Wall clock time and date at job start Tue Mar 31 2020 07:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00082 * 2 1 4 4 H 1.09005 * 109.48859 * 359.96736 * 3 2 1 5 5 O 1.42895 * 109.48106 * 239.93753 * 3 2 1 6 6 C 1.42908 * 114.09799 * 178.85713 * 5 3 2 7 7 C 1.53090 * 109.41353 * 61.15965 * 6 5 3 8 8 C 1.53180 * 109.16063 * 302.38943 * 7 6 5 9 9 C 1.53095 * 109.48024 * 119.99220 * 3 2 1 10 10 H 1.08997 * 109.52090 * 57.62652 * 9 3 2 11 11 C 1.50700 * 109.52476 * 297.49846 * 9 3 2 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 9 3 13 13 N 1.34777 * 119.99675 * 180.27793 * 11 9 3 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 9 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 C 1.53952 * 113.74292 * 273.74097 * 15 14 13 17 17 N 1.47813 * 86.03902 * 222.08314 * 16 15 14 18 18 C 1.36932 * 134.46046 * 204.64679 * 17 16 15 19 19 H 1.08003 * 120.00358 * 179.86918 * 18 17 16 20 20 C 1.38816 * 119.99533 * 359.86499 * 18 17 16 21 21 N 1.31617 * 120.00165 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99631 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47215 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47105 * 120.00056 * 22 20 18 25 25 H 1.48497 * 109.46727 * 239.99612 * 22 20 18 26 26 C 1.47589 * 91.04931 * 24.54686 * 17 16 15 27 27 H 1.07997 * 120.00275 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99755 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00275 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47982 * 181.14442 * 6 5 3 31 31 H 1.08999 * 109.47718 * 301.16504 * 6 5 3 32 32 H 1.08995 * 109.52243 * 62.29877 * 7 6 5 33 33 H 1.09007 * 109.51979 * 182.48614 * 7 6 5 34 34 H 1.08997 * 109.54587 * 297.11019 * 8 7 6 35 35 H 1.09000 * 109.54032 * 176.84738 * 8 7 6 36 36 H 0.97000 * 119.99894 * 359.71837 * 13 11 9 37 37 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 38 38 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 39 39 H 1.08998 * 112.94600 * 45.33253 * 15 14 13 40 40 H 1.08998 * 113.77009 * 336.34864 * 16 15 14 41 41 H 1.09000 * 113.76911 * 107.74268 * 16 15 14 42 42 H 0.96998 * 119.99551 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.77057 * 221.14924 * 26 17 16 44 44 H 1.09003 * 113.86816 * 89.77015 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1338 -0.0006 5 8 2.8862 1.3803 -1.1659 6 6 3.6288 2.5962 -1.2786 7 6 4.5718 2.7294 -0.0800 8 6 3.7509 2.6877 1.2126 9 6 2.9436 1.3865 1.2500 10 1 3.6239 0.5351 1.2726 11 6 2.0737 1.3687 2.4805 12 8 0.8680 1.2985 2.3697 13 7 2.6353 1.4372 3.7038 14 6 1.7893 1.4260 4.8997 15 6 2.6697 1.5124 6.1480 16 6 3.1794 0.1466 6.6428 17 7 2.8731 0.6397 8.0021 18 6 3.3336 0.3419 9.2568 19 1 2.9365 0.8627 10.1156 20 6 4.3107 -0.6297 9.4250 21 7 4.7942 -1.2649 8.3785 22 14 4.9384 -1.0365 11.1367 23 1 4.2388 -0.1885 12.1350 24 1 4.6770 -2.4680 11.4325 25 1 6.3988 -0.7760 11.2032 26 6 1.8740 1.5834 7.4640 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 4.2113 2.5822 -2.1997 31 1 2.9411 3.4417 -1.2961 32 1 5.2857 1.9058 -0.0849 33 1 5.1070 3.6770 -0.1412 34 1 3.0714 3.5394 1.2407 35 1 4.4211 2.7258 2.0714 36 1 3.5996 1.4937 3.7923 37 1 1.1113 2.2790 4.8732 38 1 1.2106 0.5027 4.9269 39 1 3.4504 2.2686 6.0659 40 1 2.5592 -0.6934 6.3300 41 1 4.2419 -0.0174 6.4626 42 1 5.4773 -1.9434 8.4961 43 1 1.8961 2.5645 7.9385 44 1 0.8687 1.1681 7.3926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031678187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:22 Heat of formation + Delta-G solvation = -14.291314 kcal Electronic energy + Delta-G solvation = -23867.588717 eV Core-core repulsion = 20401.075649 eV Total energy + Delta-G solvation = -3466.513068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54890 -38.80079 -37.86288 -34.70711 -33.95130 -33.85828 -32.16780 -30.54066 -28.72912 -26.06911 -25.24303 -24.82097 -24.16509 -22.00048 -21.12439 -20.13118 -20.01896 -19.00110 -17.39083 -16.77107 -16.54244 -16.10287 -15.60638 -15.35624 -14.94074 -14.76903 -14.45591 -14.10319 -13.95741 -13.75095 -13.47403 -12.97420 -12.83317 -12.64630 -12.33606 -11.96448 -11.75598 -11.42972 -11.36826 -11.32376 -11.14962 -11.01563 -10.74644 -10.62657 -10.54974 -10.00333 -9.87822 -9.76125 -9.70562 -9.46873 -9.14991 -8.82707 -8.79024 -6.89860 -5.79104 -3.11150 2.23603 2.74468 3.24764 3.37237 3.42687 3.45167 3.78691 4.41093 4.43396 4.46676 4.54101 4.68485 4.87452 4.97206 5.03810 5.14945 5.23132 5.24569 5.29819 5.35664 5.42495 5.49476 5.57697 5.64348 5.65598 5.71039 5.82261 5.88522 5.96490 6.03446 6.23243 6.34736 6.54817 6.61272 6.63446 6.74608 6.75790 7.02180 7.19653 7.33190 7.52926 7.65910 7.95914 8.34840 9.02711 9.68861 10.57848 11.38167 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002966 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.453307 B = 9437.707539 C = 9777.666455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.154 4.154 3 C 0.144 3.856 4 H 0.068 0.932 5 O -0.375 6.375 6 C 0.058 3.942 7 C -0.155 4.155 8 C -0.114 4.114 9 C -0.137 4.137 10 H 0.106 0.894 11 C 0.518 3.482 12 O -0.538 6.538 13 N -0.720 5.720 14 C 0.131 3.869 15 C -0.153 4.153 16 C 0.169 3.831 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.128 3.872 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.253 0.747 43 H 0.045 0.955 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 8.361 -19.380 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.087 3.913 4 H 0.086 0.914 5 O -0.294 6.294 6 C -0.019 4.019 7 C -0.193 4.193 8 C -0.152 4.152 9 C -0.159 4.159 10 H 0.124 0.876 11 C 0.303 3.697 12 O -0.415 6.415 13 N -0.371 5.371 14 C 0.007 3.993 15 C -0.173 4.173 16 C 0.044 3.956 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.002 3.998 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.772 7.995 -19.314 21.087 hybrid contribution 0.884 -0.209 1.359 1.634 sum -1.889 7.786 -17.956 19.662 Atomic orbital electron populations 1.23729 0.95575 1.01768 0.96773 1.22369 0.95648 0.96494 1.02702 1.20832 0.90194 0.97076 0.83240 0.91410 1.87992 1.60167 1.38753 1.42445 1.22604 0.93685 0.87233 0.98380 1.22208 0.98875 1.03295 0.94907 1.21604 0.98705 0.96089 0.98828 1.21967 0.98639 1.00995 0.94282 0.87580 1.20253 0.88728 0.76284 0.84412 1.90699 1.14657 1.49343 1.86766 1.46067 1.10939 1.74407 1.05729 1.21431 0.93200 1.01703 0.82963 1.23798 0.98934 1.02195 0.92373 1.22349 1.00016 0.90171 0.83113 1.45993 1.42013 1.43200 1.02694 1.19085 1.16174 1.16881 0.82863 0.90203 1.24784 0.99536 0.98696 0.97510 1.69821 1.31441 1.27955 1.27684 0.86048 0.78440 0.77895 0.83396 1.20462 1.21735 1.21699 1.22483 0.92926 0.94216 0.90200 0.88470 0.88331 0.87225 0.88694 0.93168 0.90562 0.90377 0.91179 0.90425 0.76505 0.92059 0.91460 0.89301 0.95517 0.91009 0.93719 0.93715 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 13.11 29.01 0.38 -1.28 16 2 C -0.15 -1.87 8.05 -36.03 -0.29 -2.16 16 3 C 0.14 1.66 2.17 -27.83 -0.06 1.60 16 4 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 5 O -0.37 -4.18 10.39 -35.23 -0.37 -4.54 16 6 C 0.06 0.46 6.84 37.20 0.25 0.72 16 7 C -0.16 -1.12 6.14 -26.59 -0.16 -1.28 16 8 C -0.11 -0.98 5.18 -26.55 -0.14 -1.11 16 9 C -0.14 -1.48 2.22 -91.63 -0.20 -1.68 16 10 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 11 C 0.52 7.01 6.89 -10.98 -0.08 6.94 16 12 O -0.54 -8.85 14.03 5.55 0.08 -8.77 16 13 N -0.72 -9.51 5.46 -60.30 -0.33 -9.84 16 14 C 0.13 2.00 5.51 -4.04 -0.02 1.97 16 15 C -0.15 -2.69 3.93 -89.69 -0.35 -3.04 16 16 C 0.17 3.85 7.08 -2.83 -0.02 3.83 16 17 N -0.61 -15.62 3.70 -177.65 -0.66 -16.28 16 18 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 19 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -27.16 11.39 55.49 0.63 -26.53 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.13 2.57 8.51 -2.96 -0.03 2.54 16 27 H 0.10 1.14 7.83 -52.49 -0.41 0.73 16 28 H 0.10 1.02 8.06 -52.48 -0.42 0.59 16 29 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.60 7.68 -51.93 -0.40 0.20 16 36 H 0.40 4.60 7.97 -40.82 -0.33 4.27 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.14 7.87 -51.93 -0.41 0.73 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 41 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -32.63 355.43 -8.63 -41.26 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.34 Total: 2.00 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.97 Total: 0.28 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.36 Total: -52.64 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.29 Total: -13.32 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.63 -8.63 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031678187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.964 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds