Wall clock time and date at job start Tue Mar 31 2020 07:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46778 * 2 1 4 4 H 1.08997 * 110.67853 * 52.02851 * 3 2 1 5 5 O 1.44478 * 110.65583 * 289.03581 * 3 2 1 6 6 C 1.43746 * 106.98554 * 201.45586 * 5 3 2 7 7 C 1.54100 * 107.29659 * 26.51171 * 6 5 3 8 8 C 1.54817 * 104.18606 * 357.97343 * 7 6 5 9 9 H 1.09002 * 110.90844 * 97.31763 * 8 7 6 10 10 C 1.50702 * 110.90659 * 220.88670 * 8 7 6 11 11 O 1.21273 * 119.99869 * 115.67124 * 10 8 7 12 12 N 1.34779 * 119.99708 * 295.66813 * 10 8 7 13 13 C 1.47862 * 126.94458 * 359.69022 * 12 10 8 14 14 C 1.56003 * 105.11384 * 181.87418 * 13 12 10 15 15 H 1.08996 * 116.16624 * 159.04689 * 14 13 12 16 16 C 1.57081 * 99.47448 * 33.16124 * 14 13 12 17 17 C 1.49289 * 126.94170 * 180.02562 * 12 10 8 18 18 H 1.09002 * 116.15361 * 16.70183 * 17 12 10 19 19 C 1.56018 * 104.09292 * 246.70159 * 17 12 10 20 20 N 1.49066 * 105.20366 * 288.09869 * 19 17 12 21 21 C 1.36943 * 127.53928 * 181.97768 * 20 19 17 22 22 H 1.08000 * 119.99677 * 181.25821 * 21 20 19 23 23 C 1.38810 * 120.00144 * 1.26176 * 21 20 19 24 24 N 1.31622 * 119.99951 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99790 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47341 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47039 * 119.99791 * 25 23 21 28 28 H 1.48498 * 109.46717 * 239.99460 * 25 23 21 29 29 H 1.09005 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47428 * 300.00394 * 1 2 3 31 31 H 1.09000 * 109.47204 * 60.00725 * 1 2 3 32 32 H 1.08995 * 109.47428 * 239.99605 * 2 1 3 33 33 H 1.09002 * 109.46730 * 119.99493 * 2 1 3 34 34 H 1.09002 * 109.87733 * 267.08885 * 6 5 3 35 35 H 1.08998 * 110.00304 * 146.00695 * 6 5 3 36 36 H 1.08991 * 110.48958 * 239.30057 * 7 6 5 37 37 H 1.08998 * 110.49031 * 116.64700 * 7 6 5 38 38 H 1.09002 * 110.31753 * 300.89990 * 13 12 10 39 39 H 1.08997 * 110.31584 * 63.09429 * 13 12 10 40 40 H 1.09004 * 112.37236 * 191.51461 * 16 14 13 41 41 H 1.09000 * 112.37061 * 64.07475 * 16 14 13 42 42 H 1.09003 * 110.31789 * 47.67466 * 19 17 12 43 43 H 1.09001 * 110.31872 * 169.85973 * 19 17 12 44 44 H 0.97000 * 119.99450 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5766 2.0145 0.8039 5 8 1.7940 2.0700 -1.2780 6 6 2.7086 3.1737 -1.3868 7 6 3.9340 2.8410 -0.5137 8 6 3.5844 1.4754 0.1265 9 1 4.0380 0.6566 -0.4320 10 6 4.0065 1.4356 1.5726 11 8 3.1710 1.3315 2.4455 12 7 5.3125 1.5156 1.8958 13 6 6.4530 1.6385 0.9628 14 6 7.7222 1.6409 1.8700 15 1 8.6603 1.3714 1.3848 16 6 7.2245 0.6857 3.0134 17 6 5.9004 1.4910 3.2679 18 1 5.2515 1.1217 4.0621 19 6 6.4967 2.9210 3.4514 20 7 7.6978 2.9598 2.5694 21 6 8.5835 3.9922 2.4108 22 1 9.4067 3.8958 1.7184 23 6 8.4232 5.1624 3.1399 24 7 7.4196 5.2801 3.9833 25 14 9.6309 6.5709 2.9229 26 1 10.6606 6.1904 1.9228 27 1 8.9048 7.7775 2.4518 28 1 10.2877 6.8642 4.2220 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2332 4.0858 -1.0261 35 1 3.0166 3.3017 -2.4245 36 1 4.0707 3.5996 0.2569 37 1 4.8293 2.7556 -1.1294 38 1 6.4759 0.7898 0.2792 39 1 6.3869 2.5729 0.4055 40 1 7.8876 0.6936 3.8785 41 1 7.0323 -0.3255 2.6549 42 1 5.7700 3.6756 3.1502 43 1 6.7967 3.0758 4.4878 44 1 7.3078 6.0977 4.4931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032531990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:08 Heat of formation + Delta-G solvation = -31.010944 kcal Electronic energy + Delta-G solvation = -25208.635166 eV Core-core repulsion = 21741.397081 eV Total energy + Delta-G solvation = -3467.238086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52910 -39.30594 -37.48943 -33.77060 -33.51232 -32.50624 -31.19588 -29.08563 -28.59867 -28.29034 -25.27361 -24.37371 -23.37437 -22.08772 -21.17482 -20.24266 -19.85422 -18.51389 -17.47136 -16.59175 -16.03526 -16.01464 -15.45701 -15.24953 -14.58857 -14.27811 -13.95132 -13.67897 -13.46655 -13.34658 -13.11631 -13.04859 -12.27489 -12.09326 -11.95494 -11.74640 -11.61703 -11.46947 -11.32026 -11.06256 -10.93061 -10.88729 -10.83696 -10.76312 -10.66428 -10.57881 -10.29879 -10.09694 -9.71086 -9.66956 -9.39105 -8.77515 -8.06593 -6.98614 -5.82383 -3.16693 2.93529 3.28466 3.33475 3.38616 3.41787 3.82472 4.36720 4.51387 4.59215 4.75273 4.95333 5.04908 5.13421 5.14460 5.18931 5.22921 5.31853 5.36609 5.47911 5.51834 5.58509 5.70827 5.71438 5.79135 5.81795 5.84884 5.92494 5.97334 6.04651 6.13003 6.15973 6.23413 6.29634 6.36437 6.42804 6.54432 6.63982 6.89399 7.35589 7.40387 7.64896 8.00712 8.04374 8.50683 9.02866 9.65368 10.35096 11.30474 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.004473 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.612151 B = 6257.905801 C = 6826.139698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.098 3.902 4 H 0.084 0.916 5 O -0.375 6.375 6 C 0.050 3.950 7 C -0.144 4.144 8 C -0.135 4.135 9 H 0.105 0.895 10 C 0.538 3.462 11 O -0.552 6.552 12 N -0.603 5.603 13 C 0.081 3.919 14 C 0.140 3.860 15 H 0.105 0.895 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.114 0.886 19 C 0.173 3.827 20 N -0.596 5.596 21 C -0.231 4.231 22 H 0.082 0.918 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 -9.696 -8.890 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.040 3.960 4 H 0.102 0.898 5 O -0.295 6.295 6 C -0.027 4.027 7 C -0.183 4.183 8 C -0.157 4.157 9 H 0.123 0.877 10 C 0.326 3.674 11 O -0.431 6.431 12 N -0.336 5.336 13 C -0.044 4.044 14 C 0.031 3.969 15 H 0.123 0.877 16 C -0.191 4.191 17 C -0.004 4.004 18 H 0.132 0.868 19 C 0.049 3.951 20 N -0.321 5.321 21 C -0.359 4.359 22 H 0.099 0.901 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.114 -9.523 -8.506 14.617 hybrid contribution 0.860 1.054 -0.018 1.361 sum -6.254 -8.469 -8.524 13.546 Atomic orbital electron populations 1.21702 0.95232 1.01368 1.02190 1.21515 0.96778 0.94152 1.02600 1.23024 0.91628 0.95022 0.86327 0.89820 1.88859 1.58584 1.45123 1.36890 1.23110 0.89071 0.90154 1.00343 1.22919 0.99352 0.96063 0.99919 1.22837 0.98273 1.00016 0.94562 0.87698 1.19712 0.81172 0.76501 0.90002 1.90664 1.50403 1.51548 1.50518 1.49207 1.04695 1.70421 1.09312 1.23350 0.87921 1.00220 0.92954 1.23150 0.94325 0.87685 0.91779 0.87695 1.24170 0.97098 0.97131 1.00738 1.24337 0.92470 0.99492 0.84141 0.86846 1.22096 0.87954 0.89472 0.95611 1.45514 1.28251 1.11367 1.46940 1.19083 1.04505 0.91936 1.20333 0.90053 1.24813 0.98375 0.98135 0.98882 1.69917 1.30797 1.26996 1.28823 0.86054 0.80098 0.82262 0.77360 1.20443 1.21779 1.21703 0.92867 0.92619 0.92291 0.91464 0.90274 0.92233 0.89703 0.89790 0.89619 0.92815 0.90935 0.89728 0.91719 0.93641 0.92362 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.86 37.16 0.37 -1.26 16 2 C -0.11 -1.38 5.69 -26.73 -0.15 -1.53 16 3 C 0.10 1.37 2.36 -25.68 -0.06 1.31 16 4 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 5 O -0.38 -5.20 11.09 -35.23 -0.39 -5.59 16 6 C 0.05 0.61 7.70 37.73 0.29 0.90 16 7 C -0.14 -1.93 5.33 -25.20 -0.13 -2.06 16 8 C -0.14 -1.91 2.43 -89.76 -0.22 -2.12 16 9 H 0.10 1.31 8.06 -51.93 -0.42 0.89 16 10 C 0.54 9.44 7.13 -10.98 -0.08 9.37 16 11 O -0.55 -11.26 16.11 5.56 0.09 -11.17 16 12 N -0.60 -10.65 2.95 -156.82 -0.46 -11.11 16 13 C 0.08 1.31 5.62 -1.69 -0.01 1.30 16 14 C 0.14 2.49 5.47 -62.55 -0.34 2.15 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 16 C -0.15 -2.49 6.79 -22.32 -0.15 -2.64 16 17 C 0.10 1.84 5.24 -62.57 -0.33 1.52 16 18 H 0.11 2.09 8.06 -51.93 -0.42 1.67 16 19 C 0.17 4.05 4.82 -1.00 0.00 4.05 16 20 N -0.60 -13.90 3.09 -155.37 -0.48 -14.38 16 21 C -0.23 -5.98 10.38 -15.06 -0.16 -6.13 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 24 N -0.92 -26.31 10.66 55.49 0.59 -25.71 16 25 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.32 7.85 -51.93 -0.41 0.91 16 37 H 0.09 1.02 7.64 -51.93 -0.40 0.62 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.26 6.90 -51.93 -0.36 0.90 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.22 7.77 -51.93 -0.40 0.82 16 43 H 0.06 1.51 7.44 -51.93 -0.39 1.12 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -30.36 345.92 -8.91 -39.27 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.37 Total: 2.61 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.07 Total: 4.59 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.35 Total: -51.21 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.30 Total: -16.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.36 -8.91 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032531990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.262 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds