Wall clock time and date at job start Tue Mar 31 2020 07:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00444 * 2 1 4 4 H 1.09002 * 109.48462 * 359.97438 * 3 2 1 5 5 O 1.42890 * 109.48329 * 239.94806 * 3 2 1 6 6 C 1.42911 * 114.10173 * 178.85782 * 5 3 2 7 7 C 1.53089 * 109.41099 * 61.15245 * 6 5 3 8 8 C 1.53190 * 109.21834 * 302.42682 * 7 6 5 9 9 C 1.53090 * 109.47970 * 119.99709 * 3 2 1 10 10 H 1.08996 * 109.52130 * 57.63042 * 9 3 2 11 11 C 1.50698 * 109.52524 * 297.50011 * 9 3 2 12 12 O 1.21284 * 120.00078 * 0.12951 * 11 9 3 13 13 N 1.34781 * 119.99860 * 180.12600 * 11 9 3 14 14 C 1.46503 * 119.99702 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46811 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.73436 * 56.24069 * 15 14 13 17 17 C 1.53500 * 113.51867 * 187.02875 * 15 14 13 18 18 C 1.53242 * 83.42757 * 140.69039 * 17 15 14 19 19 N 1.47062 * 113.47107 * 285.49399 * 15 14 13 20 20 C 1.36943 * 136.05579 * 38.00619 * 19 15 14 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 15 22 22 C 1.38811 * 119.99622 * 180.27778 * 20 19 15 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 H 1.07999 * 119.99962 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99797 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99428 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.48242 * 181.13764 * 6 5 3 32 32 H 1.08996 * 109.47482 * 301.17685 * 6 5 3 33 33 H 1.09002 * 109.52539 * 62.30146 * 7 6 5 34 34 H 1.09002 * 109.52198 * 182.42741 * 7 6 5 35 35 H 1.09001 * 109.49148 * 297.05628 * 8 7 6 36 36 H 1.09002 * 109.59745 * 176.78112 * 8 7 6 37 37 H 0.97000 * 120.00011 * 0.02562 * 13 11 9 38 38 H 1.09003 * 109.47394 * 59.99952 * 14 13 11 39 39 H 1.09000 * 109.46885 * 299.99493 * 14 13 11 40 40 H 1.09000 * 114.20450 * 254.44148 * 17 15 14 41 41 H 1.08998 * 114.20524 * 27.07858 * 17 15 14 42 42 H 1.08994 * 113.38223 * 219.29349 * 18 17 15 43 43 H 1.08998 * 113.46988 * 88.93092 * 18 17 15 44 44 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3556 2.1337 -0.0005 5 8 2.8861 1.3804 -1.1660 6 6 3.6288 2.5962 -1.2787 7 6 4.5719 2.7292 -0.0801 8 6 3.7524 2.6868 1.2135 9 6 2.9438 1.3863 1.2499 10 1 3.6241 0.5349 1.2724 11 6 2.0740 1.3685 2.4804 12 8 0.8684 1.2954 2.3699 13 7 2.6359 1.4337 3.7038 14 6 1.7903 1.4159 4.9001 15 6 2.6710 1.4998 6.1484 16 1 3.3207 2.3751 6.1475 17 6 1.8942 1.3164 7.4596 18 6 3.1336 0.5177 7.8768 19 7 3.3775 0.2463 6.4521 20 6 3.9884 -0.7419 5.7270 21 1 4.0143 -0.6831 4.6489 22 6 4.5688 -1.8221 6.3775 23 7 4.5368 -1.8940 7.6913 24 14 5.3953 -3.1739 5.3880 25 1 6.8288 -2.8389 5.1933 26 1 5.2827 -4.4617 6.1189 27 1 4.7313 -3.2958 4.0653 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 4.2113 2.5823 -2.1998 32 1 2.9412 3.4417 -1.2958 33 1 5.2858 1.9056 -0.0851 34 1 5.1080 3.6763 -0.1419 35 1 3.0736 3.5391 1.2421 36 1 4.4227 2.7236 2.0722 37 1 3.6000 1.4925 3.7922 38 1 1.2140 0.4910 4.9240 39 1 1.1101 2.2674 4.8769 40 1 1.7434 2.2377 8.0223 41 1 0.9886 0.7176 7.3625 42 1 2.8980 -0.3759 8.4547 43 1 3.9078 1.1286 8.3410 44 1 4.9427 -2.6486 8.1457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038259743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:25 Heat of formation + Delta-G solvation = -10.338497 kcal Electronic energy + Delta-G solvation = -24612.978688 eV Core-core repulsion = 21146.637027 eV Total energy + Delta-G solvation = -3466.341661 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37937 -38.73605 -37.90853 -34.47412 -33.79926 -33.60259 -32.23638 -30.39680 -28.08839 -27.56986 -25.13042 -24.27255 -23.50261 -21.98300 -20.93776 -19.93690 -19.85960 -19.19981 -17.45060 -16.61695 -16.42804 -15.90224 -15.43220 -15.33792 -14.83274 -14.59324 -14.33096 -13.97944 -13.89910 -13.61280 -13.45141 -12.87756 -12.78406 -12.53833 -11.94011 -11.81242 -11.60950 -11.54760 -11.21426 -11.13803 -11.03276 -10.99125 -10.78626 -10.60467 -10.47216 -10.00741 -9.86634 -9.75652 -9.63439 -9.28415 -8.98055 -8.83826 -8.53262 -6.93163 -5.80009 -3.12651 2.37115 2.96061 3.35212 3.40822 3.42757 3.46051 3.92485 4.40263 4.55875 4.60994 4.67309 4.81652 5.00438 5.09841 5.16518 5.21258 5.33954 5.37276 5.39404 5.54397 5.55129 5.61727 5.69797 5.72546 5.78327 5.84503 5.89233 6.01221 6.08905 6.10134 6.30409 6.38547 6.57378 6.70418 6.75056 6.88659 6.90181 7.14361 7.19649 7.36695 7.54573 7.90735 7.94282 8.57547 8.99652 9.67130 10.59812 11.37210 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.004678 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.980411 B = 5983.932140 C = 6595.363854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 C 0.146 3.854 4 H 0.067 0.933 5 O -0.375 6.375 6 C 0.059 3.941 7 C -0.155 4.155 8 C -0.113 4.113 9 C -0.138 4.138 10 H 0.106 0.894 11 C 0.518 3.482 12 O -0.543 6.543 13 N -0.712 5.712 14 C 0.123 3.877 15 C 0.127 3.873 16 H 0.047 0.953 17 C -0.161 4.161 18 C 0.152 3.848 19 N -0.601 5.601 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 10.732 -12.926 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C 0.088 3.912 4 H 0.085 0.915 5 O -0.294 6.294 6 C -0.018 4.018 7 C -0.193 4.193 8 C -0.151 4.151 9 C -0.159 4.159 10 H 0.124 0.876 11 C 0.303 3.697 12 O -0.421 6.421 13 N -0.362 5.362 14 C -0.002 4.002 15 C 0.019 3.981 16 H 0.064 0.936 17 C -0.200 4.200 18 C 0.026 3.974 19 N -0.327 5.327 20 C -0.341 4.341 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.382 10.195 -13.167 16.992 hybrid contribution 1.245 -0.560 -0.041 1.366 sum -2.137 9.634 -13.208 16.488 Atomic orbital electron populations 1.23694 0.95540 1.01648 0.97104 1.22374 0.95658 0.96529 1.02382 1.20817 0.90152 0.97008 0.83228 0.91468 1.87985 1.60192 1.38729 1.42502 1.22588 0.93660 0.87248 0.98322 1.22209 0.98907 1.03215 0.94965 1.21591 0.98668 0.96103 0.98742 1.21958 0.98670 1.00940 0.94376 0.87640 1.20192 0.88644 0.76381 0.84452 1.90673 1.14669 1.49915 1.86830 1.45970 1.11054 1.73648 1.05524 1.21778 0.93444 1.01346 0.83609 1.22416 0.92359 0.91253 0.92041 0.93562 1.23611 0.99360 0.99982 0.97048 1.21968 0.90605 0.96606 0.88216 1.45647 1.65689 1.18644 1.02713 1.18834 1.28665 0.97004 0.89633 0.90249 1.24766 1.01252 0.98604 0.95699 1.69821 1.49037 1.31384 1.06234 0.86196 0.79337 0.81715 0.79011 1.21621 1.21580 1.20616 0.88533 0.88397 0.87256 0.88767 0.93234 0.90587 0.90465 0.91295 0.90488 0.76387 0.91176 0.92427 0.92369 0.90250 0.91036 0.95748 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 13.11 29.01 0.38 -1.57 16 2 C -0.15 -2.18 8.04 -36.03 -0.29 -2.47 16 3 C 0.15 1.98 2.17 -27.84 -0.06 1.92 16 4 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 5 O -0.38 -4.87 10.39 -35.23 -0.37 -5.24 16 6 C 0.06 0.56 6.84 37.20 0.25 0.82 16 7 C -0.16 -1.41 6.13 -26.59 -0.16 -1.57 16 8 C -0.11 -1.21 5.19 -26.54 -0.14 -1.35 16 9 C -0.14 -1.85 2.22 -91.63 -0.20 -2.06 16 10 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 11 C 0.52 8.48 6.89 -10.98 -0.08 8.41 16 12 O -0.54 -10.22 14.02 5.55 0.08 -10.15 16 13 N -0.71 -11.82 5.24 -60.29 -0.32 -12.14 16 14 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 15 C 0.13 2.41 4.11 -72.40 -0.30 2.11 16 16 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.16 -2.90 8.02 -26.35 -0.21 -3.11 16 18 C 0.15 3.44 7.38 -8.64 -0.06 3.38 16 19 N -0.60 -14.46 3.66 -177.16 -0.65 -15.11 16 20 C -0.21 -5.68 10.55 -15.06 -0.16 -5.84 16 21 H 0.08 2.02 7.51 -52.49 -0.39 1.63 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -26.81 11.51 55.49 0.64 -26.17 16 24 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 H 0.10 1.29 7.83 -52.49 -0.41 0.88 16 29 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16 37 H 0.40 6.41 7.87 -40.82 -0.32 6.09 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 42 H 0.07 1.82 7.13 -51.93 -0.37 1.45 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -31.28 355.18 -8.78 -40.06 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.35 Total: 5.95 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.14 Total: 0.56 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.32 Total: -53.41 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.29 Total: -15.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.28 -8.78 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038259743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.719 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds