Wall clock time and date at job start Tue Mar 31 2020 07:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47044 * 2 1 4 4 C 1.53002 * 109.46852 * 119.99080 * 2 1 3 5 5 C 1.50697 * 109.47388 * 177.98957 * 4 2 1 6 6 O 1.21281 * 119.99910 * 5.52484 * 5 4 2 7 7 N 1.34771 * 120.00410 * 185.51998 * 5 4 2 8 8 C 1.47874 * 126.94294 * 0.03159 * 7 5 4 9 9 C 1.56022 * 105.10094 * 181.97927 * 8 7 5 10 10 H 1.09001 * 116.24760 * 159.68339 * 9 8 7 11 11 C 1.57077 * 99.61170 * 32.80535 * 9 8 7 12 12 C 1.49294 * 126.94666 * 179.71261 * 7 5 4 13 13 H 1.08995 * 116.14954 * 15.86484 * 12 7 5 14 14 C 1.55489 * 104.35355 * 246.78025 * 12 7 5 15 15 N 1.47862 * 105.17230 * 288.90254 * 14 12 7 16 16 C 1.36940 * 126.94298 * 181.92155 * 15 14 12 17 17 H 1.08008 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.38803 * 120.00101 * 0.02562 * 16 15 14 19 19 N 1.31617 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00102 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47011 * 60.00094 * 20 18 16 22 22 H 1.48502 * 109.47173 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47163 * 300.00374 * 20 18 16 24 24 C 1.52993 * 109.47420 * 239.99181 * 2 1 3 25 25 C 1.53001 * 117.49866 * 60.00190 * 24 2 1 26 26 C 1.52997 * 60.03239 * 252.47540 * 25 24 2 27 27 H 1.09003 * 109.47002 * 185.02621 * 1 2 3 28 28 H 1.08995 * 109.47298 * 305.03143 * 1 2 3 29 29 H 1.09002 * 109.46394 * 65.03246 * 1 2 3 30 30 H 0.96705 * 113.99583 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47171 * 297.99659 * 4 2 1 32 32 H 1.09005 * 109.47018 * 57.99651 * 4 2 1 33 33 H 1.08999 * 110.31109 * 300.88278 * 8 7 5 34 34 H 1.08991 * 110.31684 * 63.06948 * 8 7 5 35 35 H 1.08998 * 112.36777 * 64.26967 * 11 9 8 36 36 H 1.08998 * 112.36837 * 191.71956 * 11 9 8 37 37 H 1.09000 * 110.34921 * 169.93453 * 14 12 7 38 38 H 1.09007 * 110.29837 * 47.84490 * 14 12 7 39 39 H 0.97000 * 120.00612 * 179.97438 * 19 18 16 40 40 H 1.09004 * 115.54921 * 205.66810 * 24 2 1 41 41 H 1.08997 * 117.49622 * 359.97438 * 25 24 2 42 42 H 1.09002 * 117.50108 * 144.96912 * 25 24 2 43 43 H 1.08993 * 117.49745 * 107.49947 * 26 25 24 44 44 H 1.08999 * 117.49559 * 252.52380 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5461 -0.7645 1.2249 6 8 4.1554 -0.1818 0.3529 7 7 4.2161 -1.4506 2.1718 8 6 3.6331 -2.2117 3.2976 9 6 4.8572 -2.7545 4.0984 10 1 4.6673 -3.0437 5.1320 11 6 5.8707 -1.5790 3.8569 12 6 5.6965 -1.6012 2.2924 13 1 6.2993 -0.9019 1.7131 14 6 5.9536 -3.1107 2.0220 15 7 5.4302 -3.8119 3.2139 16 6 5.4642 -5.1591 3.4573 17 1 5.0455 -5.5534 4.3715 18 6 6.0367 -6.0178 2.5291 19 7 6.5474 -5.5372 1.4153 20 14 6.0837 -7.8555 2.8614 21 1 4.6978 -8.3662 3.0155 22 1 6.7432 -8.5473 1.7248 23 1 6.8479 -8.1137 4.1082 24 6 2.0401 -0.7214 -1.2491 25 6 1.6359 -0.1498 -2.6095 26 6 1.0107 -1.4548 -2.1125 27 1 -0.3633 -1.0237 0.0900 28 1 -0.3633 0.5899 0.8414 29 1 -0.3632 0.4338 -0.9317 30 1 2.9704 1.4236 0.0004 31 1 1.7062 -0.1868 2.1389 32 1 1.6475 -1.7379 1.2677 33 1 3.0305 -1.5558 3.9260 34 1 3.0292 -3.0382 2.9233 35 1 5.5335 -0.6426 4.3015 36 1 6.8845 -1.8356 4.1641 37 1 7.0214 -3.2993 1.9104 38 1 5.4179 -3.4315 1.1285 39 1 6.9478 -6.1372 0.7668 40 1 3.0325 -1.1641 -1.1639 41 1 1.0062 0.7399 -2.6146 42 1 2.3625 -0.2162 -3.4193 43 1 -0.0302 -1.4236 -1.7907 44 1 1.3263 -2.3798 -2.5951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032364072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:44 Heat of formation + Delta-G solvation = -20.937580 kcal Electronic energy + Delta-G solvation = -25154.128035 eV Core-core repulsion = 21687.326763 eV Total energy + Delta-G solvation = -3466.801272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78991 -40.54754 -38.68079 -36.27577 -35.46493 -33.58231 -32.50968 -30.83501 -30.25815 -28.82943 -26.97908 -25.36750 -24.48671 -23.23065 -22.26696 -21.44115 -20.62986 -20.00188 -18.84188 -18.00053 -17.71236 -17.43456 -16.86668 -16.53372 -16.39763 -15.79762 -15.28686 -15.17003 -14.44603 -14.39140 -13.92702 -13.77022 -13.51012 -13.37416 -13.30715 -13.09773 -13.03865 -12.89122 -12.78538 -12.66688 -12.34104 -12.18155 -12.16268 -12.10758 -11.92828 -11.83760 -11.53688 -11.49072 -11.06989 -10.84895 -10.77094 -10.60527 -9.53141 -8.91872 -7.85404 -5.21242 1.46288 1.48882 1.55028 1.61670 2.00069 2.48012 2.80491 3.32232 3.34849 3.42390 3.51569 3.66572 3.78204 3.82991 3.89661 4.03679 4.08265 4.11472 4.21170 4.27320 4.51329 4.55727 4.61507 4.68668 4.71632 4.77001 4.85140 4.89293 4.94041 5.00751 5.02846 5.06796 5.13739 5.22395 5.23318 5.24797 5.39087 5.44042 5.52308 5.64189 6.09102 6.61612 6.78007 7.02015 7.18672 7.70445 8.40700 9.25574 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.004547 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.770775 B = 6156.227667 C = 6840.821671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.180 3.820 3 O -0.571 6.571 4 C -0.153 4.153 5 C 0.523 3.477 6 O -0.585 6.585 7 N -0.608 5.608 8 C 0.090 3.910 9 C 0.133 3.867 10 H 0.136 0.864 11 C -0.128 4.128 12 C 0.100 3.900 13 H 0.112 0.888 14 C 0.188 3.812 15 N -0.617 5.617 16 C -0.231 4.231 17 H 0.096 0.904 18 C -0.071 4.071 19 N -0.959 5.959 20 Si 0.976 3.024 21 H -0.276 1.276 22 H -0.304 1.304 23 H -0.274 1.274 24 C -0.198 4.198 25 C -0.163 4.163 26 C -0.171 4.171 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.382 0.618 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.015 0.985 38 H -0.005 1.005 39 H 0.243 0.757 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 11.019 2.549 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.139 3.861 3 O -0.382 6.382 4 C -0.193 4.193 5 C 0.315 3.685 6 O -0.467 6.467 7 N -0.340 5.340 8 C -0.034 4.034 9 C 0.027 3.973 10 H 0.153 0.847 11 C -0.167 4.167 12 C -0.003 4.003 13 H 0.130 0.870 14 C 0.062 3.938 15 N -0.342 5.342 16 C -0.360 4.360 17 H 0.114 0.886 18 C -0.263 4.263 19 N -0.608 5.608 20 Si 0.805 3.195 21 H -0.201 1.201 22 H -0.231 1.231 23 H -0.199 1.199 24 C -0.217 4.217 25 C -0.200 4.200 26 C -0.208 4.208 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.234 0.766 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.013 0.987 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.141 0.859 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.746 11.249 1.953 17.112 hybrid contribution 1.491 -1.635 -0.631 2.301 sum -11.255 9.614 1.321 14.861 Atomic orbital electron populations 1.21897 0.90328 1.03652 1.03642 1.20401 0.95087 0.81053 0.89592 1.86346 1.28731 1.26260 1.96817 1.22421 0.90109 1.04569 1.02205 1.20832 0.90849 0.77318 0.79537 1.90534 1.71100 1.47973 1.37140 1.49337 1.07538 1.49310 1.27841 1.23233 0.97508 0.94852 0.87799 1.23622 0.91192 0.87182 0.95295 0.84680 1.24095 1.00555 0.99493 0.92546 1.24106 0.81527 0.96264 0.98399 0.86970 1.21400 0.95755 0.87833 0.88828 1.45499 1.68160 1.02047 1.18445 1.19512 1.31520 0.81802 1.03133 0.88622 1.25651 1.01472 1.02405 0.96784 1.70158 1.45535 1.34348 1.10747 0.85178 0.77820 0.79925 0.76578 1.20145 1.23067 1.19938 1.23073 0.99578 1.05459 0.93576 1.22811 1.03489 0.97823 0.95898 1.23226 0.99113 0.95677 1.02776 0.89214 0.90724 0.91184 0.76588 0.85897 0.87547 0.87861 0.92805 0.87812 0.90369 0.96728 0.98706 0.94773 0.90482 0.87771 0.89609 0.85924 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.44 71.98 0.54 -1.98 16 2 C 0.18 4.50 0.92 -10.79 -0.01 4.49 16 3 O -0.57 -16.35 12.87 -131.37 -1.69 -18.04 16 4 C -0.15 -3.81 4.28 29.85 0.13 -3.69 16 5 C 0.52 17.43 7.16 87.66 0.63 18.05 16 6 O -0.58 -22.61 12.46 14.57 0.18 -22.43 16 7 N -0.61 -20.65 2.95 -768.63 -2.27 -22.91 16 8 C 0.09 2.67 6.01 87.16 0.52 3.20 16 9 C 0.13 4.42 5.53 46.93 0.26 4.68 16 10 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 11 C -0.13 -3.88 6.83 33.59 0.23 -3.65 16 12 C 0.10 3.79 5.23 46.87 0.25 4.03 16 13 H 0.11 4.23 8.05 -2.39 -0.02 4.21 16 14 C 0.19 9.28 4.75 86.98 0.41 9.69 16 15 N -0.62 -29.05 3.02 -649.61 -1.96 -31.01 16 16 C -0.23 -12.06 10.37 84.03 0.87 -11.19 16 17 H 0.10 4.58 7.83 -2.91 -0.02 4.56 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 19 N -0.96 -58.27 10.56 21.65 0.23 -58.04 16 20 Si 0.98 44.79 29.55 68.60 2.03 46.81 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C -0.20 -5.64 4.70 -10.77 -0.05 -5.69 16 25 C -0.16 -4.02 9.77 30.59 0.30 -3.72 16 26 C -0.17 -3.92 9.57 30.62 0.29 -3.62 16 27 H 0.09 1.33 7.32 -2.39 -0.02 1.32 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.23 6.71 -2.39 -0.02 1.21 16 30 H 0.38 11.83 6.53 -74.05 -0.48 11.35 16 31 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 32 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.01 0.82 7.46 -2.39 -0.02 0.80 16 38 H -0.01 -0.31 7.68 -2.38 -0.02 -0.33 16 39 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.08 2.84 6.09 -2.38 -0.01 2.83 16 41 H 0.10 2.34 7.58 -2.39 -0.02 2.32 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.12 2.18 5.89 -2.39 -0.01 2.17 16 44 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -69.58 341.64 1.86 -67.72 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.51 Total: 30.77 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 4.83 Total: 7.13 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -4.00 Total: -111.97 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.51 Total: -40.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -69.58 1.86 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032364072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.784 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds