Wall clock time and date at job start Tue Mar 31 2020 07:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00624 * 2 1 4 4 C 1.50701 * 119.99929 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.48647 * 127.61374 * 4 2 1 6 6 O 1.42903 * 109.48216 * 7.57812 * 4 2 1 7 7 C 1.42900 * 114.10022 * 178.86103 * 6 4 2 8 8 C 1.53090 * 109.41687 * 61.16040 * 7 6 4 9 9 C 1.53180 * 109.15964 * 302.39113 * 8 7 6 10 10 C 1.53091 * 109.48201 * 247.63909 * 4 2 1 11 11 H 1.08999 * 109.52263 * 297.49758 * 10 4 2 12 12 C 1.50699 * 109.52550 * 57.61886 * 10 4 2 13 13 O 1.21291 * 119.99855 * 34.62717 * 12 10 4 14 14 N 1.34774 * 120.00369 * 214.63240 * 12 10 4 15 15 C 1.46503 * 120.00145 * 179.97438 * 14 12 10 16 16 C 1.53951 * 113.73892 * 251.67349 * 15 14 12 17 17 N 1.47583 * 86.11227 * 222.04538 * 16 15 14 18 18 C 1.36937 * 134.48944 * 204.63913 * 17 16 15 19 19 H 1.07997 * 120.00057 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00121 * 0.02562 * 18 17 16 21 21 N 1.31613 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47132 * 59.99905 * 22 20 18 24 24 H 1.48501 * 109.46847 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47303 * 300.00146 * 22 20 18 26 26 C 1.47576 * 91.01615 * 24.64034 * 17 16 15 27 27 H 1.07993 * 120.00083 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99407 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47024 * 354.84489 * 3 2 1 30 30 H 1.09004 * 109.47364 * 114.83713 * 3 2 1 31 31 H 1.09001 * 109.47734 * 234.84285 * 3 2 1 32 32 H 1.09001 * 109.48151 * 301.17305 * 7 6 4 33 33 H 1.09008 * 109.47756 * 181.14115 * 7 6 4 34 34 H 1.08994 * 109.52199 * 182.48297 * 8 7 6 35 35 H 1.09007 * 109.51934 * 62.29503 * 8 7 6 36 36 H 1.08997 * 109.54270 * 297.11089 * 9 8 7 37 37 H 1.09004 * 109.53736 * 176.84817 * 9 8 7 38 38 H 0.96994 * 119.99855 * 359.97438 * 14 12 10 39 39 H 1.08996 * 112.94521 * 23.40482 * 15 14 12 40 40 H 1.09003 * 113.76916 * 336.34644 * 16 15 14 41 41 H 1.08997 * 113.76857 * 107.74622 * 16 15 14 42 42 H 0.96998 * 120.00330 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.76592 * 221.05340 * 26 17 16 44 44 H 1.09004 * 113.76914 * 89.65825 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 2.7884 -1.3061 -0.8146 6 8 1.1452 -2.3855 -0.1787 7 6 1.7614 -3.6742 -0.2202 8 6 2.4800 -3.9376 1.1056 9 6 3.5082 -2.8285 1.3492 10 6 2.7943 -1.4734 1.3341 11 1 3.5265 -0.6746 1.4516 12 6 1.7991 -1.4144 2.4642 13 8 0.6846 -1.8691 2.3151 14 7 2.1473 -0.8562 3.6404 15 6 1.1796 -0.7983 4.7388 16 6 0.6450 0.6177 5.0199 17 7 0.7929 0.2811 6.4492 18 6 0.2054 0.7223 7.6047 19 1 0.4996 0.3016 8.5549 20 6 -0.7683 1.7105 7.5549 21 7 -1.1272 2.2230 6.3970 22 14 -1.5692 2.3129 9.1314 23 1 -0.5304 2.8777 10.0298 24 1 -2.5692 3.3622 8.8089 25 1 -2.2450 1.1771 9.8086 26 6 1.8281 -0.7219 6.1329 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.3590 2.1315 -0.0923 30 1 2.6192 1.4038 0.9326 31 1 2.7578 1.3238 -0.8402 32 1 2.4823 -3.7063 -1.0371 33 1 0.9987 -4.4368 -0.3780 34 1 2.9875 -4.9011 1.0597 35 1 1.7536 -3.9458 1.9183 36 1 4.2628 -2.8519 0.5631 37 1 3.9842 -2.9791 2.3181 38 1 3.0387 -0.4927 3.7597 39 1 0.3999 -1.5557 4.6585 40 1 1.3106 1.4132 4.6847 41 1 -0.3888 0.7669 4.7083 42 1 -1.8078 2.9132 6.3621 43 1 1.7390 -1.6423 6.7100 44 1 2.8413 -0.3200 6.1246 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031077761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:01 Heat of formation + Delta-G solvation = -9.452105 kcal Electronic energy + Delta-G solvation = -24919.804691 eV Core-core repulsion = 21453.501467 eV Total energy + Delta-G solvation = -3466.303224 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57251 -38.56829 -37.08827 -35.19328 -33.78689 -33.25092 -31.74245 -30.44945 -27.45199 -27.10322 -25.19288 -24.78683 -24.50729 -22.85845 -21.43095 -19.73455 -19.29502 -18.48356 -16.79769 -16.70433 -16.40988 -15.70245 -15.51532 -15.11889 -14.86431 -14.77497 -13.90893 -13.81714 -13.61124 -13.30193 -13.14013 -12.83500 -12.82068 -12.44472 -12.34477 -11.80597 -11.76747 -11.40690 -11.37995 -11.27508 -11.23281 -10.86189 -10.73772 -10.61882 -10.45547 -10.38695 -10.02372 -9.60084 -9.51728 -9.13678 -8.78806 -8.75470 -8.29114 -6.89937 -5.75540 -3.09588 2.45662 3.08810 3.40322 3.43859 3.46211 3.54688 3.81047 4.47250 4.55257 4.71026 4.72228 4.89951 5.01917 5.07142 5.19520 5.26627 5.30501 5.43324 5.44533 5.49775 5.55110 5.59911 5.64800 5.66238 5.70948 5.79608 5.90497 6.04558 6.06269 6.20478 6.25357 6.30174 6.45569 6.60224 6.86007 6.88357 6.97480 7.26837 7.40585 7.42599 7.59640 7.98203 8.02552 8.74970 9.04598 9.70748 10.58232 11.41004 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.003935 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.825280 B = 7113.118051 C = 7679.047375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C -0.110 4.110 4 C 0.152 3.848 5 H 0.065 0.935 6 O -0.352 6.352 7 C 0.067 3.933 8 C -0.161 4.161 9 C -0.108 4.108 10 C -0.137 4.137 11 H 0.093 0.907 12 C 0.519 3.481 13 O -0.516 6.516 14 N -0.720 5.720 15 C 0.095 3.905 16 C 0.156 3.844 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.111 3.889 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.392 0.608 39 H 0.109 0.891 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.047 0.953 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -8.497 -15.307 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 C -0.167 4.167 4 C 0.094 3.906 5 H 0.083 0.917 6 O -0.270 6.270 7 C -0.010 4.010 8 C -0.199 4.199 9 C -0.146 4.146 10 C -0.159 4.159 11 H 0.112 0.888 12 C 0.304 3.696 13 O -0.390 6.390 14 N -0.371 5.371 15 C -0.010 4.010 16 C 0.030 3.970 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.016 4.016 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.225 0.775 39 H 0.127 0.873 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.445 -8.599 -15.227 20.369 hybrid contribution 0.492 0.685 1.109 1.394 sum 10.937 -7.914 -14.118 19.534 Atomic orbital electron populations 1.23792 0.95398 1.02234 0.95941 1.21322 0.95840 0.93344 1.05365 1.20752 1.00190 0.94090 1.01634 1.20473 0.90305 0.86397 0.93423 0.91731 1.88031 1.32601 1.13362 1.93046 1.22464 0.97289 0.85870 0.95399 1.22237 0.99133 0.98227 1.00263 1.21502 0.97465 0.92864 1.02785 1.22003 0.98187 0.99810 0.95932 0.88843 1.20121 0.88479 0.77986 0.83023 1.90718 1.21121 1.45864 1.81323 1.46197 1.16645 1.60894 1.13391 1.23794 0.91974 1.01314 0.83890 1.22638 1.00280 0.90671 0.83432 1.45668 1.41192 1.43414 1.03076 1.18935 1.15440 1.16728 0.84338 0.90179 1.24807 0.99446 0.98848 0.97116 1.69820 1.33585 1.30223 1.22840 0.86185 0.78920 0.78295 0.82250 1.21163 1.21498 1.20985 1.22881 0.92973 0.93414 0.92337 0.86911 0.88878 0.91557 0.91776 0.92172 0.93883 0.89053 0.91140 0.89853 0.90989 0.90948 0.77490 0.87330 0.95642 0.90647 0.93500 0.93466 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 12.97 29.01 0.38 -1.67 16 2 C -0.16 -2.11 4.51 -101.07 -0.46 -2.57 16 3 C -0.11 -1.20 9.92 36.00 0.36 -0.85 16 4 C 0.15 1.87 2.60 -27.84 -0.07 1.80 16 5 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 6 O -0.35 -4.92 7.40 -55.57 -0.41 -5.33 16 7 C 0.07 0.72 6.84 37.20 0.25 0.97 16 8 C -0.16 -1.70 5.74 -26.59 -0.15 -1.85 16 9 C -0.11 -1.03 5.52 -26.55 -0.15 -1.18 16 10 C -0.14 -1.59 2.49 -91.63 -0.23 -1.82 16 11 H 0.09 0.89 7.76 -51.93 -0.40 0.49 16 12 C 0.52 8.13 5.52 -10.99 -0.06 8.07 16 13 O -0.52 -10.04 12.89 -14.79 -0.19 -10.23 16 14 N -0.72 -11.26 5.36 -55.34 -0.30 -11.56 16 15 C 0.10 1.90 4.43 -70.15 -0.31 1.58 16 16 C 0.16 3.81 7.32 -2.97 -0.02 3.79 16 17 N -0.61 -15.85 3.70 -178.10 -0.66 -16.51 16 18 C -0.23 -6.47 10.70 -15.06 -0.16 -6.63 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -27.81 11.38 55.49 0.63 -27.18 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.11 2.26 8.69 -2.98 -0.03 2.24 16 27 H 0.11 1.88 6.88 -52.49 -0.36 1.52 16 28 H 0.09 1.30 7.84 -52.49 -0.41 0.89 16 29 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 30 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.15 6.68 -51.93 -0.35 0.80 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.39 5.03 8.71 -40.82 -0.36 4.67 16 39 H 0.11 2.38 7.46 -51.93 -0.39 1.99 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 2.11 7.15 -51.93 -0.37 1.73 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -33.67 350.05 -8.64 -42.31 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.22 Total: 4.22 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.74 Total: 1.64 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.32 Total: -55.25 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.60 Total: -15.57 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.67 -8.64 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031077761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.858 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds