Wall clock time and date at job start Tue Mar 31 2020 07:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00444 * 2 1 4 4 H 1.09002 * 109.48462 * 359.97438 * 3 2 1 5 5 O 1.42890 * 109.48329 * 239.94806 * 3 2 1 6 6 C 1.42911 * 114.10173 * 178.85782 * 5 3 2 7 7 C 1.53089 * 109.41099 * 61.15245 * 6 5 3 8 8 C 1.53190 * 109.21834 * 302.42682 * 7 6 5 9 9 C 1.53090 * 109.47970 * 119.99709 * 3 2 1 10 10 H 1.08996 * 109.52130 * 57.63042 * 9 3 2 11 11 C 1.50698 * 109.52524 * 297.50011 * 9 3 2 12 12 O 1.21284 * 120.00078 * 0.12951 * 11 9 3 13 13 N 1.34781 * 119.99860 * 180.12600 * 11 9 3 14 14 C 1.46503 * 119.99702 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46811 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.73436 * 56.24069 * 15 14 13 17 17 C 1.53500 * 113.51867 * 187.02875 * 15 14 13 18 18 C 1.53242 * 83.42757 * 140.69039 * 17 15 14 19 19 N 1.47062 * 113.47107 * 285.49399 * 15 14 13 20 20 C 1.36943 * 136.05579 * 38.00619 * 19 15 14 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 15 22 22 C 1.38811 * 119.99622 * 180.27778 * 20 19 15 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 H 1.07999 * 119.99962 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99797 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99428 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.48242 * 181.13764 * 6 5 3 32 32 H 1.08996 * 109.47482 * 301.17685 * 6 5 3 33 33 H 1.09002 * 109.52539 * 62.30146 * 7 6 5 34 34 H 1.09002 * 109.52198 * 182.42741 * 7 6 5 35 35 H 1.09001 * 109.49148 * 297.05628 * 8 7 6 36 36 H 1.09002 * 109.59745 * 176.78112 * 8 7 6 37 37 H 0.97000 * 120.00011 * 0.02562 * 13 11 9 38 38 H 1.09003 * 109.47394 * 59.99952 * 14 13 11 39 39 H 1.09000 * 109.46885 * 299.99493 * 14 13 11 40 40 H 1.09000 * 114.20450 * 254.44148 * 17 15 14 41 41 H 1.08998 * 114.20524 * 27.07858 * 17 15 14 42 42 H 1.08994 * 113.38223 * 219.29349 * 18 17 15 43 43 H 1.08998 * 113.46988 * 88.93092 * 18 17 15 44 44 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3556 2.1337 -0.0005 5 8 2.8861 1.3804 -1.1660 6 6 3.6288 2.5962 -1.2787 7 6 4.5719 2.7292 -0.0801 8 6 3.7524 2.6868 1.2135 9 6 2.9438 1.3863 1.2499 10 1 3.6241 0.5349 1.2724 11 6 2.0740 1.3685 2.4804 12 8 0.8684 1.2954 2.3699 13 7 2.6359 1.4337 3.7038 14 6 1.7903 1.4159 4.9001 15 6 2.6710 1.4998 6.1484 16 1 3.3207 2.3751 6.1475 17 6 1.8942 1.3164 7.4596 18 6 3.1336 0.5177 7.8768 19 7 3.3775 0.2463 6.4521 20 6 3.9884 -0.7419 5.7270 21 1 4.0143 -0.6831 4.6489 22 6 4.5688 -1.8221 6.3775 23 7 4.5368 -1.8940 7.6913 24 14 5.3953 -3.1739 5.3880 25 1 6.8288 -2.8389 5.1933 26 1 5.2827 -4.4617 6.1189 27 1 4.7313 -3.2958 4.0653 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 4.2113 2.5823 -2.1998 32 1 2.9412 3.4417 -1.2958 33 1 5.2858 1.9056 -0.0851 34 1 5.1080 3.6763 -0.1419 35 1 3.0736 3.5391 1.2421 36 1 4.4227 2.7236 2.0722 37 1 3.6000 1.4925 3.7922 38 1 1.2140 0.4910 4.9240 39 1 1.1101 2.2674 4.8769 40 1 1.7434 2.2377 8.0223 41 1 0.9886 0.7176 7.3625 42 1 2.8980 -0.3759 8.4547 43 1 3.9078 1.1286 8.3410 44 1 4.9427 -2.6486 8.1457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038259743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:24 Heat of formation + Delta-G solvation = -30.720774 kcal Electronic energy + Delta-G solvation = -24613.862530 eV Core-core repulsion = 21146.637027 eV Total energy + Delta-G solvation = -3467.225503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51628 -40.14573 -39.28109 -35.70898 -34.88600 -34.69513 -34.20143 -31.38538 -29.95980 -29.05351 -26.00653 -25.40787 -25.36729 -23.45433 -22.00033 -21.19823 -20.94334 -20.78413 -18.88750 -18.16070 -17.49729 -17.09798 -17.02967 -16.57371 -16.23158 -15.82054 -15.56883 -15.45513 -15.03044 -14.90112 -14.83853 -14.30080 -13.95178 -13.60634 -13.46780 -13.27328 -12.98178 -12.79185 -12.68039 -12.60176 -12.55275 -12.35287 -12.06689 -11.90494 -11.83955 -11.63209 -11.42249 -11.16602 -10.85873 -10.71713 -10.66894 -10.11653 -9.93160 -8.88917 -7.87739 -5.18986 1.29963 1.42953 1.44522 1.51820 1.68001 2.20484 2.46678 2.96662 3.34916 3.43453 3.58131 3.67835 3.74432 3.93102 4.00163 4.05705 4.11077 4.21434 4.25883 4.35458 4.37259 4.55074 4.65178 4.66659 4.70870 4.78972 4.85917 4.89344 4.94122 5.00863 5.05554 5.08024 5.12293 5.27942 5.33265 5.49572 5.59586 5.66961 5.75120 5.82875 5.97203 6.23514 6.59341 6.93855 7.27257 7.64418 8.64202 9.30027 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.004678 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.980411 B = 5983.932140 C = 6595.363854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.171 4.171 3 C 0.151 3.849 4 H 0.063 0.937 5 O -0.391 6.391 6 C 0.049 3.951 7 C -0.149 4.149 8 C -0.111 4.111 9 C -0.132 4.132 10 H 0.100 0.900 11 C 0.516 3.484 12 O -0.569 6.569 13 N -0.711 5.711 14 C 0.133 3.867 15 C 0.134 3.866 16 H 0.070 0.930 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.629 5.629 20 C -0.205 4.205 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.965 3.035 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.273 1.273 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.406 0.594 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 12.686 -14.370 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.093 3.907 4 H 0.081 0.919 5 O -0.310 6.310 6 C -0.027 4.027 7 C -0.187 4.187 8 C -0.148 4.148 9 C -0.153 4.153 10 H 0.118 0.882 11 C 0.303 3.697 12 O -0.449 6.449 13 N -0.362 5.362 14 C 0.008 3.992 15 C 0.027 3.973 16 H 0.087 0.913 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.355 5.355 20 C -0.333 4.333 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.226 1.226 27 H -0.198 1.198 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.241 0.759 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.117 12.189 -14.641 19.304 hybrid contribution 1.111 -1.093 0.380 1.604 sum -2.006 11.096 -14.261 18.181 Atomic orbital electron populations 1.23836 0.95504 1.02244 0.96435 1.22560 0.96167 0.97035 1.03110 1.20678 0.90153 0.96251 0.83612 0.91937 1.87969 1.60465 1.40572 1.42013 1.22878 0.93906 0.86315 0.99554 1.22196 0.98473 1.04463 0.93570 1.21625 0.98660 0.94459 1.00092 1.21932 0.98267 1.02399 0.92746 0.88171 1.20685 0.88623 0.75361 0.85006 1.90658 1.15982 1.50999 1.87211 1.45956 1.11134 1.73683 1.05382 1.21550 0.93291 1.00621 0.83744 1.22563 0.92082 0.89630 0.92980 0.91290 1.23429 0.97038 1.00676 0.96218 1.21986 0.92968 0.95907 0.87433 1.45965 1.65723 1.20182 1.03611 1.19185 1.26654 0.97249 0.90237 0.89585 1.25497 1.03151 1.01060 0.96562 1.70001 1.50909 1.31831 1.07601 0.85267 0.78582 0.78870 0.77830 1.21151 1.22641 1.19806 0.88461 0.87334 0.87664 0.86770 0.92272 0.90982 0.87883 0.90830 0.89848 0.75917 0.94308 0.90326 0.88206 0.90424 0.94750 0.95934 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 13.11 67.78 0.89 -2.96 16 2 C -0.17 -4.86 8.04 25.64 0.21 -4.65 16 3 C 0.15 3.96 2.17 29.88 0.06 4.02 16 4 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 5 O -0.39 -9.54 10.39 -148.98 -1.55 -11.09 16 6 C 0.05 0.82 6.84 72.01 0.49 1.31 16 7 C -0.15 -2.26 6.13 30.69 0.19 -2.07 16 8 C -0.11 -2.09 5.19 30.72 0.16 -1.93 16 9 C -0.13 -3.36 2.22 -11.45 -0.03 -3.39 16 10 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 11 C 0.52 16.28 6.89 87.66 0.60 16.89 16 12 O -0.57 -20.96 14.02 -3.04 -0.04 -21.00 16 13 N -0.71 -22.45 5.24 -463.04 -2.43 -24.88 16 14 C 0.13 4.51 5.52 86.38 0.48 4.98 16 15 C 0.13 4.77 4.11 41.79 0.17 4.94 16 16 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 17 C -0.13 -4.56 8.02 30.84 0.25 -4.31 16 18 C 0.14 6.46 7.38 83.09 0.61 7.07 16 19 N -0.63 -29.92 3.66 -714.40 -2.61 -32.54 16 20 C -0.20 -10.84 10.55 84.03 0.89 -9.96 16 21 H 0.09 4.32 7.51 -2.91 -0.02 4.30 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 23 N -0.95 -57.18 11.51 21.65 0.25 -56.93 16 24 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 28 H 0.10 2.56 7.83 -2.91 -0.02 2.54 16 29 H 0.11 2.59 8.06 -2.91 -0.02 2.56 16 30 H 0.11 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.47 7.68 -2.39 -0.02 1.46 16 37 H 0.41 12.17 7.87 -92.71 -0.73 11.44 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 42 H 0.03 1.79 7.13 -2.39 -0.02 1.78 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -68.30 355.18 1.33 -66.96 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.24 Total: 25.37 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.44 Total: 6.49 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -4.79 Total: -114.35 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.59 Total: -32.09 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -68.30 1.33 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038259743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.242 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds