Wall clock time and date at job start Tue Mar 31 2020 07:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46889 * 2 1 4 4 H 1.08994 * 110.43655 * 53.54372 * 3 2 1 5 5 C 1.54812 * 110.48728 * 290.99777 * 3 2 1 6 6 C 1.55351 * 101.93065 * 220.34185 * 5 3 2 7 7 O 1.44382 * 103.50116 * 37.05656 * 6 5 3 8 8 C 1.43749 * 106.97063 * 319.90481 * 7 6 5 9 9 H 1.08997 * 109.87806 * 267.08858 * 8 7 6 10 10 C 1.50706 * 109.87346 * 145.94476 * 8 7 6 11 11 O 1.21281 * 120.00063 * 341.92977 * 10 8 7 12 12 N 1.34777 * 119.99950 * 161.93648 * 10 8 7 13 13 C 1.47873 * 126.94155 * 4.70862 * 12 10 8 14 14 C 1.56020 * 105.10180 * 181.97902 * 13 12 10 15 15 H 1.08992 * 116.25029 * 158.83280 * 14 13 12 16 16 C 1.57092 * 99.60704 * 32.80506 * 14 13 12 17 17 C 1.49284 * 126.94411 * 184.39401 * 12 10 8 18 18 H 1.08997 * 116.15220 * 16.72188 * 17 12 10 19 19 C 1.56024 * 104.09286 * 246.71869 * 17 12 10 20 20 N 1.49253 * 105.36651 * 288.93812 * 19 17 12 21 21 C 1.36933 * 127.75255 * 182.18269 * 20 19 17 22 22 H 1.08001 * 120.00135 * 179.50952 * 21 20 19 23 23 C 1.38816 * 119.99872 * 359.51592 * 21 20 19 24 24 N 1.31623 * 119.99858 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00020 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47233 * 59.99665 * 25 23 21 27 27 H 1.48502 * 109.47293 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47491 * 299.99918 * 25 23 21 29 29 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47388 * 299.99926 * 1 2 3 31 31 H 1.08999 * 109.47572 * 59.99897 * 1 2 3 32 32 H 1.08997 * 109.46703 * 239.99821 * 2 1 3 33 33 H 1.09000 * 109.46717 * 119.99779 * 2 1 3 34 34 H 1.09004 * 110.90399 * 338.50948 * 5 3 2 35 35 H 1.08998 * 110.90686 * 102.11162 * 5 3 2 36 36 H 1.08997 * 110.63647 * 278.53238 * 6 5 3 37 37 H 1.08997 * 110.58145 * 155.54320 * 6 5 3 38 38 H 1.08999 * 110.31708 * 300.88329 * 13 12 10 39 39 H 1.08998 * 110.31598 * 63.06964 * 13 12 10 40 40 H 1.09001 * 112.36606 * 64.27213 * 16 14 13 41 41 H 1.09001 * 112.36462 * 191.71416 * 16 14 13 42 42 H 1.09004 * 110.31281 * 47.67541 * 19 17 12 43 43 H 1.08991 * 110.31968 * 169.75851 * 19 17 12 44 44 H 0.97002 * 119.99690 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5946 2.0036 0.8215 5 6 1.7306 2.1266 -1.3539 6 6 3.0312 2.9371 -1.6088 7 8 4.0722 2.0690 -1.1115 8 6 3.5775 1.4710 0.0984 9 1 3.8829 2.0671 0.9583 10 6 4.1087 0.0668 0.2302 11 8 4.5560 -0.5060 -0.7407 12 7 4.0865 -0.5525 1.4271 13 6 3.4931 -0.0413 2.6814 14 6 3.7986 -1.1353 3.7510 15 1 3.7700 -0.8131 4.7918 16 6 5.1828 -1.6481 3.2136 17 6 4.6503 -1.8958 1.7528 18 1 5.3633 -2.3041 1.0366 19 6 3.3961 -2.7664 2.0746 20 7 2.8916 -2.2636 3.3862 21 6 1.8308 -2.7347 4.1127 22 1 1.5785 -2.2779 5.0583 23 6 1.0796 -3.7993 3.6338 24 7 1.3869 -4.3556 2.4812 25 14 -0.3671 -4.4423 4.6252 26 1 -1.3622 -3.3557 4.8105 27 1 -0.9996 -5.5739 3.9009 28 1 0.1100 -4.9081 5.9521 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5734 1.3852 -2.1373 35 1 0.8685 2.7880 -1.2675 36 1 3.0148 3.8745 -1.0529 37 1 3.1637 3.1238 -2.6744 38 1 3.9584 0.9034 2.9627 39 1 2.4166 0.0856 2.5665 40 1 5.9537 -0.8785 3.2522 41 1 5.5008 -2.5702 3.7001 42 1 2.6353 -2.6327 1.3055 43 1 3.6746 -3.8173 2.1518 44 1 0.8622 -5.0998 2.1468 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032454389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:08 Heat of formation + Delta-G solvation = -39.541229 kcal Electronic energy + Delta-G solvation = -25968.710653 eV Core-core repulsion = 22501.102667 eV Total energy + Delta-G solvation = -3467.607986 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02684 -40.56205 -38.69646 -35.89577 -35.29423 -33.31906 -31.39093 -31.02007 -30.21470 -29.73067 -26.97056 -25.57666 -24.53942 -23.87951 -22.45788 -21.48870 -21.13526 -19.89364 -18.78924 -18.05969 -17.52533 -17.51664 -16.95313 -16.34654 -15.94812 -15.85237 -15.39793 -15.20838 -14.77764 -14.65982 -14.40837 -13.78210 -13.59321 -13.51381 -13.34830 -13.14547 -13.01426 -12.83476 -12.67627 -12.60572 -12.37868 -12.21438 -12.14088 -12.10760 -12.02673 -11.86412 -11.67526 -11.53580 -11.42058 -11.07730 -10.75960 -10.42142 -9.51758 -8.87376 -7.81545 -5.15897 1.48047 1.50150 1.56157 1.57762 1.80627 2.50417 3.01157 3.29242 3.37219 3.40475 3.54455 3.66064 3.78097 3.91627 3.97804 4.04647 4.14389 4.22070 4.27302 4.32585 4.40822 4.46980 4.60250 4.66237 4.70814 4.76779 4.84215 4.85478 4.93223 4.95317 5.03548 5.08090 5.15662 5.16775 5.20907 5.26378 5.37087 5.47096 5.53537 5.67499 5.82605 6.10202 6.65350 7.03127 7.17113 7.73260 8.46174 9.30422 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.005796 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.357278 B = 4830.153371 C = 5668.454603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C -0.100 4.100 4 H 0.121 0.879 5 C -0.143 4.143 6 C 0.041 3.959 7 O -0.385 6.385 8 C 0.072 3.928 9 H 0.117 0.883 10 C 0.528 3.472 11 O -0.589 6.589 12 N -0.605 5.605 13 C 0.085 3.915 14 C 0.135 3.865 15 H 0.136 0.864 16 C -0.130 4.130 17 C 0.098 3.902 18 H 0.107 0.893 19 C 0.189 3.811 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.097 0.903 23 C -0.068 4.068 24 N -0.956 5.956 25 Si 0.972 3.028 26 H -0.276 1.276 27 H -0.306 1.306 28 H -0.275 1.275 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.002 0.998 43 H 0.013 0.987 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 17.360 -0.408 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C -0.119 4.119 4 H 0.139 0.861 5 C -0.180 4.180 6 C -0.034 4.034 7 O -0.303 6.303 8 C 0.011 3.989 9 H 0.135 0.865 10 C 0.317 3.683 11 O -0.470 6.470 12 N -0.339 5.339 13 C -0.039 4.039 14 C 0.029 3.971 15 H 0.153 0.847 16 C -0.169 4.169 17 C -0.005 4.005 18 H 0.125 0.875 19 C 0.063 3.937 20 N -0.337 5.337 21 C -0.352 4.352 22 H 0.114 0.886 23 C -0.261 4.261 24 N -0.605 5.605 25 Si 0.801 3.199 26 H -0.202 1.202 27 H -0.233 1.233 28 H -0.201 1.201 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.020 0.980 43 H 0.031 0.969 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.228 16.911 -1.091 17.092 hybrid contribution -1.061 -1.513 -0.060 1.849 sum 1.167 15.398 -1.151 15.485 Atomic orbital electron populations 1.21609 0.94087 1.00798 1.02721 1.21774 0.97710 0.96007 1.01120 1.22547 0.91578 0.96702 1.01069 0.86075 1.23309 0.99790 0.99607 0.95344 1.23953 0.84895 0.93319 1.01262 1.88933 1.40076 1.61420 1.39918 1.22788 0.95071 0.90377 0.90667 0.86531 1.20606 0.77792 0.88659 0.81210 1.90638 1.49607 1.68406 1.38326 1.49224 1.56479 1.18863 1.09352 1.23387 0.98154 0.98745 0.83602 1.23560 0.88716 0.87249 0.97612 0.84662 1.24135 0.97639 1.02276 0.92836 1.24204 0.95648 0.83585 0.97065 0.87497 1.21697 0.91106 0.93824 0.87078 1.45709 1.31992 1.35849 1.20163 1.19449 1.03340 1.11039 1.01401 0.88559 1.25575 1.02442 0.99755 0.98307 1.70143 1.42415 1.26525 1.21444 0.85246 0.79584 0.77307 0.77768 1.20151 1.23339 1.20138 0.95309 0.91382 0.90899 0.95462 0.91985 0.92057 0.86522 0.88875 0.87749 0.87991 0.91829 0.87853 0.90219 0.97951 0.96854 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.78 71.98 0.70 -3.30 16 2 C -0.13 -4.35 4.12 30.60 0.13 -4.22 16 3 C -0.10 -2.47 3.03 -9.80 -0.03 -2.50 16 4 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 5 C -0.14 -2.86 5.99 32.02 0.19 -2.67 16 6 C 0.04 0.80 7.73 72.79 0.56 1.37 16 7 O -0.38 -11.67 10.80 -130.94 -1.41 -13.09 16 8 C 0.07 2.05 3.25 30.22 0.10 2.14 16 9 H 0.12 2.56 7.70 -2.39 -0.02 2.55 16 10 C 0.53 20.03 5.12 87.66 0.45 20.48 16 11 O -0.59 -28.02 16.94 15.01 0.25 -27.77 16 12 N -0.61 -21.59 2.15 -767.62 -1.65 -23.24 16 13 C 0.08 2.52 5.37 87.16 0.47 2.98 16 14 C 0.14 4.45 5.47 46.93 0.26 4.70 16 15 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 16 C -0.13 -4.00 6.84 33.60 0.23 -3.77 16 17 C 0.10 3.84 5.25 47.06 0.25 4.09 16 18 H 0.11 4.27 8.08 -2.39 -0.02 4.25 16 19 C 0.19 9.31 4.83 86.89 0.42 9.73 16 20 N -0.61 -28.37 3.07 -644.97 -1.98 -30.35 16 21 C -0.22 -11.46 10.38 84.04 0.87 -10.59 16 22 H 0.10 4.53 7.83 -2.91 -0.02 4.50 16 23 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 24 N -0.96 -57.69 10.69 21.65 0.23 -57.46 16 25 Si 0.97 44.54 29.55 68.60 2.03 46.57 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.31 -14.69 7.11 99.48 0.71 -13.99 16 28 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16 32 H 0.03 1.09 7.64 -2.39 -0.02 1.08 16 33 H 0.06 2.50 3.96 -2.39 -0.01 2.49 16 34 H 0.06 1.47 7.79 -2.38 -0.02 1.46 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.12 7.92 -2.39 -0.02 2.10 16 39 H 0.06 2.09 6.67 -2.39 -0.02 2.08 16 40 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.00 0.13 7.27 -2.38 -0.02 0.12 16 43 H 0.01 0.75 7.53 -2.39 -0.02 0.73 16 44 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -75.30 338.72 3.51 -71.79 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.98 Total: 18.36 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 5.06 Total: 15.17 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -3.40 Total: -111.04 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.16 Total: -40.86 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.30 3.51 -71.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032454389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.252 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds