Wall clock time and date at job start Tue Mar 31 2020 07:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46790 * 2 1 4 4 H 1.08995 * 109.82981 * 305.88687 * 3 2 1 5 5 C 1.54384 * 109.83115 * 184.99920 * 3 2 1 6 6 C 1.55308 * 102.25531 * 219.13335 * 5 3 2 7 7 C 1.54946 * 100.94082 * 34.12970 * 6 5 3 8 8 H 1.09007 * 110.30711 * 82.57367 * 7 6 5 9 9 C 1.50699 * 110.30859 * 204.64005 * 7 6 5 10 10 O 1.21279 * 119.99957 * 115.00434 * 9 7 6 11 11 N 1.34774 * 120.00094 * 295.00105 * 9 7 6 12 12 C 1.46502 * 120.00405 * 179.97438 * 11 9 7 13 13 H 1.09007 * 115.51035 * 9.58757 * 12 11 9 14 14 C 1.53001 * 117.44731 * 224.24335 * 12 11 9 15 15 H 1.09004 * 119.53369 * 4.11408 * 14 12 11 16 16 C 1.54383 * 118.12150 * 160.80531 * 14 12 11 17 17 N 1.48150 * 104.61585 * 87.19482 * 16 14 12 18 18 C 1.36933 * 127.84069 * 140.43193 * 17 16 14 19 19 H 1.07999 * 120.00374 * 195.56272 * 18 17 16 20 20 C 1.38819 * 119.99969 * 15.56659 * 18 17 16 21 21 N 1.31622 * 119.99732 * 9.09105 * 20 18 17 22 22 Si 1.86798 * 120.00138 * 189.09527 * 20 18 17 23 23 H 1.48504 * 109.46718 * 59.99716 * 22 20 18 24 24 H 1.48496 * 109.47125 * 179.97438 * 22 20 18 25 25 H 1.48489 * 109.47112 * 299.99866 * 22 20 18 26 26 C 1.48144 * 104.31968 * 320.41020 * 17 16 14 27 27 C 1.52996 * 117.44340 * 154.99825 * 12 11 9 28 28 H 1.08996 * 119.54189 * 355.88938 * 27 12 11 29 29 O 1.43243 * 109.83005 * 66.86956 * 3 2 1 30 30 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46943 * 299.99643 * 1 2 3 32 32 H 1.08995 * 109.47154 * 59.99940 * 1 2 3 33 33 H 1.09001 * 109.47121 * 240.00022 * 2 1 3 34 34 H 1.09000 * 109.46712 * 120.00183 * 2 1 3 35 35 H 1.09000 * 110.85008 * 100.94136 * 5 3 2 36 36 H 1.09002 * 110.84306 * 337.32057 * 5 3 2 37 37 H 1.08998 * 111.12230 * 276.20761 * 6 5 3 38 38 H 1.09001 * 111.12516 * 152.05206 * 6 5 3 39 39 H 0.97009 * 119.99892 * 0.02562 * 11 9 7 40 40 H 1.09000 * 110.40635 * 205.97357 * 16 14 12 41 41 H 1.08996 * 110.41281 * 328.29103 * 16 14 12 42 42 H 0.96996 * 119.99609 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.41099 * 280.80308 * 26 17 16 44 44 H 1.09000 * 110.40279 * 158.37437 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5965 1.9914 -0.8307 5 6 3.5786 1.4541 -0.1266 6 6 3.9798 2.6054 0.8354 7 6 2.8993 2.4589 1.9363 8 1 3.1872 1.6854 2.6484 9 6 2.6945 3.7722 2.6463 10 8 1.6306 4.3482 2.5611 11 7 3.6935 4.3067 3.3761 12 6 3.4947 5.5838 4.0659 13 1 2.4706 5.9571 4.0766 14 6 4.6199 6.6166 3.9760 15 1 5.4928 6.4078 3.3574 16 6 4.2810 8.0907 4.2851 17 7 4.4428 8.2116 5.7528 18 6 4.9834 9.2554 6.4552 19 1 5.2715 9.1202 7.4872 20 6 5.1610 10.4875 5.8407 21 7 4.6505 10.7075 4.6477 22 14 6.1248 11.8329 6.7069 23 1 7.5079 11.3602 6.9696 24 1 6.1706 13.0418 5.8457 25 1 5.4627 12.1660 7.9936 26 6 3.8864 6.9473 6.2882 27 6 4.3597 5.8626 5.2967 28 1 5.0388 5.0922 5.6620 29 8 1.7028 2.0770 1.2392 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8820 1.6793 -1.1489 36 1 4.0022 0.5061 0.2052 37 1 3.9076 3.5739 0.3405 38 1 4.9788 2.4476 1.2419 39 1 4.5446 3.8462 3.4440 40 1 4.9740 8.7561 3.7703 41 1 3.2544 8.3138 3.9945 42 1 4.7749 11.5683 4.2182 43 1 2.7976 6.9912 6.3122 44 1 4.2818 6.7500 7.2846 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025807224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:34 Heat of formation + Delta-G solvation = -28.250176 kcal Electronic energy + Delta-G solvation = -23551.271238 eV Core-core repulsion = 20084.152869 eV Total energy + Delta-G solvation = -3467.118370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.52923 -39.22181 -37.98626 -34.49445 -33.84336 -32.89084 -32.19925 -30.36417 -28.82917 -27.14702 -25.73727 -24.56290 -22.32224 -21.95348 -21.13991 -20.48756 -19.98570 -19.27999 -17.80564 -17.03702 -16.77353 -16.02853 -15.97186 -14.87462 -14.63231 -14.60225 -14.38705 -13.74632 -13.60898 -13.42548 -13.22248 -13.20088 -12.76345 -12.31644 -12.20818 -12.15681 -11.80397 -11.55800 -11.46662 -11.28747 -11.19428 -11.01914 -10.98667 -10.81555 -10.41509 -10.21522 -10.18700 -10.08207 -9.73355 -9.46263 -9.16931 -8.74263 -8.33161 -6.87098 -5.79370 -3.14013 2.58324 2.80215 3.38967 3.43235 3.44746 3.68667 4.06676 4.29192 4.31505 4.43116 4.49642 4.68789 4.75669 4.83913 4.97108 5.06141 5.12831 5.14824 5.33919 5.37366 5.38412 5.41477 5.48500 5.55872 5.57484 5.66961 5.69938 5.83169 5.88357 5.93480 6.06939 6.14163 6.23632 6.51284 6.66120 6.68616 6.84928 6.88597 7.36159 7.53674 7.56575 7.71476 8.20637 8.28770 9.10795 9.73577 10.50648 11.34872 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.002591 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.556807 B =10802.756162 C =10895.757693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.149 4.149 6 C -0.147 4.147 7 C 0.066 3.934 8 H 0.095 0.905 9 C 0.513 3.487 10 O -0.517 6.517 11 N -0.696 5.696 12 C 0.098 3.902 13 H 0.132 0.868 14 C -0.180 4.180 15 H 0.102 0.898 16 C 0.185 3.815 17 N -0.593 5.593 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.156 3.844 27 C -0.182 4.182 28 H 0.103 0.897 29 O -0.344 6.344 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.398 0.602 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -22.378 -9.770 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.005 3.995 8 H 0.113 0.887 9 C 0.298 3.702 10 O -0.391 6.391 11 N -0.346 5.346 12 C -0.008 4.008 13 H 0.149 0.851 14 C -0.202 4.202 15 H 0.120 0.880 16 C 0.059 3.941 17 N -0.316 5.316 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.029 3.971 27 C -0.204 4.204 28 H 0.121 0.879 29 O -0.263 6.263 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.174 -21.642 -9.777 23.777 hybrid contribution 1.279 0.323 0.339 1.362 sum 0.106 -21.319 -9.437 23.314 Atomic orbital electron populations 1.21719 0.95138 1.01356 1.02624 1.21904 0.97218 0.95508 1.02303 1.22895 0.94257 0.93664 0.87419 0.89933 1.23192 0.95314 0.99144 1.01048 1.23265 0.98849 1.00493 0.95874 1.22792 0.86642 0.94645 0.95458 0.88728 1.20371 0.84257 0.86395 0.79166 1.90738 1.25729 1.61936 1.60678 1.45289 1.15807 1.22927 1.50590 1.21847 0.98240 0.84156 0.96554 0.85083 1.24736 0.99380 0.96449 0.99626 0.88041 1.21047 0.99522 0.88066 0.85488 1.45172 1.69524 1.15530 1.01396 1.18943 1.33424 0.87657 0.95632 0.90560 1.24916 1.00787 0.97044 0.97533 1.69892 1.47407 1.23457 1.15319 0.86177 0.79825 0.81099 0.78515 1.21105 1.21542 1.20951 1.21113 0.95917 0.85708 0.94376 1.24327 1.03474 1.01159 0.91406 0.87874 1.88577 1.27177 1.77863 1.32643 0.92954 0.91753 0.92816 0.91034 0.91477 0.89561 0.90026 0.89468 0.88984 0.76878 0.89112 0.95567 0.93452 0.95470 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.83 37.16 0.37 -0.85 16 2 C -0.13 -0.96 5.50 -26.73 -0.15 -1.11 16 3 C 0.08 0.67 3.51 -26.01 -0.09 0.58 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -0.97 6.54 -24.78 -0.16 -1.13 16 6 C -0.15 -1.15 6.55 -24.48 -0.16 -1.31 16 7 C 0.07 0.71 3.86 -26.86 -0.10 0.60 16 8 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 9 C 0.51 7.55 7.19 -10.99 -0.08 7.47 16 10 O -0.52 -10.24 16.11 -13.79 -0.22 -10.47 16 11 N -0.70 -9.25 5.55 -53.81 -0.30 -9.54 16 12 C 0.10 1.66 5.97 -67.93 -0.41 1.26 16 13 H 0.13 2.58 7.40 -51.93 -0.38 2.20 16 14 C -0.18 -3.42 7.06 -89.22 -0.63 -4.05 16 15 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 16 C 0.18 4.50 5.70 -2.41 -0.01 4.49 16 17 N -0.59 -15.27 3.38 -168.86 -0.57 -15.84 16 18 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 19 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 21 N -0.91 -26.96 10.86 55.49 0.60 -26.36 16 22 Si 0.91 21.92 29.56 -169.99 -5.03 16.90 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.16 3.28 7.04 -2.41 -0.02 3.27 16 27 C -0.18 -3.20 7.06 -89.22 -0.63 -3.83 16 28 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 29 O -0.34 -4.38 9.90 -54.58 -0.54 -4.92 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.41 7.85 -51.93 -0.41 0.01 16 37 H 0.09 0.80 8.05 -51.93 -0.42 0.39 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.90 8.83 -40.82 -0.36 3.54 16 40 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -33.72 356.78 -10.36 -44.08 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.36 Total: 2.16 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.32 Total: -1.39 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.27 Total: -51.74 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.76 Total: -15.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.72 -10.36 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025807224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.831 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds