Wall clock time and date at job start Tue Mar 31 2020 07:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47044 * 2 1 4 4 C 1.53002 * 109.46852 * 119.99080 * 2 1 3 5 5 C 1.50697 * 109.47388 * 177.98957 * 4 2 1 6 6 O 1.21281 * 119.99910 * 5.52484 * 5 4 2 7 7 N 1.34771 * 120.00410 * 185.51998 * 5 4 2 8 8 C 1.47874 * 126.94294 * 0.03159 * 7 5 4 9 9 C 1.56022 * 105.10094 * 181.97927 * 8 7 5 10 10 H 1.09001 * 116.24760 * 159.68339 * 9 8 7 11 11 C 1.57077 * 99.61170 * 32.80535 * 9 8 7 12 12 C 1.49294 * 126.94666 * 179.71261 * 7 5 4 13 13 H 1.08995 * 116.14954 * 15.86484 * 12 7 5 14 14 C 1.55489 * 104.35355 * 246.78025 * 12 7 5 15 15 N 1.47862 * 105.17230 * 288.90254 * 14 12 7 16 16 C 1.36940 * 126.94298 * 181.92155 * 15 14 12 17 17 H 1.08008 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.38803 * 120.00101 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00102 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47011 * 60.00094 * 20 18 16 22 22 H 1.48502 * 109.47173 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47163 * 300.00374 * 20 18 16 24 24 C 1.52993 * 109.47420 * 239.99181 * 2 1 3 25 25 C 1.53001 * 117.49866 * 60.00190 * 24 2 1 26 26 C 1.52997 * 60.03239 * 252.47540 * 25 24 2 27 27 H 1.09003 * 109.47002 * 185.02621 * 1 2 3 28 28 H 1.08995 * 109.47298 * 305.03143 * 1 2 3 29 29 H 1.09002 * 109.46394 * 65.03246 * 1 2 3 30 30 H 0.96705 * 113.99583 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47171 * 297.99659 * 4 2 1 32 32 H 1.09005 * 109.47018 * 57.99651 * 4 2 1 33 33 H 1.08999 * 110.31109 * 300.88278 * 8 7 5 34 34 H 1.08991 * 110.31684 * 63.06948 * 8 7 5 35 35 H 1.08998 * 112.36777 * 64.26967 * 11 9 8 36 36 H 1.08998 * 112.36837 * 191.71956 * 11 9 8 37 37 H 1.09000 * 110.34921 * 169.93453 * 14 12 7 38 38 H 1.09007 * 110.29837 * 47.84490 * 14 12 7 39 39 H 0.97000 * 120.00612 * 179.97438 * 19 18 16 40 40 H 1.09004 * 115.54921 * 205.66810 * 24 2 1 41 41 H 1.08997 * 117.49622 * 359.97438 * 25 24 2 42 42 H 1.09002 * 117.50108 * 144.96912 * 25 24 2 43 43 H 1.08993 * 117.49745 * 107.49947 * 26 25 24 44 44 H 1.08999 * 117.49559 * 252.52380 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5461 -0.7645 1.2249 6 8 4.1554 -0.1818 0.3529 7 7 4.2161 -1.4506 2.1718 8 6 3.6331 -2.2117 3.2976 9 6 4.8572 -2.7545 4.0984 10 1 4.6673 -3.0437 5.1320 11 6 5.8707 -1.5790 3.8569 12 6 5.6965 -1.6012 2.2924 13 1 6.2993 -0.9019 1.7131 14 6 5.9536 -3.1107 2.0220 15 7 5.4302 -3.8119 3.2139 16 6 5.4642 -5.1591 3.4573 17 1 5.0455 -5.5534 4.3715 18 6 6.0367 -6.0178 2.5291 19 7 6.5474 -5.5372 1.4153 20 14 6.0837 -7.8555 2.8614 21 1 4.6978 -8.3662 3.0155 22 1 6.7432 -8.5473 1.7248 23 1 6.8479 -8.1137 4.1082 24 6 2.0401 -0.7214 -1.2491 25 6 1.6359 -0.1498 -2.6095 26 6 1.0107 -1.4548 -2.1125 27 1 -0.3633 -1.0237 0.0900 28 1 -0.3633 0.5899 0.8414 29 1 -0.3632 0.4338 -0.9317 30 1 2.9704 1.4236 0.0004 31 1 1.7062 -0.1868 2.1389 32 1 1.6475 -1.7379 1.2677 33 1 3.0305 -1.5558 3.9260 34 1 3.0292 -3.0382 2.9233 35 1 5.5335 -0.6426 4.3015 36 1 6.8845 -1.8356 4.1641 37 1 7.0214 -3.2993 1.9104 38 1 5.4179 -3.4315 1.1285 39 1 6.9478 -6.1372 0.7668 40 1 3.0325 -1.1641 -1.1639 41 1 1.0062 0.7399 -2.6146 42 1 2.3625 -0.2162 -3.4193 43 1 -0.0302 -1.4236 -1.7907 44 1 1.3263 -2.3798 -2.5951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032364072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:44 Heat of formation + Delta-G solvation = -2.446765 kcal Electronic energy + Delta-G solvation = -25153.326213 eV Core-core repulsion = 21687.326763 eV Total energy + Delta-G solvation = -3465.999450 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43317 -39.26414 -37.37532 -35.18109 -33.70040 -32.09152 -31.19120 -29.28395 -28.63772 -27.73333 -25.25460 -23.93954 -23.17311 -22.22982 -20.78104 -19.91844 -19.49955 -18.47419 -17.26864 -16.73369 -16.40749 -15.92081 -15.63079 -15.24431 -14.83842 -14.12089 -13.95305 -13.68033 -13.18185 -13.07312 -12.79588 -12.43793 -12.20699 -12.13267 -11.94055 -11.86603 -11.69156 -11.35268 -11.24054 -11.07808 -10.91658 -10.88755 -10.77983 -10.63732 -10.40048 -10.28711 -10.14007 -10.02084 -9.71795 -9.67333 -9.38146 -8.74681 -8.07436 -6.98085 -5.81306 -3.16243 2.94239 3.32678 3.34559 3.38680 3.40759 3.84317 4.37796 4.44704 4.60137 4.75600 4.78488 5.01887 5.12280 5.13246 5.16822 5.27113 5.31057 5.49104 5.51684 5.56910 5.59249 5.64685 5.72463 5.73514 5.83724 5.87590 5.93871 6.03411 6.12267 6.15940 6.20398 6.23557 6.35677 6.43117 6.46759 6.54679 6.62859 7.36989 7.42390 7.66547 7.85820 8.04649 8.08195 8.51152 9.05417 9.66447 10.35102 11.30712 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.004547 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.770775 B = 6156.227667 C = 6840.821671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.182 3.818 3 O -0.564 6.564 4 C -0.163 4.163 5 C 0.531 3.469 6 O -0.559 6.559 7 N -0.603 5.603 8 C 0.082 3.918 9 C 0.140 3.860 10 H 0.107 0.893 11 C -0.150 4.150 12 C 0.097 3.903 13 H 0.114 0.886 14 C 0.174 3.826 15 N -0.597 5.597 16 C -0.234 4.234 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C -0.177 4.177 25 C -0.166 4.166 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.388 0.612 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.255 0.745 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 10.018 0.308 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.141 3.859 3 O -0.375 6.375 4 C -0.203 4.203 5 C 0.321 3.679 6 O -0.441 6.441 7 N -0.335 5.335 8 C -0.043 4.043 9 C 0.031 3.969 10 H 0.125 0.875 11 C -0.190 4.190 12 C -0.005 4.005 13 H 0.132 0.868 14 C 0.049 3.951 15 N -0.321 5.321 16 C -0.362 4.362 17 H 0.098 0.902 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.743 3.257 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.196 4.196 25 C -0.203 4.203 26 C -0.223 4.223 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.241 0.759 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.015 10.222 -0.340 14.315 hybrid contribution 0.644 -1.360 0.085 1.508 sum -9.371 8.861 -0.256 12.900 Atomic orbital electron populations 1.21872 0.92898 1.02240 1.02846 1.20208 0.93385 0.81961 0.90371 1.86352 1.29231 1.25137 1.96813 1.22392 0.93223 1.03709 1.00948 1.20117 0.89317 0.78050 0.80438 1.90540 1.70184 1.46960 1.36418 1.49254 1.08331 1.48905 1.26997 1.23331 0.98333 0.94514 0.88142 1.23183 0.90471 0.88605 0.94620 0.87535 1.24200 1.01063 0.98498 0.95212 1.24328 0.80004 1.00056 0.96139 0.86844 1.21819 0.98985 0.84271 0.90065 1.45240 1.67800 1.01626 1.17465 1.19002 1.33584 0.80290 1.03299 0.90188 1.24814 1.00524 0.98210 0.96586 1.69903 1.43519 1.33607 1.09585 0.86198 0.77655 0.84754 0.77105 1.21136 1.21595 1.21065 1.23195 1.00613 1.03799 0.91943 1.22767 1.03488 0.96981 0.97043 1.23130 0.98516 0.96234 1.04446 0.90910 0.91852 0.91626 0.75913 0.88456 0.88316 0.92733 0.91022 0.91613 0.89784 0.92635 0.93545 0.93498 0.86421 0.88835 0.89181 0.88395 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.44 37.16 0.28 -1.26 16 2 C 0.18 2.45 0.92 -90.62 -0.08 2.36 16 3 O -0.56 -8.46 12.87 -53.65 -0.69 -9.15 16 4 C -0.16 -2.21 4.28 -27.88 -0.12 -2.33 16 5 C 0.53 9.01 7.16 -10.99 -0.08 8.93 16 6 O -0.56 -10.58 12.46 -12.86 -0.16 -10.74 16 7 N -0.60 -10.56 2.95 -156.88 -0.46 -11.02 16 8 C 0.08 1.34 6.01 -1.67 -0.01 1.33 16 9 C 0.14 2.50 5.53 -62.55 -0.35 2.16 16 10 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 11 C -0.15 -2.46 6.83 -22.10 -0.15 -2.61 16 12 C 0.10 1.82 5.23 -62.64 -0.33 1.49 16 13 H 0.11 2.08 8.05 -51.93 -0.42 1.66 16 14 C 0.17 4.07 4.75 -1.97 -0.01 4.06 16 15 N -0.60 -13.99 3.02 -156.68 -0.47 -14.46 16 16 C -0.23 -6.10 10.37 -15.06 -0.16 -6.25 16 17 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 18 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 19 N -0.92 -26.44 10.56 55.49 0.59 -25.86 16 20 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.18 -2.54 4.70 -90.58 -0.43 -2.97 16 25 C -0.17 -2.10 9.77 -26.73 -0.26 -2.36 16 26 C -0.19 -2.26 9.57 -26.69 -0.26 -2.51 16 27 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 30 H 0.39 6.03 6.53 45.56 0.30 6.33 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.45 7.46 -51.93 -0.39 1.06 16 38 H 0.05 1.26 7.68 -51.92 -0.40 0.86 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.12 2.06 6.09 -51.93 -0.32 1.74 16 41 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 1.02 5.89 -51.93 -0.31 0.72 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -29.89 341.64 -9.54 -39.43 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.42 Total: 10.46 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.04 Total: -0.17 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.35 Total: -51.34 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.85 Total: -19.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.89 -9.54 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032364072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.986 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds