.53785 * 113.61136 * 182.43767 * 14 13 11 29 29 H 1.08002 * 119.99941 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99888 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99888 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47787 * 301.17162 * 6 5 3 33 33 H 1.09001 * 109.49467 * 181.14349 * 6 5 3 34 34 H 1.09003 * 109.52402 * 182.48864 * 7 6 5 35 35 H 1.08999 * 109.56981 * 62.33150 * 7 6 5 36 36 H 1.08994 * 109.54463 * 297.11318 * 8 7 6 37 37 H 1.09003 * 109.61429 * 176.88915 * 8 7 6 38 38 H 0.96996 * 120.00052 * 359.97438 * 13 11 9 39 39 H 1.09003 * 113.61499 * 334.57117 * 16 14 13 40 40 H 1.08991 * 113.61777 * 203.66188 * 16 14 13 41 41 H 0.96996 * 119.99950 * 22.41775 * 19 17 16 42 42 H 0.96994 * 120.00158 * 180.02562 * 23 22 20 43 43 H 1.08993 * 113.60958 * 156.33590 * 28 14 13 44 44 H 1.08995 * 113.61280 * 25.42732 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1338 -0.0007 5 8 2.8862 1.3803 -1.1661 6 6 3.6288 2.5960 -1.2788 7 6 4.5718 2.7294 -0.0802 8 6 3.7510 2.6878 1.2124 9 6 2.9437 1.3865 1.2499 10 1 3.6247 0.5357 1.2730 11 6 2.0738 1.3688 2.4804 12 8 0.8685 1.2924 2.3699 13 7 2.6354 1.4381 3.7036 14 6 1.7897 1.4203 4.8999 15 1 0.9357 2.0936 4.8257 16 6 1.4187 0.0043 5.3710 17 6 2.7039 0.0334 6.2150 18 1 2.5880 -0.4129 7.2025 19 7 3.8855 -0.4584 5.5020 20 6 4.9646 -0.9241 6.2048 21 1 4.9448 -0.9284 7.2845 22 6 6.0840 -1.3906 5.5292 23 7 6.1079 -1.3857 4.2132 24 14 7.5557 -2.0264 6.4877 25 1 7.2793 -1.9263 7.9433 26 1 7.8058 -3.4452 6.1274 27 1 8.7525 -1.2127 6.1545 28 6 2.5769 1.5660 6.2129 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 2.9412 3.4416 -1.2962 33 1 4.2114 2.5823 -2.2000 34 1 5.1071 3.6769 -0.1415 35 1 5.2865 1.9064 -0.0846 36 1 3.0715 3.5395 1.2404 37 1 4.4201 2.7266 2.0721 38 1 3.5994 1.4990 3.7920 39 1 1.4362 -0.7396 4.5745 40 1 0.5064 -0.0328 5.9662 41 1 3.9034 -0.4543 4.5322 42 1 6.8898 -1.7120 3.7411 43 1 1.9811 1.9558 7.0381 44 1 3.5293 2.0829 6.0959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022099879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:42 Heat of formation + Delta-G solvation = -50.499941 kcal Electronic energy + Delta-G solvation = -24914.104113 eV Core-core repulsion = 21446.020921 eV Total energy + Delta-G solvation = -3468.083192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66303 -40.33985 -38.88698 -35.54734 -35.09465 -34.84669 -33.73771 -31.83084 -31.06343 -26.70082 -26.35235 -26.00288 -25.59313 -23.91880 -21.99923 -20.98036 -20.92788 -20.22545 -19.25917 -18.37169 -17.34769 -17.13547 -16.79504 -16.54895 -16.29543 -15.74487 -15.65991 -15.37582 -15.05420 -14.93045 -14.86619 -14.30842 -13.96177 -13.49935 -13.47485 -13.23548 -13.07909 -12.81548 -12.77907 -12.60033 -12.50090 -12.09913 -12.07674 -11.89621 -11.88055 -11.70311 -11.41345 -11.07439 -10.91377 -10.77038 -10.65642 -10.09476 -9.85858 -8.99994 -7.94306 -5.22490 1.31510 1.48065 1.49665 1.58518 1.66823 2.20549 2.56223 2.97895 3.38222 3.57342 3.64842 3.70517 3.76657 3.84869 3.95898 4.01353 4.06624 4.17753 4.23819 4.29099 4.39722 4.41601 4.54804 4.65905 4.78751 4.84982 4.85681 4.91124 4.94684 5.00325 5.00629 5.09018 5.10281 5.25203 5.27960 5.39367 5.53434 5.68235 5.75666 5.84081 6.24499 6.28683 6.58840 7.27117 7.35115 8.10159 8.34635 9.28285 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.005036 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.157344 B = 5558.830973 C = 6549.294070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.171 4.171 3 C 0.153 3.847 4 H 0.067 0.933 5 O -0.392 6.392 6 C 0.052 3.948 7 C -0.151 4.151 8 C -0.109 4.109 9 C -0.133 4.133 10 H 0.090 0.910 11 C 0.524 3.476 12 O -0.561 6.561 13 N -0.701 5.701 14 C 0.130 3.870 15 H 0.091 0.909 16 C -0.158 4.158 17 C 0.144 3.856 18 H 0.064 0.936 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.077 0.923 22 C -0.069 4.069 23 N -0.963 5.963 24 Si 0.969 3.031 25 H -0.268 1.268 26 H -0.299 1.299 27 H -0.293 1.293 28 C -0.157 4.157 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.038 0.962 40 H 0.112 0.888 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.117 0.883 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 10.869 -6.568 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.189 4.189 3 C 0.095 3.905 4 H 0.085 0.915 5 O -0.311 6.311 6 C -0.024 4.024 7 C -0.188 4.188 8 C -0.147 4.147 9 C -0.155 4.155 10 H 0.108 0.892 11 C 0.310 3.690 12 O -0.440 6.440 13 N -0.352 5.352 14 C 0.025 3.975 15 H 0.109 0.891 16 C -0.198 4.198 17 C 0.034 3.966 18 H 0.082 0.918 19 N -0.358 5.358 20 C -0.374 4.374 21 H 0.095 0.905 22 C -0.262 4.262 23 N -0.613 5.613 24 Si 0.799 3.201 25 H -0.192 1.192 26 H -0.227 1.227 27 H -0.221 1.221 28 C -0.198 4.198 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.241 0.759 39 H 0.057 0.943 40 H 0.130 0.870 41 H 0.210 0.790 42 H 0.059 0.941 43 H 0.135 0.865 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.220 10.611 -6.612 14.962 hybrid contribution 1.536 -0.641 0.364 1.703 sum -6.684 9.970 -6.248 13.532 Atomic orbital electron populations 1.23821 0.95192 1.02357 0.96231 1.22527 0.96274 0.96830 1.03298 1.20694 0.90027 0.96426 0.83373 0.91505 1.87967 1.60490 1.40638 1.42034 1.22858 0.93846 0.86434 0.99236 1.22191 0.98567 1.04163 0.93927 1.21582 0.98605 0.94694 0.99812 1.21911 0.98284 1.01917 0.93340 0.89230 1.20521 0.88515 0.75087 0.84827 1.90633 1.15488 1.50696 1.87180 1.45886 1.10835 1.73485 1.05023 1.21753 0.93903 0.97190 0.84658 0.89072 1.23798 0.99299 0.96902 0.99754 1.21487 0.86509 0.93448 0.95183 0.91791 1.42389 1.13625 1.74250 1.05551 1.19679 0.93548 1.32669 0.91463 0.90523 1.25458 1.01125 1.03183 0.96416 1.69792 1.30392 1.54276 1.06827 0.85141 0.79685 0.76950 0.78341 1.19220 1.22653 1.22054 1.23967 1.00040 0.99530 0.96219 0.87187 0.88183 0.88184 0.91815 0.86773 0.87885 0.91766 0.90407 0.90800 0.75919 0.94328 0.86956 0.79022 0.94104 0.86456 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 13.11 67.78 0.89 -2.98 16 2 C -0.17 -5.28 8.04 25.65 0.21 -5.08 16 3 C 0.15 4.46 2.17 29.88 0.06 4.53 16 4 H 0.07 1.92 7.69 -2.39 -0.02 1.90 16 5 O -0.39 -11.00 10.39 -148.98 -1.55 -12.54 16 6 C 0.05 1.05 6.84 72.01 0.49 1.55 16 7 C -0.15 -3.10 6.14 30.68 0.19 -2.91 16 8 C -0.11 -2.64 5.18 30.71 0.16 -2.48 16 9 C -0.13 -4.02 2.22 -11.45 -0.03 -4.04 16 10 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 11 C 0.52 17.67 6.90 87.66 0.60 18.28 16 12 O -0.56 -20.74 13.95 -3.00 -0.04 -20.78 16 13 N -0.70 -23.38 4.23 -440.03 -1.86 -25.24 16 14 C 0.13 4.06 4.00 45.52 0.18 4.24 16 15 H 0.09 2.66 8.05 -2.39 -0.02 2.64 16 16 C -0.16 -5.29 7.62 31.12 0.24 -5.06 16 17 C 0.14 5.40 4.55 45.52 0.21 5.61 16 18 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 19 N -0.72 -34.30 5.02 -320.43 -1.61 -35.91 16 20 C -0.24 -12.81 9.97 84.03 0.84 -11.97 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.96 -56.07 13.06 21.65 0.28 -55.79 16 24 Si 0.97 44.75 29.55 68.60 2.03 46.77 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 28 C -0.16 -4.73 7.57 31.12 0.24 -4.49 16 29 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.10 2.66 7.83 -2.91 -0.02 2.64 16 31 H 0.10 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.84 7.67 -2.39 -0.02 1.82 16 38 H 0.40 14.27 7.31 -92.71 -0.68 13.60 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.38 19.15 6.36 -92.71 -0.59 18.56 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 Total: -1.00 -63.70 354.04 1.72 -61.98 By element: Atomic # 1 Polarization: 49.92 SS G_CDS: -0.28 Total: 49.64 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 4.75 Total: -8.13 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.19 Total: -116.94 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.59 Total: -33.33 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.70 1.72 -61.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022099879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.483 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds