Wall clock time and date at job start Tue Mar 31 2020 07:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00082 * 2 1 4 4 H 1.09005 * 109.48859 * 359.96736 * 3 2 1 5 5 O 1.42895 * 109.48106 * 239.93753 * 3 2 1 6 6 C 1.42908 * 114.09799 * 178.85713 * 5 3 2 7 7 C 1.53090 * 109.41353 * 61.15965 * 6 5 3 8 8 C 1.53180 * 109.16063 * 302.38943 * 7 6 5 9 9 C 1.53095 * 109.48024 * 119.99220 * 3 2 1 10 10 H 1.08997 * 109.52090 * 57.62652 * 9 3 2 11 11 C 1.50700 * 109.52476 * 297.49846 * 9 3 2 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 9 3 13 13 N 1.34777 * 119.99675 * 180.27793 * 11 9 3 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 9 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 C 1.53952 * 113.74292 * 273.74097 * 15 14 13 17 17 N 1.47813 * 86.03902 * 222.08314 * 16 15 14 18 18 C 1.36932 * 134.46046 * 204.64679 * 17 16 15 19 19 H 1.08003 * 120.00358 * 179.86918 * 18 17 16 20 20 C 1.38816 * 119.99533 * 359.86499 * 18 17 16 21 21 N 1.31617 * 120.00165 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99631 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47215 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47105 * 120.00056 * 22 20 18 25 25 H 1.48497 * 109.46727 * 239.99612 * 22 20 18 26 26 C 1.47589 * 91.04931 * 24.54686 * 17 16 15 27 27 H 1.07997 * 120.00275 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99755 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00275 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47982 * 181.14442 * 6 5 3 31 31 H 1.08999 * 109.47718 * 301.16504 * 6 5 3 32 32 H 1.08995 * 109.52243 * 62.29877 * 7 6 5 33 33 H 1.09007 * 109.51979 * 182.48614 * 7 6 5 34 34 H 1.08997 * 109.54587 * 297.11019 * 8 7 6 35 35 H 1.09000 * 109.54032 * 176.84738 * 8 7 6 36 36 H 0.97000 * 119.99894 * 359.71837 * 13 11 9 37 37 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 38 38 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 39 39 H 1.08998 * 112.94600 * 45.33253 * 15 14 13 40 40 H 1.08998 * 113.77009 * 336.34864 * 16 15 14 41 41 H 1.09000 * 113.76911 * 107.74268 * 16 15 14 42 42 H 0.96998 * 119.99551 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.77057 * 221.14924 * 26 17 16 44 44 H 1.09003 * 113.86816 * 89.77015 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1338 -0.0006 5 8 2.8862 1.3803 -1.1659 6 6 3.6288 2.5962 -1.2786 7 6 4.5718 2.7294 -0.0800 8 6 3.7509 2.6877 1.2126 9 6 2.9436 1.3865 1.2500 10 1 3.6239 0.5351 1.2726 11 6 2.0737 1.3687 2.4805 12 8 0.8680 1.2985 2.3697 13 7 2.6353 1.4372 3.7038 14 6 1.7893 1.4260 4.8997 15 6 2.6697 1.5124 6.1480 16 6 3.1794 0.1466 6.6428 17 7 2.8731 0.6397 8.0021 18 6 3.3336 0.3419 9.2568 19 1 2.9365 0.8627 10.1156 20 6 4.3107 -0.6297 9.4250 21 7 4.7942 -1.2649 8.3785 22 14 4.9384 -1.0365 11.1367 23 1 4.2388 -0.1885 12.1350 24 1 4.6770 -2.4680 11.4325 25 1 6.3988 -0.7760 11.2032 26 6 1.8740 1.5834 7.4640 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 4.2113 2.5822 -2.1997 31 1 2.9411 3.4417 -1.2961 32 1 5.2857 1.9058 -0.0849 33 1 5.1070 3.6770 -0.1412 34 1 3.0714 3.5394 1.2407 35 1 4.4211 2.7258 2.0714 36 1 3.5996 1.4937 3.7923 37 1 1.1113 2.2790 4.8732 38 1 1.2106 0.5027 4.9269 39 1 3.4504 2.2686 6.0659 40 1 2.5592 -0.6934 6.3300 41 1 4.2419 -0.0174 6.4626 42 1 5.4773 -1.9434 8.4961 43 1 1.8961 2.5645 7.9385 44 1 0.8687 1.1681 7.3926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031678187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:21 Heat of formation + Delta-G solvation = -35.889396 kcal Electronic energy + Delta-G solvation = -23868.525280 eV Core-core repulsion = 20401.075649 eV Total energy + Delta-G solvation = -3467.449631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50667 -40.03936 -39.24497 -35.86924 -34.89554 -34.76932 -34.07262 -31.43960 -30.34146 -27.68510 -26.55041 -25.97291 -25.22369 -23.63131 -22.01545 -21.21100 -20.90860 -20.46660 -18.77625 -18.34662 -17.51810 -17.03504 -16.97385 -16.62380 -16.32742 -15.82439 -15.57256 -15.41266 -15.01528 -14.88291 -14.74293 -14.38185 -13.96051 -13.80521 -13.43528 -13.28418 -13.10626 -12.89475 -12.76772 -12.55884 -12.50559 -12.21304 -12.03100 -11.87576 -11.81029 -11.58064 -11.37078 -11.26842 -10.89533 -10.78421 -10.64267 -10.09908 -9.97126 -8.92270 -7.91465 -5.24539 1.32627 1.45379 1.46257 1.56470 1.68298 2.18112 2.46913 2.99100 3.29747 3.39250 3.58463 3.68041 3.76310 3.79990 4.02395 4.07362 4.09420 4.21699 4.26721 4.36837 4.40782 4.57832 4.60885 4.70167 4.78041 4.82420 4.86183 4.88850 4.89433 4.97759 5.04569 5.10141 5.12416 5.25449 5.31541 5.46344 5.55232 5.65349 5.69581 5.86294 5.93693 6.25875 6.59474 6.92024 7.27955 7.60271 8.55985 9.25560 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002966 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.453307 B = 9437.707539 C = 9777.666455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.169 4.169 3 C 0.147 3.853 4 H 0.058 0.942 5 O -0.390 6.390 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.113 4.113 9 C -0.130 4.130 10 H 0.111 0.889 11 C 0.518 3.482 12 O -0.568 6.568 13 N -0.715 5.715 14 C 0.144 3.856 15 C -0.113 4.113 16 C 0.166 3.834 17 N -0.646 5.646 18 C -0.235 4.235 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.125 3.875 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.411 0.589 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.010 0.990 41 H 0.045 0.955 42 H 0.248 0.752 43 H 0.062 0.938 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 9.880 -19.712 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C 0.089 3.911 4 H 0.076 0.924 5 O -0.310 6.310 6 C -0.028 4.028 7 C -0.187 4.187 8 C -0.151 4.151 9 C -0.151 4.151 10 H 0.129 0.871 11 C 0.305 3.695 12 O -0.447 6.447 13 N -0.367 5.367 14 C 0.019 3.981 15 C -0.133 4.133 16 C 0.040 3.960 17 N -0.372 5.372 18 C -0.364 4.364 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.000 4.000 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.123 0.877 40 H 0.027 0.973 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.281 9.551 -19.659 21.975 hybrid contribution 0.674 -0.663 1.417 1.704 sum -1.607 8.888 -18.241 20.355 Atomic orbital electron populations 1.23847 0.95684 1.02165 0.96615 1.22578 0.96032 0.97124 1.02937 1.20716 0.90237 0.96263 0.83838 0.92376 1.87973 1.60434 1.40406 1.42138 1.22871 0.93912 0.86270 0.99699 1.22190 0.98457 1.04500 0.93542 1.21649 0.98714 0.94504 1.00212 1.21932 0.98234 1.02625 0.92354 0.87095 1.20713 0.88616 0.75240 0.84976 1.90688 1.16147 1.50667 1.87188 1.45968 1.11323 1.74251 1.05152 1.21139 0.92816 1.01427 0.82672 1.23391 0.98590 0.98827 0.92502 1.22267 0.98242 0.92478 0.82991 1.46422 1.43680 1.44438 1.02666 1.19479 1.15964 1.16586 0.84345 0.89912 1.25619 1.00224 0.99060 1.01158 1.70001 1.32064 1.28554 1.29570 0.85015 0.77667 0.77271 0.79405 1.19003 1.22171 1.21636 1.22693 0.92544 0.93847 0.90895 0.88823 0.87267 0.87036 0.86924 0.92635 0.90525 0.88198 0.91241 0.89239 0.75310 0.90683 0.93203 0.87718 0.97251 0.93701 0.94291 0.91966 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 13.11 67.78 0.89 -2.55 16 2 C -0.17 -4.07 8.05 25.65 0.21 -3.87 16 3 C 0.15 3.30 2.17 29.88 0.06 3.36 16 4 H 0.06 1.39 7.68 -2.38 -0.02 1.37 16 5 O -0.39 -8.24 10.39 -148.98 -1.55 -9.79 16 6 C 0.05 0.67 6.84 72.01 0.49 1.17 16 7 C -0.15 -1.75 6.14 30.68 0.19 -1.56 16 8 C -0.11 -1.66 5.18 30.71 0.16 -1.50 16 9 C -0.13 -2.62 2.22 -11.45 -0.03 -2.65 16 10 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 11 C 0.52 13.43 6.89 87.66 0.60 14.04 16 12 O -0.57 -18.35 14.03 -3.04 -0.04 -18.40 16 13 N -0.72 -17.76 5.46 -463.07 -2.53 -20.29 16 14 C 0.14 4.17 5.51 86.38 0.48 4.64 16 15 C -0.11 -3.81 3.93 -10.13 -0.04 -3.85 16 16 C 0.17 7.62 7.08 86.44 0.61 8.23 16 17 N -0.65 -32.81 3.70 -715.96 -2.65 -35.46 16 18 C -0.24 -13.21 10.70 84.04 0.90 -12.31 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 21 N -0.95 -57.18 11.39 21.65 0.25 -56.94 16 22 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 26 C 0.13 4.82 8.51 86.48 0.74 5.56 16 27 H 0.09 2.23 7.83 -2.91 -0.02 2.20 16 28 H 0.11 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.11 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.12 7.68 -2.39 -0.02 1.10 16 36 H 0.41 8.63 7.97 -92.71 -0.74 7.89 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 39 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.01 0.47 7.92 -2.39 -0.02 0.45 16 41 H 0.04 2.29 7.17 -2.39 -0.02 2.27 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -70.56 355.43 1.47 -69.09 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.23 Total: 18.81 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.73 Total: 5.32 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.93 Total: -112.68 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.59 Total: -28.18 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.56 1.47 -69.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031678187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.200 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds