Wall clock time and date at job start Tue Mar 31 2020 07:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.46790 * 2 1 4 4 H 1.08995 * 109.82981 * 305.88687 * 3 2 1 5 5 C 1.54384 * 109.83115 * 184.99920 * 3 2 1 6 6 C 1.55308 * 102.25531 * 219.13335 * 5 3 2 7 7 C 1.54946 * 100.94082 * 34.12970 * 6 5 3 8 8 H 1.09007 * 110.30711 * 82.57367 * 7 6 5 9 9 C 1.50699 * 110.30859 * 204.64005 * 7 6 5 10 10 O 1.21279 * 119.99957 * 115.00434 * 9 7 6 11 11 N 1.34774 * 120.00094 * 295.00105 * 9 7 6 12 12 C 1.46502 * 120.00405 * 179.97438 * 11 9 7 13 13 H 1.09007 * 115.51035 * 9.58757 * 12 11 9 14 14 C 1.53001 * 117.44731 * 224.24335 * 12 11 9 15 15 H 1.09004 * 119.53369 * 4.11408 * 14 12 11 16 16 C 1.54383 * 118.12150 * 160.80531 * 14 12 11 17 17 N 1.48150 * 104.61585 * 87.19482 * 16 14 12 18 18 C 1.36933 * 127.84069 * 140.43193 * 17 16 14 19 19 H 1.07999 * 120.00374 * 195.56272 * 18 17 16 20 20 C 1.38819 * 119.99969 * 15.56659 * 18 17 16 21 21 N 1.31622 * 119.99732 * 9.09105 * 20 18 17 22 22 Si 1.86798 * 120.00138 * 189.09527 * 20 18 17 23 23 H 1.48504 * 109.46718 * 59.99716 * 22 20 18 24 24 H 1.48496 * 109.47125 * 179.97438 * 22 20 18 25 25 H 1.48489 * 109.47112 * 299.99866 * 22 20 18 26 26 C 1.48144 * 104.31968 * 320.41020 * 17 16 14 27 27 C 1.52996 * 117.44340 * 154.99825 * 12 11 9 28 28 H 1.08996 * 119.54189 * 355.88938 * 27 12 11 29 29 O 1.43243 * 109.83005 * 66.86956 * 3 2 1 30 30 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46943 * 299.99643 * 1 2 3 32 32 H 1.08995 * 109.47154 * 59.99940 * 1 2 3 33 33 H 1.09001 * 109.47121 * 240.00022 * 2 1 3 34 34 H 1.09000 * 109.46712 * 120.00183 * 2 1 3 35 35 H 1.09000 * 110.85008 * 100.94136 * 5 3 2 36 36 H 1.09002 * 110.84306 * 337.32057 * 5 3 2 37 37 H 1.08998 * 111.12230 * 276.20761 * 6 5 3 38 38 H 1.09001 * 111.12516 * 152.05206 * 6 5 3 39 39 H 0.97009 * 119.99892 * 0.02562 * 11 9 7 40 40 H 1.09000 * 110.40635 * 205.97357 * 16 14 12 41 41 H 1.08996 * 110.41281 * 328.29103 * 16 14 12 42 42 H 0.96996 * 119.99609 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.41099 * 280.80308 * 26 17 16 44 44 H 1.09000 * 110.40279 * 158.37437 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5965 1.9914 -0.8307 5 6 3.5786 1.4541 -0.1266 6 6 3.9798 2.6054 0.8354 7 6 2.8993 2.4589 1.9363 8 1 3.1872 1.6854 2.6484 9 6 2.6945 3.7722 2.6463 10 8 1.6306 4.3482 2.5611 11 7 3.6935 4.3067 3.3761 12 6 3.4947 5.5838 4.0659 13 1 2.4706 5.9571 4.0766 14 6 4.6199 6.6166 3.9760 15 1 5.4928 6.4078 3.3574 16 6 4.2810 8.0907 4.2851 17 7 4.4428 8.2116 5.7528 18 6 4.9834 9.2554 6.4552 19 1 5.2715 9.1202 7.4872 20 6 5.1610 10.4875 5.8407 21 7 4.6505 10.7075 4.6477 22 14 6.1248 11.8329 6.7069 23 1 7.5079 11.3602 6.9696 24 1 6.1706 13.0418 5.8457 25 1 5.4627 12.1660 7.9936 26 6 3.8864 6.9473 6.2882 27 6 4.3597 5.8626 5.2967 28 1 5.0388 5.0922 5.6620 29 8 1.7028 2.0770 1.2392 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8820 1.6793 -1.1489 36 1 4.0022 0.5061 0.2052 37 1 3.9076 3.5739 0.3405 38 1 4.9788 2.4476 1.2419 39 1 4.5446 3.8462 3.4440 40 1 4.9740 8.7561 3.7703 41 1 3.2544 8.3138 3.9945 42 1 4.7749 11.5683 4.2182 43 1 2.7976 6.9912 6.3122 44 1 4.2818 6.7500 7.2846 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025807224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:33 Heat of formation + Delta-G solvation = -50.493886 kcal Electronic energy + Delta-G solvation = -23552.235798 eV Core-core repulsion = 20084.152869 eV Total energy + Delta-G solvation = -3468.082929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53436 -40.50348 -39.30482 -36.11650 -34.62453 -34.32874 -33.11637 -32.09213 -29.69163 -28.93561 -27.58156 -25.47779 -23.57839 -22.80851 -22.10661 -21.96260 -21.13930 -20.86299 -18.89443 -18.71033 -17.99072 -17.20284 -16.82544 -16.73578 -15.93954 -15.61008 -15.41661 -15.12929 -14.92983 -14.66116 -14.40198 -14.03175 -13.90333 -13.77594 -13.35844 -13.27642 -13.05830 -12.89449 -12.76863 -12.67798 -12.40333 -12.17801 -12.07847 -11.90352 -11.87064 -11.78462 -11.67553 -11.58470 -11.06352 -10.83042 -10.74332 -10.40675 -9.74596 -8.94265 -7.92338 -5.29968 1.44134 1.46568 1.50093 1.56981 1.71875 2.47903 2.80289 2.92325 3.27357 3.39421 3.55722 3.65562 3.77364 3.83198 3.91662 4.02979 4.09643 4.13362 4.23314 4.32604 4.37521 4.47371 4.50239 4.56042 4.79462 4.84344 4.86670 4.88880 4.96949 4.97878 5.00070 5.09179 5.15067 5.26878 5.34590 5.39762 5.43215 5.43525 5.51963 5.62741 5.99613 6.15156 6.51014 6.98524 7.18960 7.66081 8.44507 9.21489 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.002591 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.556807 B =10802.756162 C =10895.757693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.064 3.936 4 H 0.070 0.930 5 C -0.138 4.138 6 C -0.143 4.143 7 C 0.069 3.931 8 H 0.129 0.871 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.675 5.675 12 C 0.114 3.886 13 H 0.098 0.902 14 C -0.183 4.183 15 H 0.127 0.873 16 C 0.188 3.812 17 N -0.616 5.616 18 C -0.242 4.242 19 H 0.085 0.915 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.984 3.016 23 H -0.273 1.273 24 H -0.295 1.295 25 H -0.275 1.275 26 C 0.146 3.854 27 C -0.155 4.155 28 H 0.146 0.854 29 O -0.382 6.382 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.421 0.579 40 H 0.058 0.942 41 H -0.010 1.010 42 H 0.250 0.750 43 H 0.016 0.984 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -25.417 -9.581 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.007 3.993 4 H 0.088 0.912 5 C -0.175 4.175 6 C -0.181 4.181 7 C 0.008 3.992 8 H 0.146 0.854 9 C 0.296 3.704 10 O -0.457 6.457 11 N -0.326 5.326 12 C 0.006 3.994 13 H 0.116 0.884 14 C -0.204 4.204 15 H 0.145 0.855 16 C 0.062 3.938 17 N -0.341 5.341 18 C -0.370 4.370 19 H 0.103 0.897 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.812 3.188 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.021 3.979 27 C -0.176 4.176 28 H 0.163 0.837 29 O -0.302 6.302 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.008 0.992 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.389 -24.748 -9.574 26.572 hybrid contribution 0.363 1.257 0.278 1.338 sum 1.752 -23.491 -9.296 25.324 Atomic orbital electron populations 1.21732 0.96331 1.01775 1.01218 1.21897 0.96169 0.94652 1.03656 1.23114 0.96418 0.94092 0.85697 0.91182 1.23200 0.93006 0.99683 1.01647 1.23321 0.99466 1.00215 0.95067 1.22969 0.87115 0.92549 0.96570 0.85409 1.21318 0.83235 0.87442 0.78366 1.90718 1.28292 1.63905 1.62777 1.45024 1.16817 1.21262 1.49537 1.21348 0.96072 0.85271 0.96673 0.88416 1.24406 1.01126 0.93187 1.01719 0.85527 1.20761 0.96561 0.91330 0.85148 1.45486 1.69887 1.16617 1.02066 1.19389 1.32901 0.88522 0.96229 0.89686 1.25823 1.02154 0.99520 0.98382 1.70112 1.49081 1.23621 1.16980 0.85073 0.78708 0.77719 0.77335 1.19869 1.22149 1.20075 1.21282 0.95303 0.85156 0.96199 1.24242 1.03205 1.00484 0.89664 0.83657 1.88555 1.28942 1.78440 1.34214 0.91591 0.94399 0.93013 0.88611 0.90958 0.88154 0.87556 0.91406 0.85557 0.74068 0.92336 0.99226 0.94107 0.96612 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.83 71.98 0.71 -1.67 16 2 C -0.13 -1.55 5.50 30.59 0.17 -1.39 16 3 C 0.06 1.03 3.51 31.06 0.11 1.14 16 4 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.14 -1.28 6.54 31.86 0.21 -1.07 16 6 C -0.14 -1.76 6.55 32.05 0.21 -1.55 16 7 C 0.07 1.31 3.86 30.51 0.12 1.43 16 8 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 9 C 0.51 14.54 7.19 87.66 0.63 15.17 16 10 O -0.58 -23.76 16.11 15.48 0.25 -23.51 16 11 N -0.67 -16.41 5.55 -442.53 -2.45 -18.87 16 12 C 0.11 3.79 5.97 44.99 0.27 4.06 16 13 H 0.10 4.03 7.40 -2.38 -0.02 4.01 16 14 C -0.18 -6.81 7.06 -9.89 -0.07 -6.88 16 15 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 16 C 0.19 9.56 5.70 86.53 0.49 10.05 16 17 N -0.62 -32.35 3.38 -688.16 -2.33 -34.68 16 18 C -0.24 -13.63 10.35 84.04 0.87 -12.76 16 19 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 20 C -0.07 -3.74 5.40 84.86 0.46 -3.29 16 21 N -0.95 -58.26 10.86 21.65 0.24 -58.03 16 22 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.15 6.11 7.04 86.53 0.61 6.72 16 27 C -0.16 -5.10 7.06 -9.89 -0.07 -5.17 16 28 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 29 O -0.38 -9.48 9.90 -130.48 -1.29 -10.77 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.77 7.89 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.51 7.85 -2.39 -0.02 0.50 16 37 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16 38 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.42 6.42 8.83 -92.70 -0.82 5.61 16 40 H 0.06 3.32 6.51 -2.39 -0.02 3.31 16 41 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -79.18 356.78 1.32 -77.86 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.17 Total: 15.56 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.71 Total: 4.80 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.54 Total: -111.57 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.04 Total: -34.28 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -79.18 1.32 -77.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025807224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.370 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds