Wall clock time and date at job start Tue Mar 31 2020 07:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46778 * 2 1 4 4 H 1.08997 * 110.67853 * 52.02851 * 3 2 1 5 5 O 1.44478 * 110.65583 * 289.03581 * 3 2 1 6 6 C 1.43746 * 106.98554 * 201.45586 * 5 3 2 7 7 C 1.54100 * 107.29659 * 26.51171 * 6 5 3 8 8 C 1.54817 * 104.18606 * 357.97343 * 7 6 5 9 9 H 1.09002 * 110.90844 * 97.31763 * 8 7 6 10 10 C 1.50702 * 110.90659 * 220.88670 * 8 7 6 11 11 O 1.21273 * 119.99869 * 115.67124 * 10 8 7 12 12 N 1.34779 * 119.99708 * 295.66813 * 10 8 7 13 13 C 1.47862 * 126.94458 * 359.69022 * 12 10 8 14 14 C 1.56003 * 105.11384 * 181.87418 * 13 12 10 15 15 H 1.08996 * 116.16624 * 159.04689 * 14 13 12 16 16 C 1.57081 * 99.47448 * 33.16124 * 14 13 12 17 17 C 1.49289 * 126.94170 * 180.02562 * 12 10 8 18 18 H 1.09002 * 116.15361 * 16.70183 * 17 12 10 19 19 C 1.56018 * 104.09292 * 246.70159 * 17 12 10 20 20 N 1.49066 * 105.20366 * 288.09869 * 19 17 12 21 21 C 1.36943 * 127.53928 * 181.97768 * 20 19 17 22 22 H 1.08000 * 119.99677 * 181.25821 * 21 20 19 23 23 C 1.38810 * 120.00144 * 1.26176 * 21 20 19 24 24 N 1.31622 * 119.99951 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99790 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47341 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47039 * 119.99791 * 25 23 21 28 28 H 1.48498 * 109.46717 * 239.99460 * 25 23 21 29 29 H 1.09005 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47428 * 300.00394 * 1 2 3 31 31 H 1.09000 * 109.47204 * 60.00725 * 1 2 3 32 32 H 1.08995 * 109.47428 * 239.99605 * 2 1 3 33 33 H 1.09002 * 109.46730 * 119.99493 * 2 1 3 34 34 H 1.09002 * 109.87733 * 267.08885 * 6 5 3 35 35 H 1.08998 * 110.00304 * 146.00695 * 6 5 3 36 36 H 1.08991 * 110.48958 * 239.30057 * 7 6 5 37 37 H 1.08998 * 110.49031 * 116.64700 * 7 6 5 38 38 H 1.09002 * 110.31753 * 300.89990 * 13 12 10 39 39 H 1.08997 * 110.31584 * 63.09429 * 13 12 10 40 40 H 1.09004 * 112.37236 * 191.51461 * 16 14 13 41 41 H 1.09000 * 112.37061 * 64.07475 * 16 14 13 42 42 H 1.09003 * 110.31789 * 47.67466 * 19 17 12 43 43 H 1.09001 * 110.31872 * 169.85973 * 19 17 12 44 44 H 0.97000 * 119.99450 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5766 2.0145 0.8039 5 8 1.7940 2.0700 -1.2780 6 6 2.7086 3.1737 -1.3868 7 6 3.9340 2.8410 -0.5137 8 6 3.5844 1.4754 0.1265 9 1 4.0380 0.6566 -0.4320 10 6 4.0065 1.4356 1.5726 11 8 3.1710 1.3315 2.4455 12 7 5.3125 1.5156 1.8958 13 6 6.4530 1.6385 0.9628 14 6 7.7222 1.6409 1.8700 15 1 8.6603 1.3714 1.3848 16 6 7.2245 0.6857 3.0134 17 6 5.9004 1.4910 3.2679 18 1 5.2515 1.1217 4.0621 19 6 6.4967 2.9210 3.4514 20 7 7.6978 2.9598 2.5694 21 6 8.5835 3.9922 2.4108 22 1 9.4067 3.8958 1.7184 23 6 8.4232 5.1624 3.1399 24 7 7.4196 5.2801 3.9833 25 14 9.6309 6.5709 2.9229 26 1 10.6606 6.1904 1.9228 27 1 8.9048 7.7775 2.4518 28 1 10.2877 6.8642 4.2220 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2332 4.0858 -1.0261 35 1 3.0166 3.3017 -2.4245 36 1 4.0707 3.5996 0.2569 37 1 4.8293 2.7556 -1.1294 38 1 6.4759 0.7898 0.2792 39 1 6.3869 2.5729 0.4055 40 1 7.8876 0.6936 3.8785 41 1 7.0323 -0.3255 2.6549 42 1 5.7700 3.6756 3.1502 43 1 6.7967 3.0758 4.4878 44 1 7.3078 6.0977 4.4931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032531990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:07 Heat of formation + Delta-G solvation = -49.868466 kcal Electronic energy + Delta-G solvation = -25209.452890 eV Core-core repulsion = 21741.397081 eV Total energy + Delta-G solvation = -3468.055809 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87777 -40.60309 -38.90529 -35.47755 -34.52990 -33.90739 -32.72633 -30.66326 -30.21987 -29.36681 -26.97630 -25.75558 -24.70968 -23.34754 -22.25533 -21.61758 -21.39298 -20.03175 -18.96347 -18.14020 -17.51196 -17.17862 -16.91194 -16.39777 -16.10296 -15.82446 -15.51166 -14.90503 -14.68012 -14.56771 -14.47778 -14.05923 -13.79476 -13.53055 -13.38230 -13.27064 -13.06331 -12.82424 -12.75674 -12.64179 -12.47108 -12.28189 -12.14326 -11.99796 -11.89291 -11.86582 -11.77547 -11.63379 -11.51734 -10.98160 -10.75621 -10.62670 -9.55240 -8.91882 -7.85619 -5.20646 1.46845 1.47186 1.55092 1.57434 1.92532 2.47867 2.75384 3.30047 3.35230 3.44987 3.53101 3.58997 3.80538 3.89745 3.96470 4.02246 4.09813 4.14550 4.20718 4.21323 4.39940 4.49411 4.59000 4.67257 4.74849 4.76486 4.81480 4.85091 4.93177 4.97386 4.97936 5.02818 5.08590 5.13916 5.21211 5.25611 5.39087 5.44160 5.50377 5.63491 5.83771 6.07488 6.63821 7.00297 7.10609 7.69585 8.41637 9.26636 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.004473 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.612151 B = 6257.905801 C = 6826.139698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.098 3.902 4 H 0.054 0.946 5 O -0.379 6.379 6 C 0.049 3.951 7 C -0.140 4.140 8 C -0.126 4.126 9 H 0.136 0.864 10 C 0.533 3.467 11 O -0.588 6.588 12 N -0.606 5.606 13 C 0.088 3.912 14 C 0.133 3.867 15 H 0.135 0.865 16 C -0.129 4.129 17 C 0.100 3.900 18 H 0.113 0.887 19 C 0.187 3.813 20 N -0.616 5.616 21 C -0.225 4.225 22 H 0.097 0.903 23 C -0.071 4.071 24 N -0.958 5.958 25 Si 0.974 3.026 26 H -0.257 1.257 27 H -0.301 1.301 28 H -0.298 1.298 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.103 0.897 42 H -0.005 1.005 43 H 0.018 0.982 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -12.080 -11.866 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.040 3.960 4 H 0.072 0.928 5 O -0.298 6.298 6 C -0.028 4.028 7 C -0.178 4.178 8 C -0.148 4.148 9 H 0.153 0.847 10 C 0.323 3.677 11 O -0.469 6.469 12 N -0.338 5.338 13 C -0.036 4.036 14 C 0.027 3.973 15 H 0.152 0.848 16 C -0.169 4.169 17 C -0.003 4.003 18 H 0.131 0.869 19 C 0.061 3.939 20 N -0.341 5.341 21 C -0.354 4.354 22 H 0.115 0.885 23 C -0.263 4.263 24 N -0.608 5.608 25 Si 0.804 3.196 26 H -0.181 1.181 27 H -0.228 1.228 28 H -0.226 1.226 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.013 0.987 43 H 0.036 0.964 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.962 -11.951 -11.536 17.648 hybrid contribution 0.489 1.788 0.907 2.063 sum -5.472 -10.163 -10.630 15.692 Atomic orbital electron populations 1.21688 0.94576 1.02442 1.01596 1.21507 0.97416 0.92763 1.03021 1.22953 0.91539 0.95825 0.85700 0.92837 1.88858 1.59135 1.45487 1.36346 1.23238 0.88227 0.89560 1.01726 1.22886 1.00911 0.94648 0.99375 1.22850 0.98394 1.01351 0.92162 0.84657 1.20354 0.80634 0.75436 0.91303 1.90647 1.51290 1.53021 1.51982 1.49271 1.05361 1.70247 1.08923 1.23300 0.86050 1.01682 0.92595 1.23577 0.96453 0.84927 0.92366 0.84751 1.24067 0.94560 0.98246 0.99979 1.24139 0.94006 0.96831 0.85347 0.86946 1.21690 0.87430 0.91291 0.93482 1.45754 1.27558 1.13132 1.47625 1.19572 1.04543 0.92277 1.18984 0.88487 1.25627 1.00228 1.00947 0.99543 1.70156 1.33090 1.26986 1.30553 0.85054 0.78407 0.79009 0.77153 1.18082 1.22839 1.22588 0.90963 0.93760 0.92347 0.89602 0.91067 0.92695 0.86766 0.93183 0.87405 0.87871 0.92300 0.90281 0.87842 0.98700 0.96352 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.86 71.98 0.71 -2.30 16 2 C -0.11 -2.48 5.69 30.59 0.17 -2.30 16 3 C 0.10 2.64 2.36 31.28 0.07 2.71 16 4 H 0.05 1.76 7.48 -2.39 -0.02 1.75 16 5 O -0.38 -9.78 11.09 -148.98 -1.65 -11.44 16 6 C 0.05 1.11 7.70 72.35 0.56 1.66 16 7 C -0.14 -3.52 5.33 31.59 0.17 -3.35 16 8 C -0.13 -3.31 2.43 -10.24 -0.02 -3.33 16 9 H 0.14 2.76 8.06 -2.39 -0.02 2.74 16 10 C 0.53 18.36 7.13 87.66 0.63 18.99 16 11 O -0.59 -24.45 16.11 -3.01 -0.05 -24.50 16 12 N -0.61 -20.61 2.95 -768.44 -2.26 -22.87 16 13 C 0.09 2.54 5.62 87.16 0.49 3.03 16 14 C 0.13 4.35 5.47 46.92 0.26 4.60 16 15 H 0.13 3.64 8.14 -2.39 -0.02 3.62 16 16 C -0.13 -3.88 6.79 33.45 0.23 -3.65 16 17 C 0.10 3.76 5.24 46.92 0.25 4.00 16 18 H 0.11 4.23 8.06 -2.39 -0.02 4.21 16 19 C 0.19 9.15 4.82 86.93 0.42 9.57 16 20 N -0.62 -28.66 3.09 -645.46 -2.00 -30.66 16 21 C -0.23 -11.61 10.38 84.03 0.87 -10.74 16 22 H 0.10 4.60 7.83 -2.91 -0.02 4.58 16 23 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 24 N -0.96 -57.90 10.66 21.65 0.23 -57.67 16 25 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 29 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.20 8.06 -2.39 -0.02 1.19 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.60 7.85 -2.39 -0.02 1.58 16 37 H 0.11 2.22 7.64 -2.39 -0.02 2.20 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.91 6.90 -2.39 -0.02 1.89 16 40 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H -0.01 -0.30 7.77 -2.39 -0.02 -0.32 16 43 H 0.02 1.02 7.44 -2.39 -0.02 1.00 16 44 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -70.42 345.92 2.53 -67.90 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.97 Total: 17.20 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 5.26 Total: 15.44 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.03 Total: -111.20 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.70 Total: -35.94 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.42 2.53 -67.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032531990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.029 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds